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Course materials for a bioinformatics course.
Feature selection for biological data formats (Fizzy)
codes and test dataset for age paper on Microbiome 2013
Welcome to the mothur project, initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology & Immunology at The University of Michigan. This project seeks to develop a single piece of open-source, expandable software to fill the bioinformatics needs of the microbial ecology community.
A Bioinformatics Lab to compare a basic ORF predictor to Glimmer's Interpolated Markov Model performance
A Python interface to the Feature Selection Toolkit, contains JMI, BetaGamma, CMIM, CondMI, DISR, ICAP, and mRMR
Python implementation of NPFS
2014 nbc database update
Quikr is a QUadratic, Iterative, K-mer based Reconstruction Method
EESI tools for galaxy
An implementation of a post-hoc test for subset selection that uses a Neyman-Pearson hypothesis test to identify important variables.
Quantitative Insights Into Microbial Ecology (QIIME): Official repository for software and unit tests
QIIME build with information theoretic feature selection functionality. Note this project include the official build of QIIME (www.qiime.org) with the Fizzy feature selection module for metagenomic feature selection.
A Toolkit for ARB to Integrate Custom Databases and Externally built Phylogenies
general utilities for manipulating sequences and fasta files - high performance kmer counting
Missing Data Prediction with Python
Naive Bayes Classification Tool