[jtobias@node107 atac-seq-pipeline]$ source activate encode-atac-seq-pipeline (encode-atac-seq-pipeline) [jtobias@node107 atac-seq-pipeline]$ INPUT=examples/local/ENCSR356KRQ_subsampled.json (encode-atac-seq-pipeline) [jtobias@node107 atac-seq-pipeline]$ java -jar -Dconfig.file=backends/backend.conf cromwell-34.jar run atac.wdl -i ${INPUT} [2018-11-03 21:33:43,66] [info] Running with database db.url = jdbc:hsqldb:mem:b377e2f6-9ce1-42a3-845f-56943b546cac;shutdown=false;hsqldb.tx=mvcc [2018-11-03 21:33:54,86] [info] Running migration RenameWorkflowOptionsInMetadata with a read batch size of 100000 and a write batch size of 100000 [2018-11-03 21:33:54,88] [info] [RenameWorkflowOptionsInMetadata] 100% [2018-11-03 21:33:55,00] [info] Running with database db.url = jdbc:hsqldb:mem:e5b57380-5bd3-4cf4-a71e-25d95eb8ab72;shutdown=false;hsqldb.tx=mvcc [2018-11-03 21:33:55,34] [warn] This actor factory is deprecated. Please use cromwell.backend.google.pipelines.v1alpha2.PipelinesApiLifecycleActorFactory for PAPI v1 or cromwell.backend.google.pipelines.v2alpha1.PipelinesApiLifecycleActorFactory for PAPI v2 [2018-11-03 21:33:55,34] [warn] Couldn't find a suitable DSN, defaulting to a Noop one. [2018-11-03 21:33:55,35] [info] Using noop to send events. [2018-11-03 21:33:55,61] [info] Slf4jLogger started [2018-11-03 21:33:55,80] [info] Workflow heartbeat configuration: { "cromwellId" : "cromid-6e339b7", "heartbeatInterval" : "2 minutes", "ttl" : "10 minutes", "writeBatchSize" : 10000, "writeThreshold" : 10000 } [2018-11-03 21:33:55,84] [info] Metadata summary refreshing every 2 seconds. [2018-11-03 21:33:55,89] [info] WriteMetadataActor configured to flush with batch size 200 and process rate 5 seconds. [2018-11-03 21:33:55,89] [info] KvWriteActor configured to flush with batch size 200 and process rate 5 seconds. [2018-11-03 21:33:55,93] [info] CallCacheWriteActor configured to flush with batch size 100 and process rate 3 seconds. [2018-11-03 21:33:56,57] [info] JobExecutionTokenDispenser - Distribution rate: 50 per 1 seconds. [2018-11-03 21:33:56,58] [info] JES batch polling interval is 33333 milliseconds [2018-11-03 21:33:56,59] [info] JES batch polling interval is 33333 milliseconds [2018-11-03 21:33:56,59] [info] JES batch polling interval is 33333 milliseconds [2018-11-03 21:33:56,59] [info] PAPIQueryManager Running with 3 workers [2018-11-03 21:33:56,59] [info] SingleWorkflowRunnerActor: Version 34 [2018-11-03 21:33:56,59] [info] SingleWorkflowRunnerActor: Submitting workflow [2018-11-03 21:33:56,64] [info] Unspecified type (Unspecified version) workflow 012966a2-46c5-45b8-9c9f-c9da472a75d2 submitted [2018-11-03 21:33:56,69] [info] SingleWorkflowRunnerActor: Workflow submitted 012966a2-46c5-45b8-9c9f-c9da472a75d2 [2018-11-03 21:33:56,69] [info] 1 new workflows fetched [2018-11-03 21:33:56,69] [info] WorkflowManagerActor Starting workflow 012966a2-46c5-45b8-9c9f-c9da472a75d2 [2018-11-03 21:33:56,70] [warn] SingleWorkflowRunnerActor: received unexpected message: Done in state RunningSwraData [2018-11-03 21:33:56,70] [info] WorkflowManagerActor Successfully started WorkflowActor-012966a2-46c5-45b8-9c9f-c9da472a75d2 [2018-11-03 21:33:56,70] [info] Retrieved 1 workflows from the WorkflowStoreActor [2018-11-03 21:33:56,71] [info] WorkflowStoreHeartbeatWriteActor configured to flush with batch size 10000 and process rate 2 minutes. [2018-11-03 21:33:56,76] [info] MaterializeWorkflowDescriptorActor [012966a2]: Parsing workflow as WDL draft-2 [2018-11-03 21:34:08,16] [info] MaterializeWorkflowDescriptorActor [012966a2]: Call-to-Backend assignments: atac.read_genome_tsv -> Local, atac.overlap -> Local, atac.pool_ta_pr2 -> Local, atac.xcor -> Local, atac.macs2_ppr2 -> Local, atac.overlap_pr -> Local, atac.reproducibility_overlap -> Local, atac.filter -> Local, atac.trim_adapter -> Local, atac.idr -> Local, atac.overlap_ppr -> Local, atac.bowtie2 -> Local, atac.reproducibility_idr -> Local, atac.qc_report -> Local, atac.bam2ta -> Local, atac.pool_ta -> Local, atac.idr_ppr -> Local, atac.macs2_pr2 -> Local, atac.macs2_pooled -> Local, atac.macs2_pr1 -> Local, atac.idr_pr -> Local, atac.ataqc -> Local, atac.macs2 -> Local, atac.pool_ta_pr1 -> Local, atac.spr -> Local, atac.macs2_ppr1 -> Local [2018-11-03 21:34:08,25] [warn] Local [012966a2]: Key/s [cpu, memory, time, disks] is/are not supported by backend. Unsupported attributes will not be part of job executions. [2018-11-03 21:34:08,25] [warn] Local [012966a2]: Key/s [cpu, memory, time, disks] is/are not supported by backend. Unsupported attributes will not be part of job executions. [2018-11-03 21:34:08,26] [warn] Local [012966a2]: Key/s [cpu, memory, time, disks] is/are not supported by backend. Unsupported attributes will not be part of job executions. [2018-11-03 21:34:08,26] [warn] Local [012966a2]: Key/s [cpu, memory, time, disks] is/are not supported by backend. Unsupported attributes will not be part of job executions. [2018-11-03 21:34:08,26] [warn] Local [012966a2]: Key/s [cpu, memory, time, disks] is/are not supported by backend. Unsupported attributes will not be part of job executions. [2018-11-03 21:34:08,26] [warn] Local [012966a2]: Key/s [cpu, memory, time, disks] is/are not supported by backend. Unsupported attributes will not be part of job executions. [2018-11-03 21:34:08,26] [warn] Local [012966a2]: Key/s [cpu, memory, time, disks] is/are not supported by backend. Unsupported attributes will not be part of job executions. [2018-11-03 21:34:08,26] [warn] Local [012966a2]: Key/s [cpu, memory, time, disks] is/are not supported by backend. Unsupported attributes will not be part of job executions. [2018-11-03 21:34:08,26] [warn] Local [012966a2]: Key/s [cpu, memory, time, disks] is/are not supported by backend. Unsupported attributes will not be part of job executions. [2018-11-03 21:34:08,26] [warn] Local [012966a2]: Key/s [cpu, memory, time, disks] is/are not supported by backend. Unsupported attributes will not be part of job executions. [2018-11-03 21:34:08,26] [warn] Local [012966a2]: Key/s [cpu, memory, time, disks] is/are not supported by backend. Unsupported attributes will not be part of job executions. [2018-11-03 21:34:08,26] [warn] Local [012966a2]: Key/s [preemptible, disks, cpu, time, memory] is/are not supported by backend. Unsupported attributes will not be part of job executions. [2018-11-03 21:34:08,26] [warn] Local [012966a2]: Key/s [cpu, memory, time, disks] is/are not supported by backend. Unsupported attributes will not be part of job executions. [2018-11-03 21:34:08,26] [warn] Local [012966a2]: Key/s [cpu, memory, time, disks] is/are not supported by backend. Unsupported attributes will not be part of job executions. [2018-11-03 21:34:08,27] [warn] Local [012966a2]: Key/s [cpu, memory, time, disks] is/are not supported by backend. Unsupported attributes will not be part of job executions. [2018-11-03 21:34:08,27] [warn] Local [012966a2]: Key/s [cpu, memory, time, disks] is/are not supported by backend. Unsupported attributes will not be part of job executions. [2018-11-03 21:34:08,27] [warn] Local [012966a2]: Key/s [cpu, memory, time, disks] is/are not supported by backend. Unsupported attributes will not be part of job executions. [2018-11-03 21:34:08,27] [warn] Local [012966a2]: Key/s [cpu, memory, time, disks] is/are not supported by backend. Unsupported attributes will not be part of job executions. [2018-11-03 21:34:08,27] [warn] Local [012966a2]: Key/s [cpu, memory, time, disks] is/are not supported by backend. Unsupported attributes will not be part of job executions. [2018-11-03 21:34:08,27] [warn] Local [012966a2]: Key/s [cpu, memory, time, disks] is/are not supported by backend. Unsupported attributes will not be part of job executions. [2018-11-03 21:34:08,27] [warn] Local [012966a2]: Key/s [cpu, memory, time, disks] is/are not supported by backend. Unsupported attributes will not be part of job executions. [2018-11-03 21:34:08,27] [warn] Local [012966a2]: Key/s [cpu, memory, time, disks] is/are not supported by backend. Unsupported attributes will not be part of job executions. [2018-11-03 21:34:08,27] [warn] Local [012966a2]: Key/s [cpu, memory, time, disks] is/are not supported by backend. Unsupported attributes will not be part of job executions. [2018-11-03 21:34:08,27] [warn] Local [012966a2]: Key/s [cpu, memory, time, disks] is/are not supported by backend. Unsupported attributes will not be part of job executions. [2018-11-03 21:34:08,27] [warn] Local [012966a2]: Key/s [cpu, memory, time, disks] is/are not supported by backend. Unsupported attributes will not be part of job executions. [2018-11-03 21:34:08,27] [warn] Local [012966a2]: Key/s [cpu, memory, time, disks] is/are not supported by backend. Unsupported attributes will not be part of job executions. [2018-11-03 21:34:10,52] [info] WorkflowExecutionActor-012966a2-46c5-45b8-9c9f-c9da472a75d2 [012966a2]: Starting atac.read_genome_tsv [2018-11-03 21:34:10,52] [info] WorkflowExecutionActor-012966a2-46c5-45b8-9c9f-c9da472a75d2 [012966a2]: Condition met: '!true_rep_only'. Running conditional section [2018-11-03 21:34:10,52] [info] WorkflowExecutionActor-012966a2-46c5-45b8-9c9f-c9da472a75d2 [012966a2]: Condition met: '!align_only && !true_rep_only && enable_idr'. Running conditional section [2018-11-03 21:34:10,52] [info] WorkflowExecutionActor-012966a2-46c5-45b8-9c9f-c9da472a75d2 [012966a2]: Condition met: '!align_only && !true_rep_only'. Running conditional section [2018-11-03 21:34:10,53] [info] WorkflowExecutionActor-012966a2-46c5-45b8-9c9f-c9da472a75d2 [012966a2]: Condition met: 'enable_idr'. Running conditional section [2018-11-03 21:34:10,53] [info] WorkflowExecutionActor-012966a2-46c5-45b8-9c9f-c9da472a75d2 [012966a2]: Condition met: '!disable_xcor'. Running conditional section [2018-11-03 21:34:10,53] [info] WorkflowExecutionActor-012966a2-46c5-45b8-9c9f-c9da472a75d2 [012966a2]: Condition met: 'enable_idr'. Running conditional section [2018-11-03 21:34:10,70] [warn] BackgroundConfigAsyncJobExecutionActor [012966a2atac.read_genome_tsv:NA:1]: Unrecognized runtime attribute keys: disks, cpu, time, memory [2018-11-03 21:34:11,11] [info] BackgroundConfigAsyncJobExecutionActor [012966a2atac.read_genome_tsv:NA:1]: cat /home/jtobias/atac-seq-pipeline/cromwell-executions/atac/012966a2-46c5-45b8-9c9f-c9da472a75d2/call-read_genome_tsv/inputs/1158585199/hg38_local.tsv [2018-11-03 21:34:11,16] [info] BackgroundConfigAsyncJobExecutionActor [012966a2atac.read_genome_tsv:NA:1]: executing: /bin/bash /home/jtobias/atac-seq-pipeline/cromwell-executions/atac/012966a2-46c5-45b8-9c9f-c9da472a75d2/call-read_genome_tsv/execution/script [2018-11-03 21:34:14,64] [info] WorkflowExecutionActor-012966a2-46c5-45b8-9c9f-c9da472a75d2 [012966a2]: Starting atac.trim_adapter (2 shards) [2018-11-03 21:34:15,60] [warn] BackgroundConfigAsyncJobExecutionActor [012966a2atac.trim_adapter:0:1]: Unrecognized runtime attribute keys: disks, cpu, time, memory [2018-11-03 21:34:15,60] [warn] BackgroundConfigAsyncJobExecutionActor [012966a2atac.trim_adapter:1:1]: Unrecognized runtime attribute keys: disks, cpu, time, memory [2018-11-03 21:34:15,64] [info] BackgroundConfigAsyncJobExecutionActor [012966a2atac.trim_adapter:1:1]: python $(which encode_trim_adapter.py) \ /home/jtobias/atac-seq-pipeline/cromwell-executions/atac/012966a2-46c5-45b8-9c9f-c9da472a75d2/call-trim_adapter/shard-1/execution/write_tsv_221bdab50b17f21ecd5d80e6a4f64d6d.tmp \ --adapters /home/jtobias/atac-seq-pipeline/cromwell-executions/atac/012966a2-46c5-45b8-9c9f-c9da472a75d2/call-trim_adapter/shard-1/execution/write_tsv_d41d8cd98f00b204e9800998ecf8427e.tmp \ --paired-end \ --auto-detect-adapter \ --min-trim-len 5 \ --err-rate 0.1 \ --nth 1 [2018-11-03 21:34:15,64] [info] BackgroundConfigAsyncJobExecutionActor [012966a2atac.trim_adapter:0:1]: python $(which encode_trim_adapter.py) \ /home/jtobias/atac-seq-pipeline/cromwell-executions/atac/012966a2-46c5-45b8-9c9f-c9da472a75d2/call-trim_adapter/shard-0/execution/write_tsv_c46719ffa42c10540b99b2cf37ab71cf.tmp \ --adapters /home/jtobias/atac-seq-pipeline/cromwell-executions/atac/012966a2-46c5-45b8-9c9f-c9da472a75d2/call-trim_adapter/shard-0/execution/write_tsv_d41d8cd98f00b204e9800998ecf8427e.tmp \ --paired-end \ --auto-detect-adapter \ --min-trim-len 5 \ --err-rate 0.1 \ --nth 1 [2018-11-03 21:34:15,64] [info] BackgroundConfigAsyncJobExecutionActor [012966a2atac.trim_adapter:1:1]: executing: /bin/bash /home/jtobias/atac-seq-pipeline/cromwell-executions/atac/012966a2-46c5-45b8-9c9f-c9da472a75d2/call-trim_adapter/shard-1/execution/script [2018-11-03 21:34:15,64] [info] BackgroundConfigAsyncJobExecutionActor [012966a2atac.trim_adapter:0:1]: executing: /bin/bash /home/jtobias/atac-seq-pipeline/cromwell-executions/atac/012966a2-46c5-45b8-9c9f-c9da472a75d2/call-trim_adapter/shard-0/execution/script [2018-11-03 21:34:15,92] [info] BackgroundConfigAsyncJobExecutionActor [012966a2atac.read_genome_tsv:NA:1]: job id: 25399 [2018-11-03 21:34:15,92] [info] BackgroundConfigAsyncJobExecutionActor [012966a2atac.trim_adapter:1:1]: job id: 25473 [2018-11-03 21:34:15,92] [info] BackgroundConfigAsyncJobExecutionActor [012966a2atac.trim_adapter:0:1]: job id: 25474 [2018-11-03 21:34:15,92] [info] BackgroundConfigAsyncJobExecutionActor [012966a2atac.trim_adapter:1:1]: Status change from - to WaitingForReturnCodeFile [2018-11-03 21:34:15,92] [info] BackgroundConfigAsyncJobExecutionActor [012966a2atac.trim_adapter:0:1]: Status change from - to WaitingForReturnCodeFile [2018-11-03 21:34:15,92] [info] BackgroundConfigAsyncJobExecutionActor [012966a2atac.read_genome_tsv:NA:1]: Status change from - to Done [2018-11-03 21:34:22,82] [info] BackgroundConfigAsyncJobExecutionActor [012966a2atac.trim_adapter:0:1]: Status change from WaitingForReturnCodeFile to Done [2018-11-03 21:34:22,86] [info] BackgroundConfigAsyncJobExecutionActor [012966a2atac.trim_adapter:1:1]: Status change from WaitingForReturnCodeFile to Done [2018-11-03 21:34:23,88] [error] WorkflowManagerActor Workflow 012966a2-46c5-45b8-9c9f-c9da472a75d2 failed (during ExecutingWorkflowState): Job atac.trim_adapter:0:1 exited with return code 1 which has not been declared as a valid return code. See 'continueOnReturnCode' runtime attribute for more details. Check the content of stderr for potential additional information: /home/jtobias/atac-seq-pipeline/cromwell-executions/atac/012966a2-46c5-45b8-9c9f-c9da472a75d2/call-trim_adapter/shard-0/execution/stderr. multiprocessing.pool.RemoteTraceback: """ Traceback (most recent call last): File "/home/jtobias/software/miniconda3/envs/encode-atac-seq-pipeline/bin/encode_common.py", line 226, in run_shell_cmd p.returncode, cmd) subprocess.CalledProcessError: Command 'cutadapt -m 5 -e 0.1 -a CTGTCTCTTATA -A CTGTCTCTTATA /home/jtobias/atac-seq-pipeline/cromwell-executions/atac/012966a2-46c5-45b8-9c9f-c9da472a75d2/call-trim_adapter/shard-0/inputs/589122742/ENCFF341MYG.subsampled.400.fastq.gz /home/jtobias/atac-seq-pipeline/cromwell-executions/atac/012966a2-46c5-45b8-9c9f-c9da472a75d2/call-trim_adapter/shard-0/inputs/589122743/ENCFF248EJF.subsampled.400.fastq.gz -o ENCFF341MYG.subsampled.400.trim.fastq.gz -p ENCFF248EJF.subsampled.400.trim.fastq.gz' returned non-zero exit status 126. During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/home/jtobias/software/miniconda3/lib/python3.7/multiprocessing/pool.py", line 121, in worker result = (True, func(*args, **kwds)) File "/home/jtobias/software/miniconda3/envs/encode-atac-seq-pipeline/bin/encode_trim_adapter.py", line 124, in trim_adapter_pe run_shell_cmd(cmd) File "/home/jtobias/software/miniconda3/envs/encode-atac-seq-pipeline/bin/encode_common.py", line 235, in run_shell_cmd raise Exception('Exception caught. Killed PID={}, PGID={}'.format(pid,pgid)) Exception: Exception caught. Killed PID=25589, PGID=25589 """ The above exception was the direct cause of the following exception: Traceback (most recent call last): File "/home/jtobias/software/miniconda3/envs/encode-atac-seq-pipeline/bin/encode_trim_adapter.py", line 269, in main() File "/home/jtobias/software/miniconda3/envs/encode-atac-seq-pipeline/bin/encode_trim_adapter.py", line 233, in main fastqs = ret_val.get(BIG_INT) File "/home/jtobias/software/miniconda3/lib/python3.7/multiprocessing/pool.py", line 657, in get raise self._value Exception: Exception caught. Killed PID=25589, PGID=25589 Job atac.trim_adapter:1:1 exited with return code 1 which has not been declared as a valid return code. See 'continueOnReturnCode' runtime attribute for more details. Check the content of stderr for potential additional information: /home/jtobias/atac-seq-pipeline/cromwell-executions/atac/012966a2-46c5-45b8-9c9f-c9da472a75d2/call-trim_adapter/shard-1/execution/stderr. multiprocessing.pool.RemoteTraceback: """ Traceback (most recent call last): File "/home/jtobias/software/miniconda3/envs/encode-atac-seq-pipeline/bin/encode_common.py", line 226, in run_shell_cmd p.returncode, cmd) subprocess.CalledProcessError: Command 'cutadapt -m 5 -e 0.1 -a CTGTCTCTTATA -A CTGTCTCTTATA /home/jtobias/atac-seq-pipeline/cromwell-executions/atac/012966a2-46c5-45b8-9c9f-c9da472a75d2/call-trim_adapter/shard-1/inputs/1476626423/ENCFF641SFZ.subsampled.400.fastq.gz /home/jtobias/atac-seq-pipeline/cromwell-executions/atac/012966a2-46c5-45b8-9c9f-c9da472a75d2/call-trim_adapter/shard-1/inputs/1476626424/ENCFF031ARQ.subsampled.400.fastq.gz -o ENCFF641SFZ.subsampled.400.trim.fastq.gz -p ENCFF031ARQ.subsampled.400.trim.fastq.gz' returned non-zero exit status 126. During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/home/jtobias/software/miniconda3/lib/python3.7/multiprocessing/pool.py", line 121, in worker result = (True, func(*args, **kwds)) File "/home/jtobias/software/miniconda3/envs/encode-atac-seq-pipeline/bin/encode_trim_adapter.py", line 124, in trim_adapter_pe run_shell_cmd(cmd) File "/home/jtobias/software/miniconda3/envs/encode-atac-seq-pipeline/bin/encode_common.py", line 235, in run_shell_cmd raise Exception('Exception caught. Killed PID={}, PGID={}'.format(pid,pgid)) Exception: Exception caught. Killed PID=25614, PGID=25614 """ The above exception was the direct cause of the following exception: Traceback (most recent call last): File "/home/jtobias/software/miniconda3/envs/encode-atac-seq-pipeline/bin/encode_trim_adapter.py", line 269, in main() File "/home/jtobias/software/miniconda3/envs/encode-atac-seq-pipeline/bin/encode_trim_adapter.py", line 233, in main fastqs = ret_val.get(BIG_INT) File "/home/jtobias/software/miniconda3/lib/python3.7/multiprocessing/pool.py", line 657, in get raise self._value Exception: Exception caught. Killed PID=25614, PGID=25614 [2018-11-03 21:34:23,89] [info] WorkflowManagerActor WorkflowActor-012966a2-46c5-45b8-9c9f-c9da472a75d2 is in a terminal state: WorkflowFailedState [2018-11-03 21:34:29,66] [info] SingleWorkflowRunnerActor workflow finished with status 'Failed'. [2018-11-03 21:34:30,91] [info] Workflow polling stopped [2018-11-03 21:34:30,96] [info] Shutting down WorkflowStoreActor - Timeout = 5 seconds [2018-11-03 21:34:30,96] [info] Shutting down WorkflowLogCopyRouter - Timeout = 5 seconds [2018-11-03 21:34:30,96] [info] Shutting down JobExecutionTokenDispenser - Timeout = 5 seconds [2018-11-03 21:34:30,96] [info] Aborting all running workflows. [2018-11-03 21:34:30,96] [info] JobExecutionTokenDispenser stopped [2018-11-03 21:34:30,97] [info] WorkflowStoreActor stopped [2018-11-03 21:34:30,97] [info] WorkflowLogCopyRouter stopped [2018-11-03 21:34:30,97] [info] Shutting down WorkflowManagerActor - Timeout = 3600 seconds [2018-11-03 21:34:30,97] [info] WorkflowManagerActor All workflows finished [2018-11-03 21:34:30,97] [info] WorkflowManagerActor stopped [2018-11-03 21:34:30,97] [info] Connection pools shut down [2018-11-03 21:34:30,97] [info] Shutting down SubWorkflowStoreActor - Timeout = 1800 seconds [2018-11-03 21:34:30,97] [info] Shutting down JobStoreActor - Timeout = 1800 seconds [2018-11-03 21:34:30,97] [info] SubWorkflowStoreActor stopped [2018-11-03 21:34:30,97] [info] Shutting down CallCacheWriteActor - Timeout = 1800 seconds [2018-11-03 21:34:30,97] [info] Shutting down ServiceRegistryActor - Timeout = 1800 seconds [2018-11-03 21:34:30,97] [info] Shutting down DockerHashActor - Timeout = 1800 seconds [2018-11-03 21:34:30,97] [info] JobStoreActor stopped [2018-11-03 21:34:30,97] [info] CallCacheWriteActor Shutting down: 0 queued messages to process [2018-11-03 21:34:30,97] [info] Shutting down IoProxy - Timeout = 1800 seconds [2018-11-03 21:34:30,97] [info] WriteMetadataActor Shutting down: 0 queued messages to process [2018-11-03 21:34:30,97] [info] CallCacheWriteActor stopped [2018-11-03 21:34:30,97] [info] DockerHashActor stopped [2018-11-03 21:34:30,97] [info] KvWriteActor Shutting down: 0 queued messages to process [2018-11-03 21:34:30,97] [info] IoProxy stopped [2018-11-03 21:34:30,97] [info] ServiceRegistryActor stopped [2018-11-03 21:34:30,99] [info] Database closed [2018-11-03 21:34:30,99] [info] Stream materializer shut down Workflow 012966a2-46c5-45b8-9c9f-c9da472a75d2 transitioned to state Failed [2018-11-03 21:34:31,02] [info] Automatic shutdown of the async connection [2018-11-03 21:34:31,02] [info] Gracefully shutdown sentry threads. [2018-11-03 21:34:31,02] [info] Shutdown finished.