EcoGRAPH: Ecological and Geospatial Research and Applications in Planetary Health
- University of Oklahoma
- mcwimberly@ou.edu
Repositories
-
twst_event_detection_demo
Project with code accompaniment to article in BMC Public Health: "Comparing Malaria Early Detection Methods in a Declining Transmission Setting in Northwestern Ethiopia." Uses synthetic data for demonstration purposes ONLY.
-
-
clusterapply
Apply a function in parallel on data sets that are split by some factor variable
-
-
ArboMAP
Arbovirus Modeling and Prediction to Forecast Mosquito-Borne Disease Outbreaks
-
epidemiar
R package with modeling, forecasting, and early detection & early warning alerts code for EPIDEMIA forecasting reports. The Epidemic Prognosis Incorporating Disease and Environmental Monitoring for Integrated Assessment (EPIDEMIA) Forecasting System is a set of tools coded in free, open-access software, that integrate surveillance and environmen…
-
epidemiar-demo
Demo R project to be used with package epidemiar for environmentally mediated disease modeling and forecasting, integrating data from epidemiological surveillance & environmental drivers. Demo is for malaria in Amhara region, Ethiopia. Epidemiological data are artificial and should not be used for research or public health. Find epidemiar here: h…
-
epidemia_gee
A python package which can be used in R to get the required environmental data for EPIDEMIA forecasting. Demo script EPIDEMIA_GEE_python.R in https://github.com/EcoGRAPH/epidemiar-demo/ under the GEE folder
-
bambyfactor
streamlined example of distributed lags in bam and various methods of solution
-
r_workshop_epidemia
Tutorials for an introduction to R and using the EPIDEMIA forecasting system.
