• R 3 Updated Dec 20, 2017
  • R 6 Updated Jun 6, 2017
  • HTML 4 Updated Mar 2, 2017
  • Course materials for a bioinformatics course.

    Jupyter Notebook 3 GPL-3.0 Updated Jan 18, 2017
  • Feature selection for biological data formats (Fizzy)

    Python 3 4 GPL-3.0 Updated Aug 17, 2016
  • codes and test dataset for age paper on Microbiome 2013

    Matlab 1 Updated Jul 26, 2016
  • mothur

    Forked from mothur/mothur

    Welcome to the mothur project, initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology & Immunology at The University of Michigan. This project seeks to develop a single piece of open-source, expandable software to fill the bioinformatics needs of the microbial ecology community.

    C++ 68 GPL-3.0 Updated Oct 12, 2015
  • A Bioinformatics Lab to compare a basic ORF predictor to Glimmer's Interpolated Markov Model performance

    Python Updated Nov 18, 2014
  • A Python interface to the Feature Selection Toolkit, contains JMI, BetaGamma, CMIM, CondMI, DISR, ICAP, and mRMR

    Python 8 3 Updated Oct 28, 2014
  • Python implementation of NPFS

    Python 1 3 GPL-3.0 Updated Oct 16, 2014
  • 2014 nbc database update

    Shell Updated Aug 21, 2014
  • Quikr is a QUadratic, Iterative, K-mer based Reconstruction Method

    C 3 1 Updated Jun 19, 2014
  • EESI tools for galaxy

    Updated Jun 18, 2014
  • An implementation of a post-hoc test for subset selection that uses a Neyman-Pearson hypothesis test to identify important variables.

    Matlab 1 2 GPL-3.0 Updated May 27, 2014
  • qiime

    Forked from gditzler/qiime

    Quantitative Insights Into Microbial Ecology (QIIME): Official repository for software and unit tests

    Python 233 Updated May 12, 2014
  • QIIME build with information theoretic feature selection functionality. Note this project include the official build of QIIME (www.qiime.org) with the Fizzy feature selection module for metagenomic feature selection.

    Python 2 1 Updated May 12, 2014
  • R 1 1 Updated May 6, 2014
  • A Toolkit for ARB to Integrate Custom Databases and Externally built Phylogenies

    Python 1 1 Updated Apr 4, 2014
  • general utilities for manipulating sequences and fasta files - high performance kmer counting

    C 5 GPL-3.0 Updated Mar 19, 2014
  • Missing Data Prediction with Python

    Python 2 Updated Dec 2, 2013
  • Naive Bayes Classification Tool

    Standard ML 1 1 Updated Jun 3, 2013