From c5a776e02d79e431bd8ec2dc24a0c282b4480ad7 Mon Sep 17 00:00:00 2001 From: Anika Luo Date: Wed, 22 Jun 2022 15:35:20 -0400 Subject: [PATCH 1/4] add Pluto --- Project.toml | 1 + 1 file changed, 1 insertion(+) diff --git a/Project.toml b/Project.toml index 05fb9d1..83ab308 100644 --- a/Project.toml +++ b/Project.toml @@ -11,6 +11,7 @@ Dictionaries = "85a47980-9c8c-11e8-2b9f-f7ca1fa99fb4" Distances = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" EcoBase = "a58aae7d-b440-5a11-b283-399458f99aac" MultivariateStats = "6f286f6a-111f-5878-ab1e-185364afe411" +Pluto = "c3e4b0f8-55cb-11ea-2926-15256bba5781" ReTest = "e0db7c4e-2690-44b9-bad6-7687da720f89" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" From 4fa87134dd087acea2731785be880188e2617bd5 Mon Sep 17 00:00:00 2001 From: Anika Luo Date: Wed, 22 Jun 2022 15:38:35 -0400 Subject: [PATCH 2/4] create tutorial file --- presentation/tutorial.jl | 11 +++++++++++ 1 file changed, 11 insertions(+) create mode 100644 presentation/tutorial.jl diff --git a/presentation/tutorial.jl b/presentation/tutorial.jl new file mode 100644 index 0000000..b04daca --- /dev/null +++ b/presentation/tutorial.jl @@ -0,0 +1,11 @@ +### A Pluto.jl notebook ### +# v0.19.9 + +using Markdown +using InteractiveUtils + +# ╔═╡ bd9652fc-f262-11ec-3cf6-71de5b26f0f0 + + +# ╔═╡ Cell order: +# ╠═bd9652fc-f262-11ec-3cf6-71de5b26f0f0 From 9cd048f51357b2a014cfccaf194161b6aaebac5d Mon Sep 17 00:00:00 2001 From: Anika Luo Date: Wed, 22 Jun 2022 15:41:02 -0400 Subject: [PATCH 3/4] outline --- presentation/tutorial.jl | 28 +++++++++++++++++++++++++++- 1 file changed, 27 insertions(+), 1 deletion(-) diff --git a/presentation/tutorial.jl b/presentation/tutorial.jl index b04daca..5428bba 100644 --- a/presentation/tutorial.jl +++ b/presentation/tutorial.jl @@ -5,7 +5,33 @@ using Markdown using InteractiveUtils # ╔═╡ bd9652fc-f262-11ec-3cf6-71de5b26f0f0 +md""" +# Microbiome.jl tutorial +""" +# ╔═╡ 8d01fe33-6610-44b1-800a-5fba9224359c +md""" +## Download microbial community data +""" + +# ╔═╡ f5decd43-03ca-40ce-89a0-2cb74fa0fa70 +md""" +## Download metadata +""" + +# ╔═╡ c4df70fd-ea07-4601-846a-b492baed4d60 +md""" +## Load data and metadata into Microbiome.jl +""" + +# ╔═╡ 42ff9700-8d33-41b0-915a-acb6202bc227 +md""" +## Create Principal Coordinate Analysis (PCoA) +""" # ╔═╡ Cell order: -# ╠═bd9652fc-f262-11ec-3cf6-71de5b26f0f0 +# ╟─bd9652fc-f262-11ec-3cf6-71de5b26f0f0 +# ╟─8d01fe33-6610-44b1-800a-5fba9224359c +# ╟─f5decd43-03ca-40ce-89a0-2cb74fa0fa70 +# ╟─c4df70fd-ea07-4601-846a-b492baed4d60 +# ╟─42ff9700-8d33-41b0-915a-acb6202bc227 From fe52c431023d46801c4ed033cce71d0b99262794 Mon Sep 17 00:00:00 2001 From: Anika Luo Date: Fri, 24 Jun 2022 13:03:04 -0400 Subject: [PATCH 4/4] separate tutorial Profject.toml --- Project.toml | 1 - tutorial/Project.toml | 2 ++ {presentation => tutorial}/tutorial.jl | 0 3 files changed, 2 insertions(+), 1 deletion(-) create mode 100644 tutorial/Project.toml rename {presentation => tutorial}/tutorial.jl (100%) diff --git a/Project.toml b/Project.toml index 83ab308..05fb9d1 100644 --- a/Project.toml +++ b/Project.toml @@ -11,7 +11,6 @@ Dictionaries = "85a47980-9c8c-11e8-2b9f-f7ca1fa99fb4" Distances = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" EcoBase = "a58aae7d-b440-5a11-b283-399458f99aac" MultivariateStats = "6f286f6a-111f-5878-ab1e-185364afe411" -Pluto = "c3e4b0f8-55cb-11ea-2926-15256bba5781" ReTest = "e0db7c4e-2690-44b9-bad6-7687da720f89" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" diff --git a/tutorial/Project.toml b/tutorial/Project.toml new file mode 100644 index 0000000..c39603e --- /dev/null +++ b/tutorial/Project.toml @@ -0,0 +1,2 @@ +[deps] +Pluto = "c3e4b0f8-55cb-11ea-2926-15256bba5781" diff --git a/presentation/tutorial.jl b/tutorial/tutorial.jl similarity index 100% rename from presentation/tutorial.jl rename to tutorial/tutorial.jl