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Leah Kemp and others added 22 commits November 3, 2020 14:55
* Add test dataset

* Add info on test dataset

* Automate setting up to run test dataset
* minor changes to runscripts

* update docs to state of human_genomics_pipeline docs

* woops

* probably an overstatement for this pipeline

* forgot to update

* add description of pipeline steps

* add more info

* update
* remove unnecessary code

* put code into functions to avoid global variables

* forgot to add some stuff to README

* snakemake doesn't allow functions for outputs - fix
* remove need for user to write flag stuff in config

* forgot to remove hardcoding again woops
* use parabricks for filtering in cohort analyses

* update rulegraphs

* pbrun vqsr can't take files named g.vcf
@leahkemp leahkemp changed the title Dev Release version 1.0.1 Apr 19, 2022
@leahkemp leahkemp changed the title Release version 1.0.1 Release version 1.1.0 Apr 19, 2022
@leahkemp leahkemp merged commit bc07af7 into master Apr 19, 2022
@leahkemp leahkemp deleted the dev branch April 19, 2022 13:51
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2 participants