Cancer Structural Biology, Danish Cancer Society Research Center, 2100, Copenhagen, Denmark
Cancer Systems Biology, Health and Technology Department, Section for Bioinformatics, 2800, Lyngby, Denmark
psntools is a Python package to perform Protein Structure Network (PSN) analysis on any protein system, provided a PDB file describing the topology of the protein system and a matrix representing the Protein Structure Network in form of adjacency matrix.
This package requires python 3.7 or higher to be installed.
This package can be installed by downaloading the package, unzipping it, going into the package directory and running python setup.py install.
All required Python dependencies will be automatically installed if not already present.
The package contains several modules to perform various tasks related to PSN analysis and subsequent data processing and visualization. Please refer to the user guide for a detailed description of the modules and their functions.
The unit tests for psntools are currently being written.
early version of the tool: Bcl-xL dynamics under the lens of protein structure networks. Valentina Sora, Dionisio Sanchez, Elena Papaleo*,J Phys Chem B, 2021, 125, 17, 4308–4320 Publication Date:April 13, 2021 https://doi.org/10.1021/acs.jpcb.0c11562
current full version: psntools - a Python package for protein structure network analysis Valentina Sora, Matteo Tiberti, Elena Papaleo biorxiv, doi: https://doi.org/10.1101/2022.02.07.479254