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#BioSD Converter to RDF

It exports the EBI Biosamples Database into RDF files, to produce our Linked Data end point about BioSD.

The code is mainly based on three components:

  • our java2RDF library (in addition to ZOOMA and bioportal_client). Read more here.

  • the BioSD Feature Annotator (BioSDFA), which extracts ontology and numerical information from textual values in the BioSD submitted data

  • BioSDFA, in turn, is based on Bioportal and ZOOMA, two services for ontology look-up and text/ontology mapping.