• Metadata database for ENCODE project

    Python 57 32 MIT Updated Aug 18, 2018
  • The SnoVault general purpose hybrid object-relational database

    Python 8 8 MIT Updated Aug 18, 2018
  • ENCODE ATAC-seq pipeline

    Python 27 13 MIT Updated Aug 16, 2018
  • Python 4 3 MIT Updated Aug 15, 2018
  • HiC uniform processing pipeline

    1 MIT Updated Aug 9, 2018
  • Jupyter Notebook 4 9 MIT Updated Aug 7, 2018
  • An infrastructure to run gemBS pipeline https://github.com/heathsc/gemBS

    wdl 2 MIT Updated Aug 7, 2018
  • ENCODE Uniform processing pipeline for ChIP-seq

    Python 61 41 MIT Updated Aug 7, 2018
  • Python MIT Updated Jul 23, 2018
  • Documentation for WDL pipelines at ENCODE-DCC

    1 MIT Updated Jul 23, 2018
  • 1 Updated Jul 23, 2018
  • Python 8 5 MIT Updated Jul 12, 2018
  • Files are checked to see if the MD5 sum (both for gzipped and ungzipped) is identical to the submitted metadata, as well as run through the validateFiles program from jksrc.

    Python MIT Updated Jun 20, 2018
  • Test data for ENCODE chip-seq-pipeline

    Shell MIT Updated Jun 4, 2018
  • Test data for ENCODE atac-seq-pipeline

    HTML MIT Updated May 25, 2018
  • Utility module to interface encoded metadatabase, AWS, and DNANexus api for Universal Pipelines

    Python 2 MIT Updated May 23, 2018
  • Collection of scripts used by the wranglers to interact with the servers

    Python 3 2 MIT Updated May 18, 2018
  • Interactive web-based genome browser.

    JavaScript 1 65 BSD-2-Clause Updated May 2, 2018
  • ENCODE DNase-seq pipeline essentials for running on dnanexus.

    Shell 8 4 MIT Updated May 1, 2018
  • ENCODE / DNA nexus pipeline for file validation

    HTML 2 MIT Updated Apr 23, 2018
  • UCSC command line bioinformatic utilities

    C 76 56 Updated Mar 14, 2018
  • Updated Feb 22, 2018
  • Containerization infrastructure for ENCODE analysis pipelines

    Python 1 1 MIT Updated Jan 24, 2018
  • STAR based ENCODE Long RNA-Seq processing pipeline

    Python 45 30 MIT Updated Jan 19, 2018
  • Fork of weighted tree from vizuly

    JavaScript Updated Dec 7, 2017
  • DCC/DAC methylation pipeline source

    Perl 11 13 MIT Updated Dec 1, 2017
  • Support files for GA4GH/DREAM workflow challenge

    MIT Updated Jul 20, 2017
  • ENCODE analysis pipelines Docker images

    Python MIT Updated Jun 26, 2017
  • ENCODE analysis pipelines cwl scripts

    Shell MIT Updated Jun 26, 2017
  • temporary test-github-integration-repo

    Updated Jun 13, 2017