run.xml

<?xml version='1.0' encoding='UTF-8'?>
<RUN_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:noNamespaceSchemaLocation="ftp://ftp.sra.ebi.ac.uk/meta/xsd/sra_1_5/sra_1_5/SRA.run.xsd">
  <RUN alias="TODO: Submitter designated name for the 'Run'. The name must be unique within the submission account." center_name="TODO: The center name (its acronym) of the submitter's account" broker_name="TODO: The center name (its acronym) of the broker if applicable, if not, remove this attribute (broker_name)" run_date="TODO: ISO date when the run took place (e.g. '2001-12-17T09:30:47Z'). If the time stamp is unknown, leave it as 0s (e.g. 2008-07-02T00:00:00)" run_center="TODO: If applicable, the name of the contract sequencing center that executed the run (e.g. 454MSC). Remove this attribute otherwise.">
    <TITLE>TODO: Short text that can be used to define submissions in searches or in displays.</TITLE>    <!-- Optional block -->
    <EXPERIMENT_REF refname="TODO: Identifies the parent experiment (that encompasses this run) by name within the namespace defined by attribute 'refcenter'." refcenter="TODO: Acronym of the center name used to submit the referenced experiment."/>
    <DATA_BLOCK member_name="TODO: Optional name (alias) given in the experiment XML of a pooled experiment. Use exclusively with demultiplexed data, otherwise, remove this attribute (member_name)">    <!-- Optional block -->
      <FILES>
        <FILE filename="TODO: The name or relative pathname of a run data file (e.g. path/to/files/file.fastq)" filetype="TODO: The run data file type. Must be value from Controlled vocabulary: 'sra', 'srf', 'sff', 'fastq', 'fasta', 'tab', '454_native', '454_native_seq', '454_native_qual', 'Helicos_native', 'Illumina_native', 'Illumina_native_seq', 'Illumina_native_prb', 'Illumina_native_int', 'Illumina_native_qseq', 'Illumina_native_scarf', 'SOLiD_native', 'SOLiD_native_csfasta', 'SOLiD_native_qual', 'PacBio_HDF5', 'bam', 'cram', 'CompleteGenomics_native', 'OxfordNanopore_native'" checksum_method="MD5" checksum="TODO: CHECKSUM from encrypted file (e.g. 298ee70555532679d7c1f91b5dd07aef)" unencrypted_checksum="TODO: CHECKSUM from unencrypted file (e.g. e609bc52c035ff1a62cdba0f0689889j)" quality_scoring_system="TODO: How the input data are scored for quality (either 'phred' or 'log-odds')." quality_encoding="TODO: Character used in representing the minimum quality value (choose from 'ascii', 'decimal' or 'hexadecimal'). Helps specify how to decode text rendering of quality data. " ascii_offset="TODO: Character used in representing the minimum quality value (e.g. '!' or '@').  Helps specify how to decode text rendering of quality data."/>
        <!-- In case you want to provide several files, repeat the tag <FILE> here as many times as needed. -->
      </FILES>
    </DATA_BLOCK>
    <RUN_ATTRIBUTES>    <!-- Optional block -->
      <RUN_ATTRIBUTE>
        <TAG>TODO: Name of the custom attribute.</TAG>
        <VALUE>TODO: Value of the custom attribute.</VALUE>
        <UNITS>TODO: Optional scientific units.</UNITS>
      </RUN_ATTRIBUTE>
      <!-- In case you want to provide several run attributes, repeat the tag <RUN_ATTRIBUTE> (with at least TAG and VALUE) here as many times as needed. -->
    </RUN_ATTRIBUTES>
  </RUN>
  <!--  If you are submitting more than one Run, replicate the block <RUN> here, 
        as many times as necessary.  -->
</RUN_SET>