******************************************************************************* [CheckM - tree] Placing bins in reference genome tree. ******************************************************************************* Identifying marker genes in 118 bins with 10 threads: Finished processing 0 of 118 (0.00%) bins. Finished processing 1 of 118 (0.85%) bins. Finished processing 2 of 118 (1.69%) bins. Finished processing 3 of 118 (2.54%) bins. Finished processing 4 of 118 (3.39%) bins. Finished processing 5 of 118 (4.24%) bins. Finished processing 6 of 118 (5.08%) bins. Finished processing 7 of 118 (5.93%) bins. Finished processing 8 of 118 (6.78%) bins. Finished processing 9 of 118 (7.63%) bins. Finished processing 10 of 118 (8.47%) bins. Finished processing 11 of 118 (9.32%) bins. Finished processing 12 of 118 (10.17%) bins. Finished processing 13 of 118 (11.02%) bins. Finished processing 14 of 118 (11.86%) bins. Finished processing 15 of 118 (12.71%) bins. Finished processing 16 of 118 (13.56%) bins. Finished processing 17 of 118 (14.41%) bins. Finished processing 18 of 118 (15.25%) bins. Finished processing 19 of 118 (16.10%) bins. Finished processing 20 of 118 (16.95%) bins. Finished processing 21 of 118 (17.80%) bins. Finished processing 22 of 118 (18.64%) bins. Finished processing 23 of 118 (19.49%) bins. Finished processing 24 of 118 (20.34%) bins. Finished processing 25 of 118 (21.19%) bins. Finished processing 26 of 118 (22.03%) bins. Finished processing 27 of 118 (22.88%) bins. Finished processing 28 of 118 (23.73%) bins. Finished processing 29 of 118 (24.58%) bins. Finished processing 30 of 118 (25.42%) bins. Finished processing 31 of 118 (26.27%) bins. Finished processing 32 of 118 (27.12%) bins. Finished processing 33 of 118 (27.97%) bins. Finished processing 34 of 118 (28.81%) bins. Finished processing 35 of 118 (29.66%) bins. Finished processing 36 of 118 (30.51%) bins. Finished processing 37 of 118 (31.36%) bins. Finished processing 38 of 118 (32.20%) bins. Finished processing 39 of 118 (33.05%) bins. Finished processing 40 of 118 (33.90%) bins. Finished processing 41 of 118 (34.75%) bins. Finished processing 42 of 118 (35.59%) bins. Finished processing 43 of 118 (36.44%) bins. Finished processing 44 of 118 (37.29%) bins. Finished processing 45 of 118 (38.14%) bins. Finished processing 46 of 118 (38.98%) bins. Finished processing 47 of 118 (39.83%) bins. Finished processing 48 of 118 (40.68%) bins. Finished processing 49 of 118 (41.53%) bins. Finished processing 50 of 118 (42.37%) bins. Finished processing 51 of 118 (43.22%) bins. Finished processing 52 of 118 (44.07%) bins. Finished processing 53 of 118 (44.92%) bins. Finished processing 54 of 118 (45.76%) bins. Finished processing 55 of 118 (46.61%) bins. Finished processing 56 of 118 (47.46%) bins. Finished processing 57 of 118 (48.31%) bins. Finished processing 58 of 118 (49.15%) bins. Finished processing 59 of 118 (50.00%) bins. Finished processing 60 of 118 (50.85%) bins. Finished processing 61 of 118 (51.69%) bins. Finished processing 62 of 118 (52.54%) bins. Finished processing 63 of 118 (53.39%) bins. Finished processing 64 of 118 (54.24%) bins. Finished processing 65 of 118 (55.08%) bins. Finished processing 66 of 118 (55.93%) bins. Finished processing 67 of 118 (56.78%) bins. Finished processing 68 of 118 (57.63%) bins. Finished processing 69 of 118 (58.47%) bins. Finished processing 70 of 118 (59.32%) bins. Finished processing 71 of 118 (60.17%) bins. Finished processing 72 of 118 (61.02%) bins. Finished processing 73 of 118 (61.86%) bins. Finished processing 74 of 118 (62.71%) bins. Finished processing 75 of 118 (63.56%) bins. Finished processing 76 of 118 (64.41%) bins. Finished processing 77 of 118 (65.25%) bins. Finished processing 78 of 118 (66.10%) bins. Finished processing 79 of 118 (66.95%) bins. Finished processing 80 of 118 (67.80%) bins. Finished processing 81 of 118 (68.64%) bins. Finished processing 82 of 118 (69.49%) bins. Finished processing 83 of 118 (70.34%) bins. Finished processing 84 of 118 (71.19%) bins. Finished processing 85 of 118 (72.03%) bins. Finished processing 86 of 118 (72.88%) bins. Finished processing 87 of 118 (73.73%) bins. Finished processing 88 of 118 (74.58%) bins. Finished processing 89 of 118 (75.42%) bins. Finished processing 90 of 118 (76.27%) bins. Finished processing 91 of 118 (77.12%) bins. Finished processing 92 of 118 (77.97%) bins. Finished processing 93 of 118 (78.81%) bins. Finished processing 94 of 118 (79.66%) bins. Finished processing 95 of 118 (80.51%) bins. Finished processing 96 of 118 (81.36%) bins. Finished processing 97 of 118 (82.20%) bins. Finished processing 98 of 118 (83.05%) bins. Finished processing 99 of 118 (83.90%) bins. Finished processing 100 of 118 (84.75%) bins. Finished processing 101 of 118 (85.59%) bins. Finished processing 102 of 118 (86.44%) bins. Finished processing 103 of 118 (87.29%) bins. Finished processing 104 of 118 (88.14%) bins. Finished processing 105 of 118 (88.98%) bins. Finished processing 106 of 118 (89.83%) bins. Finished processing 107 of 118 (90.68%) bins. Finished processing 108 of 118 (91.53%) bins. Finished processing 109 of 118 (92.37%) bins. Finished processing 110 of 118 (93.22%) bins. Finished processing 111 of 118 (94.07%) bins. Finished processing 112 of 118 (94.92%) bins. Finished processing 113 of 118 (95.76%) bins. Finished processing 114 of 118 (96.61%) bins. Finished processing 115 of 118 (97.46%) bins. Finished processing 116 of 118 (98.31%) bins. Finished processing 117 of 118 (99.15%) bins. Finished processing 118 of 118 (100.00%) bins. Saving HMM info to file. Calculating genome statistics for 118 bins with 10 threads: Finished processing 0 of 118 (0.00%) bins. Finished processing 1 of 118 (0.85%) bins. Finished processing 2 of 118 (1.69%) bins. Finished processing 3 of 118 (2.54%) bins. Finished processing 4 of 118 (3.39%) bins. Finished processing 5 of 118 (4.24%) bins. Finished processing 6 of 118 (5.08%) bins. Finished processing 7 of 118 (5.93%) bins. Finished processing 8 of 118 (6.78%) bins. Finished processing 9 of 118 (7.63%) bins. Finished processing 10 of 118 (8.47%) bins. Finished processing 11 of 118 (9.32%) bins. Finished processing 12 of 118 (10.17%) bins. Finished processing 13 of 118 (11.02%) bins. Finished processing 14 of 118 (11.86%) bins. Finished processing 15 of 118 (12.71%) bins. Finished processing 16 of 118 (13.56%) bins. Finished processing 17 of 118 (14.41%) bins. Finished processing 18 of 118 (15.25%) bins. Finished processing 19 of 118 (16.10%) bins. Finished processing 20 of 118 (16.95%) bins. Finished processing 21 of 118 (17.80%) bins. Finished processing 22 of 118 (18.64%) bins. Finished processing 23 of 118 (19.49%) bins. Finished processing 24 of 118 (20.34%) bins. Finished processing 25 of 118 (21.19%) bins. Finished processing 26 of 118 (22.03%) bins. Finished processing 27 of 118 (22.88%) bins. Finished processing 28 of 118 (23.73%) bins. Finished processing 29 of 118 (24.58%) bins. Finished processing 30 of 118 (25.42%) bins. Finished processing 31 of 118 (26.27%) bins. Finished processing 32 of 118 (27.12%) bins. Finished processing 33 of 118 (27.97%) bins. Finished processing 34 of 118 (28.81%) bins. Finished processing 35 of 118 (29.66%) bins. Finished processing 36 of 118 (30.51%) bins. Finished processing 37 of 118 (31.36%) bins. Finished processing 38 of 118 (32.20%) bins. Finished processing 39 of 118 (33.05%) bins. Finished processing 40 of 118 (33.90%) bins. Finished processing 41 of 118 (34.75%) bins. Finished processing 42 of 118 (35.59%) bins. Finished processing 43 of 118 (36.44%) bins. Finished processing 44 of 118 (37.29%) bins. Finished processing 45 of 118 (38.14%) bins. Finished processing 46 of 118 (38.98%) bins. Finished processing 47 of 118 (39.83%) bins. Finished processing 48 of 118 (40.68%) bins. Finished processing 49 of 118 (41.53%) bins. Finished processing 50 of 118 (42.37%) bins. Finished processing 51 of 118 (43.22%) bins. Finished processing 52 of 118 (44.07%) bins. Finished processing 53 of 118 (44.92%) bins. Finished processing 54 of 118 (45.76%) bins. Finished processing 55 of 118 (46.61%) bins. Finished processing 56 of 118 (47.46%) bins. Finished processing 57 of 118 (48.31%) bins. Finished processing 58 of 118 (49.15%) bins. Finished processing 59 of 118 (50.00%) bins. Finished processing 60 of 118 (50.85%) bins. Finished processing 61 of 118 (51.69%) bins. Finished processing 62 of 118 (52.54%) bins. Finished processing 63 of 118 (53.39%) bins. Finished processing 64 of 118 (54.24%) bins. Finished processing 65 of 118 (55.08%) bins. Finished processing 66 of 118 (55.93%) bins. Finished processing 67 of 118 (56.78%) bins. Finished processing 68 of 118 (57.63%) bins. Finished processing 69 of 118 (58.47%) bins. Finished processing 70 of 118 (59.32%) bins. Finished processing 71 of 118 (60.17%) bins. Finished processing 72 of 118 (61.02%) bins. Finished processing 73 of 118 (61.86%) bins. Finished processing 74 of 118 (62.71%) bins. Finished processing 75 of 118 (63.56%) bins. Finished processing 76 of 118 (64.41%) bins. Finished processing 77 of 118 (65.25%) bins. Finished processing 78 of 118 (66.10%) bins. Finished processing 79 of 118 (66.95%) bins. Finished processing 80 of 118 (67.80%) bins. Finished processing 81 of 118 (68.64%) bins. Finished processing 82 of 118 (69.49%) bins. Finished processing 83 of 118 (70.34%) bins. Finished processing 84 of 118 (71.19%) bins. Finished processing 85 of 118 (72.03%) bins. Finished processing 86 of 118 (72.88%) bins. Finished processing 87 of 118 (73.73%) bins. Finished processing 88 of 118 (74.58%) bins. Finished processing 89 of 118 (75.42%) bins. Finished processing 90 of 118 (76.27%) bins. Finished processing 91 of 118 (77.12%) bins. Finished processing 92 of 118 (77.97%) bins. Finished processing 93 of 118 (78.81%) bins. Finished processing 94 of 118 (79.66%) bins. Finished processing 95 of 118 (80.51%) bins. Finished processing 96 of 118 (81.36%) bins. Finished processing 97 of 118 (82.20%) bins. Finished processing 98 of 118 (83.05%) bins. Finished processing 99 of 118 (83.90%) bins. Finished processing 100 of 118 (84.75%) bins. Finished processing 101 of 118 (85.59%) bins. Finished processing 102 of 118 (86.44%) bins. Finished processing 103 of 118 (87.29%) bins. Finished processing 104 of 118 (88.14%) bins. Finished processing 105 of 118 (88.98%) bins. Finished processing 106 of 118 (89.83%) bins. Finished processing 107 of 118 (90.68%) bins. Finished processing 108 of 118 (91.53%) bins. Finished processing 109 of 118 (92.37%) bins. Finished processing 110 of 118 (93.22%) bins. Finished processing 111 of 118 (94.07%) bins. Finished processing 112 of 118 (94.92%) bins. Finished processing 113 of 118 (95.76%) bins. Finished processing 114 of 118 (96.61%) bins. Finished processing 115 of 118 (97.46%) bins. Finished processing 116 of 118 (98.31%) bins. Finished processing 117 of 118 (99.15%) bins. Finished processing 118 of 118 (100.00%) bins. Extracting marker genes to align. Parsing HMM hits to marker genes: Finished parsing hits for 1 of 118 (0.85%) bins. Finished parsing hits for 2 of 118 (1.69%) bins. Finished parsing hits for 3 of 118 (2.54%) bins. Finished parsing hits for 4 of 118 (3.39%) bins. Finished parsing hits for 5 of 118 (4.24%) bins. Finished parsing hits for 6 of 118 (5.08%) bins. Finished parsing hits for 7 of 118 (5.93%) bins. Finished parsing hits for 8 of 118 (6.78%) bins. Finished parsing hits for 9 of 118 (7.63%) bins. Finished parsing hits for 10 of 118 (8.47%) bins. Finished parsing hits for 11 of 118 (9.32%) bins. Finished parsing hits for 12 of 118 (10.17%) bins. Finished parsing hits for 13 of 118 (11.02%) bins. Finished parsing hits for 14 of 118 (11.86%) bins. Finished parsing hits for 15 of 118 (12.71%) bins. Finished parsing hits for 16 of 118 (13.56%) bins. Finished parsing hits for 17 of 118 (14.41%) bins. Finished parsing hits for 18 of 118 (15.25%) bins. Finished parsing hits for 19 of 118 (16.10%) bins. Finished parsing hits for 20 of 118 (16.95%) bins. Finished parsing hits for 21 of 118 (17.80%) bins. Finished parsing hits for 22 of 118 (18.64%) bins. Finished parsing hits for 23 of 118 (19.49%) bins. Finished parsing hits for 24 of 118 (20.34%) bins. Finished parsing hits for 25 of 118 (21.19%) bins. Finished parsing hits for 26 of 118 (22.03%) bins. Finished parsing hits for 27 of 118 (22.88%) bins. Finished parsing hits for 28 of 118 (23.73%) bins. Finished parsing hits for 29 of 118 (24.58%) bins. Finished parsing hits for 30 of 118 (25.42%) bins. Finished parsing hits for 31 of 118 (26.27%) bins. Finished parsing hits for 32 of 118 (27.12%) bins. Finished parsing hits for 33 of 118 (27.97%) bins. Finished parsing hits for 34 of 118 (28.81%) bins. Finished parsing hits for 35 of 118 (29.66%) bins. Finished parsing hits for 36 of 118 (30.51%) bins. Finished parsing hits for 37 of 118 (31.36%) bins. Finished parsing hits for 38 of 118 (32.20%) bins. Finished parsing hits for 39 of 118 (33.05%) bins. Finished parsing hits for 40 of 118 (33.90%) bins. Finished parsing hits for 41 of 118 (34.75%) bins. Finished parsing hits for 42 of 118 (35.59%) bins. Finished parsing hits for 43 of 118 (36.44%) bins. Finished parsing hits for 44 of 118 (37.29%) bins. Finished parsing hits for 45 of 118 (38.14%) bins. Finished parsing hits for 46 of 118 (38.98%) bins. Finished parsing hits for 47 of 118 (39.83%) bins. Finished parsing hits for 48 of 118 (40.68%) bins. Finished parsing hits for 49 of 118 (41.53%) bins. Finished parsing hits for 50 of 118 (42.37%) bins. Finished parsing hits for 51 of 118 (43.22%) bins. Finished parsing hits for 52 of 118 (44.07%) bins. Finished parsing hits for 53 of 118 (44.92%) bins. Finished parsing hits for 54 of 118 (45.76%) bins. Finished parsing hits for 55 of 118 (46.61%) bins. Finished parsing hits for 56 of 118 (47.46%) bins. Finished parsing hits for 57 of 118 (48.31%) bins. Finished parsing hits for 58 of 118 (49.15%) bins. Finished parsing hits for 59 of 118 (50.00%) bins. Finished parsing hits for 60 of 118 (50.85%) bins. Finished parsing hits for 61 of 118 (51.69%) bins. Finished parsing hits for 62 of 118 (52.54%) bins. Finished parsing hits for 63 of 118 (53.39%) bins. Finished parsing hits for 64 of 118 (54.24%) bins. Finished parsing hits for 65 of 118 (55.08%) bins. Finished parsing hits for 66 of 118 (55.93%) bins. Finished parsing hits for 67 of 118 (56.78%) bins. Finished parsing hits for 68 of 118 (57.63%) bins. Finished parsing hits for 69 of 118 (58.47%) bins. Finished parsing hits for 70 of 118 (59.32%) bins. Finished parsing hits for 71 of 118 (60.17%) bins. Finished parsing hits for 72 of 118 (61.02%) bins. Finished parsing hits for 73 of 118 (61.86%) bins. Finished parsing hits for 74 of 118 (62.71%) bins. Finished parsing hits for 75 of 118 (63.56%) bins. Finished parsing hits for 76 of 118 (64.41%) bins. Finished parsing hits for 77 of 118 (65.25%) bins. Finished parsing hits for 78 of 118 (66.10%) bins. Finished parsing hits for 79 of 118 (66.95%) bins. Finished parsing hits for 80 of 118 (67.80%) bins. Finished parsing hits for 81 of 118 (68.64%) bins. Finished parsing hits for 82 of 118 (69.49%) bins. Finished parsing hits for 83 of 118 (70.34%) bins. Finished parsing hits for 84 of 118 (71.19%) bins. Finished parsing hits for 85 of 118 (72.03%) bins. Finished parsing hits for 86 of 118 (72.88%) bins. Finished parsing hits for 87 of 118 (73.73%) bins. Finished parsing hits for 88 of 118 (74.58%) bins. Finished parsing hits for 89 of 118 (75.42%) bins. Finished parsing hits for 90 of 118 (76.27%) bins. Finished parsing hits for 91 of 118 (77.12%) bins. Finished parsing hits for 92 of 118 (77.97%) bins. Finished parsing hits for 93 of 118 (78.81%) bins. Finished parsing hits for 94 of 118 (79.66%) bins. Finished parsing hits for 95 of 118 (80.51%) bins. Finished parsing hits for 96 of 118 (81.36%) bins. Finished parsing hits for 97 of 118 (82.20%) bins. Finished parsing hits for 98 of 118 (83.05%) bins. Finished parsing hits for 99 of 118 (83.90%) bins. Finished parsing hits for 100 of 118 (84.75%) bins. Finished parsing hits for 101 of 118 (85.59%) bins. Finished parsing hits for 102 of 118 (86.44%) bins. Finished parsing hits for 103 of 118 (87.29%) bins. Finished parsing hits for 104 of 118 (88.14%) bins. Finished parsing hits for 105 of 118 (88.98%) bins. Finished parsing hits for 106 of 118 (89.83%) bins. Finished parsing hits for 107 of 118 (90.68%) bins. Finished parsing hits for 108 of 118 (91.53%) bins. Finished parsing hits for 109 of 118 (92.37%) bins. Finished parsing hits for 110 of 118 (93.22%) bins. Finished parsing hits for 111 of 118 (94.07%) bins. Finished parsing hits for 112 of 118 (94.92%) bins. Finished parsing hits for 113 of 118 (95.76%) bins. Finished parsing hits for 114 of 118 (96.61%) bins. Finished parsing hits for 115 of 118 (97.46%) bins. Finished parsing hits for 116 of 118 (98.31%) bins. Finished parsing hits for 117 of 118 (99.15%) bins. Finished parsing hits for 118 of 118 (100.00%) bins. Extracting 43 HMMs with 10 threads: Finished extracting 0 of 43 (0.00%) HMMs. Finished extracting 1 of 43 (2.33%) HMMs. Finished extracting 2 of 43 (4.65%) HMMs. Finished extracting 3 of 43 (6.98%) HMMs. Finished extracting 4 of 43 (9.30%) HMMs. Finished extracting 5 of 43 (11.63%) HMMs. Finished extracting 6 of 43 (13.95%) HMMs. Finished extracting 7 of 43 (16.28%) HMMs. Finished extracting 8 of 43 (18.60%) HMMs. Finished extracting 9 of 43 (20.93%) HMMs. Finished extracting 10 of 43 (23.26%) HMMs. Finished extracting 11 of 43 (25.58%) HMMs. Finished extracting 12 of 43 (27.91%) HMMs. Finished extracting 13 of 43 (30.23%) HMMs. Finished extracting 14 of 43 (32.56%) HMMs. Finished extracting 15 of 43 (34.88%) HMMs. Finished extracting 16 of 43 (37.21%) HMMs. Finished extracting 17 of 43 (39.53%) HMMs. Finished extracting 18 of 43 (41.86%) HMMs. Finished extracting 19 of 43 (44.19%) HMMs. Finished extracting 20 of 43 (46.51%) HMMs. Finished extracting 21 of 43 (48.84%) HMMs. Finished extracting 22 of 43 (51.16%) HMMs. Finished extracting 23 of 43 (53.49%) HMMs. Finished extracting 24 of 43 (55.81%) HMMs. Finished extracting 25 of 43 (58.14%) HMMs. Finished extracting 26 of 43 (60.47%) HMMs. Finished extracting 27 of 43 (62.79%) HMMs. Finished extracting 28 of 43 (65.12%) HMMs. Finished extracting 29 of 43 (67.44%) HMMs. Finished extracting 30 of 43 (69.77%) HMMs. Finished extracting 31 of 43 (72.09%) HMMs. Finished extracting 32 of 43 (74.42%) HMMs. Finished extracting 33 of 43 (76.74%) HMMs. Finished extracting 34 of 43 (79.07%) HMMs. Finished extracting 35 of 43 (81.40%) HMMs. Finished extracting 36 of 43 (83.72%) HMMs. Finished extracting 37 of 43 (86.05%) HMMs. Finished extracting 38 of 43 (88.37%) HMMs. Finished extracting 39 of 43 (90.70%) HMMs. Finished extracting 40 of 43 (93.02%) HMMs. Finished extracting 41 of 43 (95.35%) HMMs. Finished extracting 42 of 43 (97.67%) HMMs. Finished extracting 43 of 43 (100.00%) HMMs. Aligning 43 marker genes with 10 threads: Finished aligning 0 of 43 (0.00%) marker genes. Finished aligning 1 of 43 (2.33%) marker genes. Finished aligning 2 of 43 (4.65%) marker genes. Finished aligning 3 of 43 (6.98%) marker genes. Finished aligning 4 of 43 (9.30%) marker genes. Finished aligning 5 of 43 (11.63%) marker genes. Finished aligning 6 of 43 (13.95%) marker genes. Finished aligning 7 of 43 (16.28%) marker genes. Finished aligning 8 of 43 (18.60%) marker genes. Finished aligning 9 of 43 (20.93%) marker genes. Finished aligning 10 of 43 (23.26%) marker genes. Finished aligning 11 of 43 (25.58%) marker genes. Finished aligning 12 of 43 (27.91%) marker genes. Finished aligning 13 of 43 (30.23%) marker genes. Finished aligning 14 of 43 (32.56%) marker genes. Finished aligning 15 of 43 (34.88%) marker genes. Finished aligning 16 of 43 (37.21%) marker genes. Finished aligning 17 of 43 (39.53%) marker genes. Finished aligning 18 of 43 (41.86%) marker genes. Finished aligning 19 of 43 (44.19%) marker genes. Finished aligning 20 of 43 (46.51%) marker genes. Finished aligning 21 of 43 (48.84%) marker genes. Finished aligning 22 of 43 (51.16%) marker genes. Finished aligning 23 of 43 (53.49%) marker genes. Finished aligning 24 of 43 (55.81%) marker genes. Finished aligning 25 of 43 (58.14%) marker genes. Finished aligning 26 of 43 (60.47%) marker genes. Finished aligning 27 of 43 (62.79%) marker genes. Finished aligning 28 of 43 (65.12%) marker genes. Finished aligning 29 of 43 (67.44%) marker genes. Finished aligning 30 of 43 (69.77%) marker genes. Finished aligning 31 of 43 (72.09%) marker genes. Finished aligning 32 of 43 (74.42%) marker genes. Finished aligning 33 of 43 (76.74%) marker genes. Finished aligning 34 of 43 (79.07%) marker genes. Finished aligning 35 of 43 (81.40%) marker genes. Finished aligning 36 of 43 (83.72%) marker genes. Finished aligning 37 of 43 (86.05%) marker genes. Finished aligning 38 of 43 (88.37%) marker genes. Finished aligning 39 of 43 (90.70%) marker genes. Finished aligning 40 of 43 (93.02%) marker genes. Finished aligning 41 of 43 (95.35%) marker genes. Finished aligning 42 of 43 (97.67%) marker genes. Finished aligning 43 of 43 (100.00%) marker genes. Reading marker alignment files. Concatenating alignments. Placing 118 bins into the genome tree with pplacer (be patient). { Current stage: 0:19:18.141 || Total: 0:19:18.141 } ******************************************************************************* [CheckM - lineage_set] Inferring lineage-specific marker sets. ******************************************************************************* Reading HMM info from file. Parsing HMM hits to marker genes: Finished parsing hits for 1 of 118 (0.85%) bins. Finished parsing hits for 2 of 118 (1.69%) bins. Finished parsing hits for 3 of 118 (2.54%) bins. Finished parsing hits for 4 of 118 (3.39%) bins. Finished parsing hits for 5 of 118 (4.24%) bins. Finished parsing hits for 6 of 118 (5.08%) bins. Finished parsing hits for 7 of 118 (5.93%) bins. Finished parsing hits for 8 of 118 (6.78%) bins. Finished parsing hits for 9 of 118 (7.63%) bins. Finished parsing hits for 10 of 118 (8.47%) bins. Finished parsing hits for 11 of 118 (9.32%) bins. Finished parsing hits for 12 of 118 (10.17%) bins. Finished parsing hits for 13 of 118 (11.02%) bins. Finished parsing hits for 14 of 118 (11.86%) bins. Finished parsing hits for 15 of 118 (12.71%) bins. Finished parsing hits for 16 of 118 (13.56%) bins. Finished parsing hits for 17 of 118 (14.41%) bins. Finished parsing hits for 18 of 118 (15.25%) bins. Finished parsing hits for 19 of 118 (16.10%) bins. Finished parsing hits for 20 of 118 (16.95%) bins. Finished parsing hits for 21 of 118 (17.80%) bins. Finished parsing hits for 22 of 118 (18.64%) bins. Finished parsing hits for 23 of 118 (19.49%) bins. Finished parsing hits for 24 of 118 (20.34%) bins. Finished parsing hits for 25 of 118 (21.19%) bins. Finished parsing hits for 26 of 118 (22.03%) bins. Finished parsing hits for 27 of 118 (22.88%) bins. Finished parsing hits for 28 of 118 (23.73%) bins. Finished parsing hits for 29 of 118 (24.58%) bins. Finished parsing hits for 30 of 118 (25.42%) bins. Finished parsing hits for 31 of 118 (26.27%) bins. Finished parsing hits for 32 of 118 (27.12%) bins. Finished parsing hits for 33 of 118 (27.97%) bins. Finished parsing hits for 34 of 118 (28.81%) bins. Finished parsing hits for 35 of 118 (29.66%) bins. Finished parsing hits for 36 of 118 (30.51%) bins. Finished parsing hits for 37 of 118 (31.36%) bins. Finished parsing hits for 38 of 118 (32.20%) bins. Finished parsing hits for 39 of 118 (33.05%) bins. Finished parsing hits for 40 of 118 (33.90%) bins. Finished parsing hits for 41 of 118 (34.75%) bins. Finished parsing hits for 42 of 118 (35.59%) bins. Finished parsing hits for 43 of 118 (36.44%) bins. Finished parsing hits for 44 of 118 (37.29%) bins. Finished parsing hits for 45 of 118 (38.14%) bins. Finished parsing hits for 46 of 118 (38.98%) bins. Finished parsing hits for 47 of 118 (39.83%) bins. Finished parsing hits for 48 of 118 (40.68%) bins. Finished parsing hits for 49 of 118 (41.53%) bins. Finished parsing hits for 50 of 118 (42.37%) bins. Finished parsing hits for 51 of 118 (43.22%) bins. Finished parsing hits for 52 of 118 (44.07%) bins. Finished parsing hits for 53 of 118 (44.92%) bins. Finished parsing hits for 54 of 118 (45.76%) bins. Finished parsing hits for 55 of 118 (46.61%) bins. Finished parsing hits for 56 of 118 (47.46%) bins. Finished parsing hits for 57 of 118 (48.31%) bins. Finished parsing hits for 58 of 118 (49.15%) bins. Finished parsing hits for 59 of 118 (50.00%) bins. Finished parsing hits for 60 of 118 (50.85%) bins. Finished parsing hits for 61 of 118 (51.69%) bins. Finished parsing hits for 62 of 118 (52.54%) bins. Finished parsing hits for 63 of 118 (53.39%) bins. Finished parsing hits for 64 of 118 (54.24%) bins. Finished parsing hits for 65 of 118 (55.08%) bins. Finished parsing hits for 66 of 118 (55.93%) bins. Finished parsing hits for 67 of 118 (56.78%) bins. Finished parsing hits for 68 of 118 (57.63%) bins. Finished parsing hits for 69 of 118 (58.47%) bins. Finished parsing hits for 70 of 118 (59.32%) bins. Finished parsing hits for 71 of 118 (60.17%) bins. Finished parsing hits for 72 of 118 (61.02%) bins. Finished parsing hits for 73 of 118 (61.86%) bins. Finished parsing hits for 74 of 118 (62.71%) bins. Finished parsing hits for 75 of 118 (63.56%) bins. Finished parsing hits for 76 of 118 (64.41%) bins. Finished parsing hits for 77 of 118 (65.25%) bins. Finished parsing hits for 78 of 118 (66.10%) bins. Finished parsing hits for 79 of 118 (66.95%) bins. Finished parsing hits for 80 of 118 (67.80%) bins. Finished parsing hits for 81 of 118 (68.64%) bins. Finished parsing hits for 82 of 118 (69.49%) bins. Finished parsing hits for 83 of 118 (70.34%) bins. Finished parsing hits for 84 of 118 (71.19%) bins. Finished parsing hits for 85 of 118 (72.03%) bins. Finished parsing hits for 86 of 118 (72.88%) bins. Finished parsing hits for 87 of 118 (73.73%) bins. Finished parsing hits for 88 of 118 (74.58%) bins. Finished parsing hits for 89 of 118 (75.42%) bins. Finished parsing hits for 90 of 118 (76.27%) bins. Finished parsing hits for 91 of 118 (77.12%) bins. Finished parsing hits for 92 of 118 (77.97%) bins. Finished parsing hits for 93 of 118 (78.81%) bins. Finished parsing hits for 94 of 118 (79.66%) bins. Finished parsing hits for 95 of 118 (80.51%) bins. Finished parsing hits for 96 of 118 (81.36%) bins. Finished parsing hits for 97 of 118 (82.20%) bins. Finished parsing hits for 98 of 118 (83.05%) bins. Finished parsing hits for 99 of 118 (83.90%) bins. Finished parsing hits for 100 of 118 (84.75%) bins. Finished parsing hits for 101 of 118 (85.59%) bins. Finished parsing hits for 102 of 118 (86.44%) bins. Finished parsing hits for 103 of 118 (87.29%) bins. Finished parsing hits for 104 of 118 (88.14%) bins. Finished parsing hits for 105 of 118 (88.98%) bins. Finished parsing hits for 106 of 118 (89.83%) bins. Finished parsing hits for 107 of 118 (90.68%) bins. Finished parsing hits for 108 of 118 (91.53%) bins. Finished parsing hits for 109 of 118 (92.37%) bins. Finished parsing hits for 110 of 118 (93.22%) bins. Finished parsing hits for 111 of 118 (94.07%) bins. Finished parsing hits for 112 of 118 (94.92%) bins. Finished parsing hits for 113 of 118 (95.76%) bins. Finished parsing hits for 114 of 118 (96.61%) bins. Finished parsing hits for 115 of 118 (97.46%) bins. Finished parsing hits for 116 of 118 (98.31%) bins. Finished parsing hits for 117 of 118 (99.15%) bins. Finished parsing hits for 118 of 118 (100.00%) bins. Determining marker sets for each genome bin. Finished processing 1 of 118 (0.85%) bins (current: bin.1). Finished processing 2 of 118 (1.69%) bins (current: bin.10). Finished processing 3 of 118 (2.54%) bins (current: bin.100). Finished processing 4 of 118 (3.39%) bins (current: bin.101). Finished processing 5 of 118 (4.24%) bins (current: bin.103). Finished processing 6 of 118 (5.08%) bins (current: bin.104). Finished processing 7 of 118 (5.93%) bins (current: bin.102). Finished processing 8 of 118 (6.78%) bins (current: bin.105). Finished processing 9 of 118 (7.63%) bins (current: bin.106). Finished processing 10 of 118 (8.47%) bins (current: bin.107). Finished processing 11 of 118 (9.32%) bins (current: bin.108). Finished processing 12 of 118 (10.17%) bins (current: bin.109). Finished processing 13 of 118 (11.02%) bins (current: bin.11). Finished processing 14 of 118 (11.86%) bins (current: bin.110). Finished processing 15 of 118 (12.71%) bins (current: bin.111). Finished processing 16 of 118 (13.56%) bins (current: bin.112). Finished processing 17 of 118 (14.41%) bins (current: bin.113). Finished processing 18 of 118 (15.25%) bins (current: bin.114). Finished processing 19 of 118 (16.10%) bins (current: bin.115). Finished processing 20 of 118 (16.95%) bins (current: bin.116). Finished processing 21 of 118 (17.80%) bins (current: bin.117). Finished processing 22 of 118 (18.64%) bins (current: bin.118). Finished processing 23 of 118 (19.49%) bins (current: bin.12). Finished processing 24 of 118 (20.34%) bins (current: bin.13). Finished processing 25 of 118 (21.19%) bins (current: bin.14). Finished processing 26 of 118 (22.03%) bins (current: bin.15). Finished processing 27 of 118 (22.88%) bins (current: bin.16). Finished processing 28 of 118 (23.73%) bins (current: bin.17). Finished processing 29 of 118 (24.58%) bins (current: bin.18). Finished processing 30 of 118 (25.42%) bins (current: bin.19). Finished processing 31 of 118 (26.27%) bins (current: bin.2). Finished processing 32 of 118 (27.12%) bins (current: bin.20). Finished processing 33 of 118 (27.97%) bins (current: bin.21). Finished processing 34 of 118 (28.81%) bins (current: bin.22). Finished processing 35 of 118 (29.66%) bins (current: bin.23). Finished processing 36 of 118 (30.51%) bins (current: bin.24). Finished processing 37 of 118 (31.36%) bins (current: bin.25). Finished processing 38 of 118 (32.20%) bins (current: bin.26). Finished processing 39 of 118 (33.05%) bins (current: bin.27). Finished processing 40 of 118 (33.90%) bins (current: bin.28). Finished processing 41 of 118 (34.75%) bins (current: bin.29). Finished processing 42 of 118 (35.59%) bins (current: bin.3). Finished processing 43 of 118 (36.44%) bins (current: bin.30). Finished processing 44 of 118 (37.29%) bins (current: bin.31). Finished processing 45 of 118 (38.14%) bins (current: bin.32). Finished processing 46 of 118 (38.98%) bins (current: bin.33). Finished processing 47 of 118 (39.83%) bins (current: bin.34). Finished processing 48 of 118 (40.68%) bins (current: bin.35). Finished processing 49 of 118 (41.53%) bins (current: bin.36). Finished processing 50 of 118 (42.37%) bins (current: bin.37). Finished processing 51 of 118 (43.22%) bins (current: bin.38). Finished processing 52 of 118 (44.07%) bins (current: bin.39). Finished processing 53 of 118 (44.92%) bins (current: bin.4). Finished processing 54 of 118 (45.76%) bins (current: bin.40). Finished processing 55 of 118 (46.61%) bins (current: bin.41). Finished processing 56 of 118 (47.46%) bins (current: bin.42). Finished processing 57 of 118 (48.31%) bins (current: bin.43). Finished processing 58 of 118 (49.15%) bins (current: bin.44). Finished processing 59 of 118 (50.00%) bins (current: bin.45). Finished processing 60 of 118 (50.85%) bins (current: bin.46). Finished processing 61 of 118 (51.69%) bins (current: bin.47). Finished processing 62 of 118 (52.54%) bins (current: bin.48). Finished processing 63 of 118 (53.39%) bins (current: bin.49). Finished processing 64 of 118 (54.24%) bins (current: bin.5). Finished processing 65 of 118 (55.08%) bins (current: bin.50). Finished processing 66 of 118 (55.93%) bins (current: bin.51). Finished processing 67 of 118 (56.78%) bins (current: bin.52). Finished processing 68 of 118 (57.63%) bins (current: bin.53). Finished processing 69 of 118 (58.47%) bins (current: bin.54). Finished processing 70 of 118 (59.32%) bins (current: bin.55). Finished processing 71 of 118 (60.17%) bins (current: bin.56). Finished processing 72 of 118 (61.02%) bins (current: bin.57). Finished processing 73 of 118 (61.86%) bins (current: bin.58). Finished processing 74 of 118 (62.71%) bins (current: bin.59). Finished processing 75 of 118 (63.56%) bins (current: bin.6). Finished processing 76 of 118 (64.41%) bins (current: bin.60). Finished processing 77 of 118 (65.25%) bins (current: bin.61). Finished processing 78 of 118 (66.10%) bins (current: bin.62). Finished processing 79 of 118 (66.95%) bins (current: bin.63). Finished processing 80 of 118 (67.80%) bins (current: bin.64). Finished processing 81 of 118 (68.64%) bins (current: bin.65). Finished processing 82 of 118 (69.49%) bins (current: bin.66). Finished processing 83 of 118 (70.34%) bins (current: bin.67). Finished processing 84 of 118 (71.19%) bins (current: bin.68). Finished processing 85 of 118 (72.03%) bins (current: bin.69). Finished processing 86 of 118 (72.88%) bins (current: bin.7). Finished processing 87 of 118 (73.73%) bins (current: bin.70). Finished processing 88 of 118 (74.58%) bins (current: bin.71). Finished processing 89 of 118 (75.42%) bins (current: bin.72). Finished processing 90 of 118 (76.27%) bins (current: bin.73). Finished processing 91 of 118 (77.12%) bins (current: bin.74). Finished processing 92 of 118 (77.97%) bins (current: bin.75). Finished processing 93 of 118 (78.81%) bins (current: bin.76). Finished processing 94 of 118 (79.66%) bins (current: bin.77). Finished processing 95 of 118 (80.51%) bins (current: bin.78). Finished processing 96 of 118 (81.36%) bins (current: bin.79). Finished processing 97 of 118 (82.20%) bins (current: bin.8). Finished processing 98 of 118 (83.05%) bins (current: bin.80). Finished processing 99 of 118 (83.90%) bins (current: bin.81). Finished processing 100 of 118 (84.75%) bins (current: bin.82). Finished processing 101 of 118 (85.59%) bins (current: bin.83). Finished processing 102 of 118 (86.44%) bins (current: bin.84). Finished processing 103 of 118 (87.29%) bins (current: bin.85). Finished processing 104 of 118 (88.14%) bins (current: bin.86). Finished processing 105 of 118 (88.98%) bins (current: bin.87). Finished processing 106 of 118 (89.83%) bins (current: bin.88). Finished processing 107 of 118 (90.68%) bins (current: bin.89). Finished processing 108 of 118 (91.53%) bins (current: bin.9). Finished processing 109 of 118 (92.37%) bins (current: bin.90). Finished processing 110 of 118 (93.22%) bins (current: bin.91). Finished processing 111 of 118 (94.07%) bins (current: bin.92). Finished processing 112 of 118 (94.92%) bins (current: bin.93). Finished processing 113 of 118 (95.76%) bins (current: bin.94). Finished processing 114 of 118 (96.61%) bins (current: bin.95). Finished processing 115 of 118 (97.46%) bins (current: bin.96). Finished processing 116 of 118 (98.31%) bins (current: bin.97). Finished processing 117 of 118 (99.15%) bins (current: bin.98). Finished processing 118 of 118 (100.00%) bins (current: bin.99). Marker set written to: /home-fn/users/nsfn114_WH/qlp/checkM/checkm5_2/lineage.ms { Current stage: 0:00:45.860 || Total: 0:20:04.001 } ******************************************************************************* [CheckM - analyze] Identifying marker genes in bins. ******************************************************************************* Identifying marker genes in 118 bins with 10 threads: Finished processing 0 of 118 (0.00%) bins. Finished processing 1 of 118 (0.85%) bins. Finished processing 2 of 118 (1.69%) bins. Finished processing 3 of 118 (2.54%) bins. Finished processing 4 of 118 (3.39%) bins. Finished processing 5 of 118 (4.24%) bins. Finished processing 6 of 118 (5.08%) bins. Finished processing 7 of 118 (5.93%) bins. Finished processing 8 of 118 (6.78%) bins. Finished processing 9 of 118 (7.63%) bins. Finished processing 10 of 118 (8.47%) bins. Finished processing 11 of 118 (9.32%) bins. Finished processing 12 of 118 (10.17%) bins. Finished processing 13 of 118 (11.02%) bins. Finished processing 14 of 118 (11.86%) bins. Finished processing 15 of 118 (12.71%) bins. Finished processing 16 of 118 (13.56%) bins. Finished processing 17 of 118 (14.41%) bins. Finished processing 18 of 118 (15.25%) bins. Finished processing 19 of 118 (16.10%) bins. Finished processing 20 of 118 (16.95%) bins. Finished processing 21 of 118 (17.80%) bins. Finished processing 22 of 118 (18.64%) bins. Finished processing 23 of 118 (19.49%) bins. Finished processing 24 of 118 (20.34%) bins. Finished processing 25 of 118 (21.19%) bins. Finished processing 26 of 118 (22.03%) bins. Finished processing 27 of 118 (22.88%) bins. Finished processing 28 of 118 (23.73%) bins. Finished processing 29 of 118 (24.58%) bins. Finished processing 30 of 118 (25.42%) bins. Finished processing 31 of 118 (26.27%) bins. Finished processing 32 of 118 (27.12%) bins. Finished processing 33 of 118 (27.97%) bins. Finished processing 34 of 118 (28.81%) bins. Finished processing 35 of 118 (29.66%) bins. Finished processing 36 of 118 (30.51%) bins. Finished processing 37 of 118 (31.36%) bins. Finished processing 38 of 118 (32.20%) bins. Finished processing 39 of 118 (33.05%) bins. Finished processing 40 of 118 (33.90%) bins. Finished processing 41 of 118 (34.75%) bins. Finished processing 42 of 118 (35.59%) bins. Finished processing 43 of 118 (36.44%) bins. Finished processing 44 of 118 (37.29%) bins. Finished processing 45 of 118 (38.14%) bins. Finished processing 46 of 118 (38.98%) bins. Finished processing 47 of 118 (39.83%) bins. Finished processing 48 of 118 (40.68%) bins. Finished processing 49 of 118 (41.53%) bins. Finished processing 50 of 118 (42.37%) bins. Finished processing 51 of 118 (43.22%) bins. Finished processing 52 of 118 (44.07%) bins. Finished processing 53 of 118 (44.92%) bins. Finished processing 54 of 118 (45.76%) bins. Finished processing 55 of 118 (46.61%) bins. Finished processing 56 of 118 (47.46%) bins. Finished processing 57 of 118 (48.31%) bins. Finished processing 58 of 118 (49.15%) bins. Finished processing 59 of 118 (50.00%) bins. Finished processing 60 of 118 (50.85%) bins. Finished processing 61 of 118 (51.69%) bins. Finished processing 62 of 118 (52.54%) bins. Finished processing 63 of 118 (53.39%) bins. Finished processing 64 of 118 (54.24%) bins. Finished processing 65 of 118 (55.08%) bins. Finished processing 66 of 118 (55.93%) bins. Finished processing 67 of 118 (56.78%) bins. Finished processing 68 of 118 (57.63%) bins. Finished processing 69 of 118 (58.47%) bins. Finished processing 70 of 118 (59.32%) bins. Finished processing 71 of 118 (60.17%) bins. Finished processing 72 of 118 (61.02%) bins. Finished processing 73 of 118 (61.86%) bins. Finished processing 74 of 118 (62.71%) bins. Finished processing 75 of 118 (63.56%) bins. Finished processing 76 of 118 (64.41%) bins. Finished processing 77 of 118 (65.25%) bins. Finished processing 78 of 118 (66.10%) bins. Finished processing 79 of 118 (66.95%) bins. Finished processing 80 of 118 (67.80%) bins. Finished processing 81 of 118 (68.64%) bins. Finished processing 82 of 118 (69.49%) bins. Finished processing 83 of 118 (70.34%) bins. Finished processing 84 of 118 (71.19%) bins. Finished processing 85 of 118 (72.03%) bins. Finished processing 86 of 118 (72.88%) bins. Finished processing 87 of 118 (73.73%) bins. Finished processing 88 of 118 (74.58%) bins. Finished processing 89 of 118 (75.42%) bins. Finished processing 90 of 118 (76.27%) bins. Finished processing 91 of 118 (77.12%) bins. Finished processing 92 of 118 (77.97%) bins. Finished processing 93 of 118 (78.81%) bins. Finished processing 94 of 118 (79.66%) bins. Finished processing 95 of 118 (80.51%) bins. Finished processing 96 of 118 (81.36%) bins. Finished processing 97 of 118 (82.20%) bins. Finished processing 98 of 118 (83.05%) bins. Finished processing 99 of 118 (83.90%) bins. Finished processing 100 of 118 (84.75%) bins. Finished processing 101 of 118 (85.59%) bins. Finished processing 102 of 118 (86.44%) bins. Finished processing 103 of 118 (87.29%) bins. Finished processing 104 of 118 (88.14%) bins. Finished processing 105 of 118 (88.98%) bins. Finished processing 106 of 118 (89.83%) bins. Finished processing 107 of 118 (90.68%) bins. Finished processing 108 of 118 (91.53%) bins. Finished processing 109 of 118 (92.37%) bins. Finished processing 110 of 118 (93.22%) bins. Finished processing 111 of 118 (94.07%) bins. Finished processing 112 of 118 (94.92%) bins. Finished processing 113 of 118 (95.76%) bins. Finished processing 114 of 118 (96.61%) bins. Finished processing 115 of 118 (97.46%) bins. Finished processing 116 of 118 (98.31%) bins. Finished processing 117 of 118 (99.15%) bins. Finished processing 118 of 118 (100.00%) bins. Saving HMM info to file. { Current stage: 0:16:42.987 || Total: 0:36:46.989 } Parsing HMM hits to marker genes: Finished parsing hits for 1 of 118 (0.85%) bins. Finished parsing hits for 2 of 118 (1.69%) bins. Finished parsing hits for 3 of 118 (2.54%) bins. Finished parsing hits for 4 of 118 (3.39%) bins. Finished parsing hits for 5 of 118 (4.24%) bins. Finished parsing hits for 6 of 118 (5.08%) bins. Finished parsing hits for 7 of 118 (5.93%) bins. Finished parsing hits for 8 of 118 (6.78%) bins. Finished parsing hits for 9 of 118 (7.63%) bins. Finished parsing hits for 10 of 118 (8.47%) bins. Finished parsing hits for 11 of 118 (9.32%) bins. Finished parsing hits for 12 of 118 (10.17%) bins. Finished parsing hits for 13 of 118 (11.02%) bins. Finished parsing hits for 14 of 118 (11.86%) bins. Finished parsing hits for 15 of 118 (12.71%) bins. Finished parsing hits for 16 of 118 (13.56%) bins. Finished parsing hits for 17 of 118 (14.41%) bins. Finished parsing hits for 18 of 118 (15.25%) bins. Finished parsing hits for 19 of 118 (16.10%) bins. Finished parsing hits for 20 of 118 (16.95%) bins. Finished parsing hits for 21 of 118 (17.80%) bins. Finished parsing hits for 22 of 118 (18.64%) bins. Finished parsing hits for 23 of 118 (19.49%) bins. Finished parsing hits for 24 of 118 (20.34%) bins. Finished parsing hits for 25 of 118 (21.19%) bins. Finished parsing hits for 26 of 118 (22.03%) bins. Finished parsing hits for 27 of 118 (22.88%) bins. Finished parsing hits for 28 of 118 (23.73%) bins. Finished parsing hits for 29 of 118 (24.58%) bins. Finished parsing hits for 30 of 118 (25.42%) bins. Finished parsing hits for 31 of 118 (26.27%) bins. Finished parsing hits for 32 of 118 (27.12%) bins. Finished parsing hits for 33 of 118 (27.97%) bins. Finished parsing hits for 34 of 118 (28.81%) bins. Finished parsing hits for 35 of 118 (29.66%) bins. Finished parsing hits for 36 of 118 (30.51%) bins. Finished parsing hits for 37 of 118 (31.36%) bins. Finished parsing hits for 38 of 118 (32.20%) bins. Finished parsing hits for 39 of 118 (33.05%) bins. Finished parsing hits for 40 of 118 (33.90%) bins. Finished parsing hits for 41 of 118 (34.75%) bins. Finished parsing hits for 42 of 118 (35.59%) bins. Finished parsing hits for 43 of 118 (36.44%) bins. Finished parsing hits for 44 of 118 (37.29%) bins. Finished parsing hits for 45 of 118 (38.14%) bins. Finished parsing hits for 46 of 118 (38.98%) bins. Finished parsing hits for 47 of 118 (39.83%) bins. Finished parsing hits for 48 of 118 (40.68%) bins. Finished parsing hits for 49 of 118 (41.53%) bins. Finished parsing hits for 50 of 118 (42.37%) bins. Finished parsing hits for 51 of 118 (43.22%) bins. Finished parsing hits for 52 of 118 (44.07%) bins. Finished parsing hits for 53 of 118 (44.92%) bins. Finished parsing hits for 54 of 118 (45.76%) bins. Finished parsing hits for 55 of 118 (46.61%) bins. Finished parsing hits for 56 of 118 (47.46%) bins. Finished parsing hits for 57 of 118 (48.31%) bins. Finished parsing hits for 58 of 118 (49.15%) bins. Finished parsing hits for 59 of 118 (50.00%) bins. Finished parsing hits for 60 of 118 (50.85%) bins. Finished parsing hits for 61 of 118 (51.69%) bins. Finished parsing hits for 62 of 118 (52.54%) bins. Finished parsing hits for 63 of 118 (53.39%) bins. Finished parsing hits for 64 of 118 (54.24%) bins. Finished parsing hits for 65 of 118 (55.08%) bins. Finished parsing hits for 66 of 118 (55.93%) bins. Finished parsing hits for 67 of 118 (56.78%) bins. Finished parsing hits for 68 of 118 (57.63%) bins. Finished parsing hits for 69 of 118 (58.47%) bins. Finished parsing hits for 70 of 118 (59.32%) bins. Finished parsing hits for 71 of 118 (60.17%) bins. Finished parsing hits for 72 of 118 (61.02%) bins. Finished parsing hits for 73 of 118 (61.86%) bins. Finished parsing hits for 74 of 118 (62.71%) bins. Finished parsing hits for 75 of 118 (63.56%) bins. Finished parsing hits for 76 of 118 (64.41%) bins. Finished parsing hits for 77 of 118 (65.25%) bins. Finished parsing hits for 78 of 118 (66.10%) bins. Finished parsing hits for 79 of 118 (66.95%) bins. Finished parsing hits for 80 of 118 (67.80%) bins. Finished parsing hits for 81 of 118 (68.64%) bins. Finished parsing hits for 82 of 118 (69.49%) bins. Finished parsing hits for 83 of 118 (70.34%) bins. Finished parsing hits for 84 of 118 (71.19%) bins. Finished parsing hits for 85 of 118 (72.03%) bins. Finished parsing hits for 86 of 118 (72.88%) bins. Finished parsing hits for 87 of 118 (73.73%) bins. Finished parsing hits for 88 of 118 (74.58%) bins. Finished parsing hits for 89 of 118 (75.42%) bins. Finished parsing hits for 90 of 118 (76.27%) bins. Finished parsing hits for 91 of 118 (77.12%) bins. Finished parsing hits for 92 of 118 (77.97%) bins. Finished parsing hits for 93 of 118 (78.81%) bins. Finished parsing hits for 94 of 118 (79.66%) bins. Finished parsing hits for 95 of 118 (80.51%) bins. Finished parsing hits for 96 of 118 (81.36%) bins. Finished parsing hits for 97 of 118 (82.20%) bins. Finished parsing hits for 98 of 118 (83.05%) bins. Finished parsing hits for 99 of 118 (83.90%) bins. Finished parsing hits for 100 of 118 (84.75%) bins. Finished parsing hits for 101 of 118 (85.59%) bins. Finished parsing hits for 102 of 118 (86.44%) bins. Finished parsing hits for 103 of 118 (87.29%) bins. Finished parsing hits for 104 of 118 (88.14%) bins. Finished parsing hits for 105 of 118 (88.98%) bins. Finished parsing hits for 106 of 118 (89.83%) bins. Finished parsing hits for 107 of 118 (90.68%) bins. Finished parsing hits for 108 of 118 (91.53%) bins. Finished parsing hits for 109 of 118 (92.37%) bins. Finished parsing hits for 110 of 118 (93.22%) bins. Finished parsing hits for 111 of 118 (94.07%) bins. Finished parsing hits for 112 of 118 (94.92%) bins. Finished parsing hits for 113 of 118 (95.76%) bins. Finished parsing hits for 114 of 118 (96.61%) bins. Finished parsing hits for 115 of 118 (97.46%) bins. Finished parsing hits for 116 of 118 (98.31%) bins. Finished parsing hits for 117 of 118 (99.15%) bins. Finished parsing hits for 118 of 118 (100.00%) bins. Aligning marker genes with multiple hits in a single bin: Finished processing 0 of 118 (0.00%) bins. Finished processing 1 of 118 (0.85%) bins. Finished processing 2 of 118 (1.69%) bins. Finished processing 3 of 118 (2.54%) bins. Finished processing 4 of 118 (3.39%) bins. Finished processing 5 of 118 (4.24%) bins. Finished processing 6 of 118 (5.08%) bins. Finished processing 7 of 118 (5.93%) bins. Finished processing 8 of 118 (6.78%) bins. Finished processing 9 of 118 (7.63%) bins. Finished processing 10 of 118 (8.47%) bins. Finished processing 11 of 118 (9.32%) bins. Finished processing 12 of 118 (10.17%) bins. Finished processing 13 of 118 (11.02%) bins. Finished processing 14 of 118 (11.86%) bins. Finished processing 15 of 118 (12.71%) bins. Finished processing 16 of 118 (13.56%) bins. Finished processing 17 of 118 (14.41%) bins. Finished processing 18 of 118 (15.25%) bins. Finished processing 19 of 118 (16.10%) bins. Finished processing 20 of 118 (16.95%) bins. Finished processing 21 of 118 (17.80%) bins. Finished processing 22 of 118 (18.64%) bins. Finished processing 23 of 118 (19.49%) bins. Finished processing 24 of 118 (20.34%) bins. Finished processing 25 of 118 (21.19%) bins. Finished processing 26 of 118 (22.03%) bins. Finished processing 27 of 118 (22.88%) bins. Finished processing 28 of 118 (23.73%) bins. Finished processing 29 of 118 (24.58%) bins. Finished processing 30 of 118 (25.42%) bins. Finished processing 31 of 118 (26.27%) bins. Finished processing 32 of 118 (27.12%) bins. Finished processing 33 of 118 (27.97%) bins. Finished processing 34 of 118 (28.81%) bins. Finished processing 35 of 118 (29.66%) bins. Finished processing 36 of 118 (30.51%) bins. Finished processing 37 of 118 (31.36%) bins. Finished processing 38 of 118 (32.20%) bins. Finished processing 39 of 118 (33.05%) bins. Finished processing 40 of 118 (33.90%) bins. Finished processing 41 of 118 (34.75%) bins. Finished processing 42 of 118 (35.59%) bins. Finished processing 43 of 118 (36.44%) bins. Finished processing 44 of 118 (37.29%) bins. Finished processing 45 of 118 (38.14%) bins. Finished processing 46 of 118 (38.98%) bins. Finished processing 47 of 118 (39.83%) bins. Finished processing 48 of 118 (40.68%) bins. Finished processing 49 of 118 (41.53%) bins. Finished processing 50 of 118 (42.37%) bins. Finished processing 51 of 118 (43.22%) bins. Finished processing 52 of 118 (44.07%) bins. Finished processing 53 of 118 (44.92%) bins. Finished processing 54 of 118 (45.76%) bins. Finished processing 55 of 118 (46.61%) bins. Finished processing 56 of 118 (47.46%) bins. Finished processing 57 of 118 (48.31%) bins. Finished processing 58 of 118 (49.15%) bins. Finished processing 59 of 118 (50.00%) bins. Finished processing 60 of 118 (50.85%) bins. Finished processing 61 of 118 (51.69%) bins. Finished processing 62 of 118 (52.54%) bins. Finished processing 63 of 118 (53.39%) bins. Finished processing 64 of 118 (54.24%) bins. Finished processing 65 of 118 (55.08%) bins. Finished processing 66 of 118 (55.93%) bins. Finished processing 67 of 118 (56.78%) bins. Finished processing 68 of 118 (57.63%) bins. Finished processing 69 of 118 (58.47%) bins. Finished processing 70 of 118 (59.32%) bins. Finished processing 71 of 118 (60.17%) bins. Finished processing 72 of 118 (61.02%) bins. Finished processing 73 of 118 (61.86%) bins. Finished processing 74 of 118 (62.71%) bins. Finished processing 75 of 118 (63.56%) bins. Finished processing 76 of 118 (64.41%) bins. Finished processing 77 of 118 (65.25%) bins. Finished processing 78 of 118 (66.10%) bins. Finished processing 79 of 118 (66.95%) bins. Finished processing 80 of 118 (67.80%) bins. Finished processing 81 of 118 (68.64%) bins. Finished processing 82 of 118 (69.49%) bins. Finished processing 83 of 118 (70.34%) bins. Finished processing 84 of 118 (71.19%) bins. Finished processing 85 of 118 (72.03%) bins. Finished processing 86 of 118 (72.88%) bins. Finished processing 87 of 118 (73.73%) bins. Finished processing 88 of 118 (74.58%) bins. Finished processing 89 of 118 (75.42%) bins. Finished processing 90 of 118 (76.27%) bins. Finished processing 91 of 118 (77.12%) bins. Finished processing 92 of 118 (77.97%) bins. Finished processing 93 of 118 (78.81%) bins. Finished processing 94 of 118 (79.66%) bins. Finished processing 95 of 118 (80.51%) bins. Finished processing 96 of 118 (81.36%) bins. Finished processing 97 of 118 (82.20%) bins. Finished processing 98 of 118 (83.05%) bins. Finished processing 99 of 118 (83.90%) bins. Finished processing 100 of 118 (84.75%) bins. Finished processing 101 of 118 (85.59%) bins. Finished processing 102 of 118 (86.44%) bins. Finished processing 103 of 118 (87.29%) bins. Finished processing 104 of 118 (88.14%) bins. Finished processing 105 of 118 (88.98%) bins. Finished processing 106 of 118 (89.83%) bins. Finished processing 107 of 118 (90.68%) bins. Finished processing 108 of 118 (91.53%) bins. Finished processing 109 of 118 (92.37%) bins. Finished processing 110 of 118 (93.22%) bins. Finished processing 111 of 118 (94.07%) bins. Finished processing 112 of 118 (94.92%) bins. Finished processing 113 of 118 (95.76%) bins. Finished processing 114 of 118 (96.61%) bins. Finished processing 115 of 118 (97.46%) bins. Finished processing 116 of 118 (98.31%) bins. Finished processing 117 of 118 (99.15%) bins. Finished processing 118 of 118 (100.00%) bins. { Current stage: 0:02:47.051 || Total: 0:39:34.040 } Calculating genome statistics for 118 bins with 10 threads: Finished processing 0 of 118 (0.00%) bins. Finished processing 1 of 118 (0.85%) bins. Finished processing 2 of 118 (1.69%) bins. Finished processing 3 of 118 (2.54%) bins. Finished processing 4 of 118 (3.39%) bins. 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Finished processing 93 of 118 (78.81%) bins. Finished processing 94 of 118 (79.66%) bins. Finished processing 95 of 118 (80.51%) bins. Finished processing 96 of 118 (81.36%) bins. Finished processing 97 of 118 (82.20%) bins. Finished processing 98 of 118 (83.05%) bins. Finished processing 99 of 118 (83.90%) bins. Finished processing 100 of 118 (84.75%) bins. Finished processing 101 of 118 (85.59%) bins. Finished processing 102 of 118 (86.44%) bins. Finished processing 103 of 118 (87.29%) bins. Finished processing 104 of 118 (88.14%) bins. Finished processing 105 of 118 (88.98%) bins. Finished processing 106 of 118 (89.83%) bins. Finished processing 107 of 118 (90.68%) bins. Finished processing 108 of 118 (91.53%) bins. Finished processing 109 of 118 (92.37%) bins. Finished processing 110 of 118 (93.22%) bins. Finished processing 111 of 118 (94.07%) bins. Finished processing 112 of 118 (94.92%) bins. Finished processing 113 of 118 (95.76%) bins. Finished processing 114 of 118 (96.61%) bins. Finished processing 115 of 118 (97.46%) bins. Finished processing 116 of 118 (98.31%) bins. Finished processing 117 of 118 (99.15%) bins. Finished processing 118 of 118 (100.00%) bins. { Current stage: 0:00:08.074 || Total: 0:39:42.115 } ******************************************************************************* [CheckM - qa] Tabulating genome statistics. ******************************************************************************* Calculating AAI between multi-copy marker genes. Reading HMM info from file. Parsing HMM hits to marker genes: Finished parsing hits for 1 of 118 (0.85%) bins. Finished parsing hits for 2 of 118 (1.69%) bins. Finished parsing hits for 3 of 118 (2.54%) bins. Finished parsing hits for 4 of 118 (3.39%) bins. Finished parsing hits for 5 of 118 (4.24%) bins. Finished parsing hits for 6 of 118 (5.08%) bins. Finished parsing hits for 7 of 118 (5.93%) bins. Finished parsing hits for 8 of 118 (6.78%) bins. Finished parsing hits for 9 of 118 (7.63%) bins. Finished parsing hits for 10 of 118 (8.47%) bins. Finished parsing hits for 11 of 118 (9.32%) bins. Finished parsing hits for 12 of 118 (10.17%) bins. Finished parsing hits for 13 of 118 (11.02%) bins. Finished parsing hits for 14 of 118 (11.86%) bins. Finished parsing hits for 15 of 118 (12.71%) bins. Finished parsing hits for 16 of 118 (13.56%) bins. Finished parsing hits for 17 of 118 (14.41%) bins. Finished parsing hits for 18 of 118 (15.25%) bins. Finished parsing hits for 19 of 118 (16.10%) bins. Finished parsing hits for 20 of 118 (16.95%) bins. Finished parsing hits for 21 of 118 (17.80%) bins. Finished parsing hits for 22 of 118 (18.64%) bins. Finished parsing hits for 23 of 118 (19.49%) bins. Finished parsing hits for 24 of 118 (20.34%) bins. Finished parsing hits for 25 of 118 (21.19%) bins. Finished parsing hits for 26 of 118 (22.03%) bins. Finished parsing hits for 27 of 118 (22.88%) bins. Finished parsing hits for 28 of 118 (23.73%) bins. Finished parsing hits for 29 of 118 (24.58%) bins. Finished parsing hits for 30 of 118 (25.42%) bins. Finished parsing hits for 31 of 118 (26.27%) bins. Finished parsing hits for 32 of 118 (27.12%) bins. Finished parsing hits for 33 of 118 (27.97%) bins. Finished parsing hits for 34 of 118 (28.81%) bins. Finished parsing hits for 35 of 118 (29.66%) bins. Finished parsing hits for 36 of 118 (30.51%) bins. Finished parsing hits for 37 of 118 (31.36%) bins. Finished parsing hits for 38 of 118 (32.20%) bins. Finished parsing hits for 39 of 118 (33.05%) bins. Finished parsing hits for 40 of 118 (33.90%) bins. Finished parsing hits for 41 of 118 (34.75%) bins. Finished parsing hits for 42 of 118 (35.59%) bins. Finished parsing hits for 43 of 118 (36.44%) bins. Finished parsing hits for 44 of 118 (37.29%) bins. Finished parsing hits for 45 of 118 (38.14%) bins. Finished parsing hits for 46 of 118 (38.98%) bins. Finished parsing hits for 47 of 118 (39.83%) bins. Finished parsing hits for 48 of 118 (40.68%) bins. Finished parsing hits for 49 of 118 (41.53%) bins. Finished parsing hits for 50 of 118 (42.37%) bins. Finished parsing hits for 51 of 118 (43.22%) bins. Finished parsing hits for 52 of 118 (44.07%) bins. Finished parsing hits for 53 of 118 (44.92%) bins. Finished parsing hits for 54 of 118 (45.76%) bins. Finished parsing hits for 55 of 118 (46.61%) bins. Finished parsing hits for 56 of 118 (47.46%) bins. Finished parsing hits for 57 of 118 (48.31%) bins. Finished parsing hits for 58 of 118 (49.15%) bins. Finished parsing hits for 59 of 118 (50.00%) bins. Finished parsing hits for 60 of 118 (50.85%) bins. Finished parsing hits for 61 of 118 (51.69%) bins. Finished parsing hits for 62 of 118 (52.54%) bins. Finished parsing hits for 63 of 118 (53.39%) bins. Finished parsing hits for 64 of 118 (54.24%) bins. Finished parsing hits for 65 of 118 (55.08%) bins. Finished parsing hits for 66 of 118 (55.93%) bins. Finished parsing hits for 67 of 118 (56.78%) bins. Finished parsing hits for 68 of 118 (57.63%) bins. Finished parsing hits for 69 of 118 (58.47%) bins. Finished parsing hits for 70 of 118 (59.32%) bins. Finished parsing hits for 71 of 118 (60.17%) bins. Finished parsing hits for 72 of 118 (61.02%) bins. Finished parsing hits for 73 of 118 (61.86%) bins. Finished parsing hits for 74 of 118 (62.71%) bins. Finished parsing hits for 75 of 118 (63.56%) bins. Finished parsing hits for 76 of 118 (64.41%) bins. Finished parsing hits for 77 of 118 (65.25%) bins. Finished parsing hits for 78 of 118 (66.10%) bins. Finished parsing hits for 79 of 118 (66.95%) bins. Finished parsing hits for 80 of 118 (67.80%) bins. Finished parsing hits for 81 of 118 (68.64%) bins. Finished parsing hits for 82 of 118 (69.49%) bins. Finished parsing hits for 83 of 118 (70.34%) bins. Finished parsing hits for 84 of 118 (71.19%) bins. Finished parsing hits for 85 of 118 (72.03%) bins. Finished parsing hits for 86 of 118 (72.88%) bins. Finished parsing hits for 87 of 118 (73.73%) bins. Finished parsing hits for 88 of 118 (74.58%) bins. Finished parsing hits for 89 of 118 (75.42%) bins. Finished parsing hits for 90 of 118 (76.27%) bins. Finished parsing hits for 91 of 118 (77.12%) bins. Finished parsing hits for 92 of 118 (77.97%) bins. Finished parsing hits for 93 of 118 (78.81%) bins. Finished parsing hits for 94 of 118 (79.66%) bins. Finished parsing hits for 95 of 118 (80.51%) bins. Finished parsing hits for 96 of 118 (81.36%) bins. Finished parsing hits for 97 of 118 (82.20%) bins. Finished parsing hits for 98 of 118 (83.05%) bins. Finished parsing hits for 99 of 118 (83.90%) bins. Finished parsing hits for 100 of 118 (84.75%) bins. Finished parsing hits for 101 of 118 (85.59%) bins. Finished parsing hits for 102 of 118 (86.44%) bins. Finished parsing hits for 103 of 118 (87.29%) bins. Finished parsing hits for 104 of 118 (88.14%) bins. Finished parsing hits for 105 of 118 (88.98%) bins. Finished parsing hits for 106 of 118 (89.83%) bins. Finished parsing hits for 107 of 118 (90.68%) bins. Finished parsing hits for 108 of 118 (91.53%) bins. Finished parsing hits for 109 of 118 (92.37%) bins. Finished parsing hits for 110 of 118 (93.22%) bins. Finished parsing hits for 111 of 118 (94.07%) bins. Finished parsing hits for 112 of 118 (94.92%) bins. Finished parsing hits for 113 of 118 (95.76%) bins. Finished parsing hits for 114 of 118 (96.61%) bins. Finished parsing hits for 115 of 118 (97.46%) bins. Finished parsing hits for 116 of 118 (98.31%) bins. Finished parsing hits for 117 of 118 (99.15%) bins. Finished parsing hits for 118 of 118 (100.00%) bins. ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Bin Id Marker lineage # genomes # markers # marker sets 0 1 2 3 4 5+ Completeness Contamination Strain heterogeneity ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- bin.92 root (UID1) 5656 56 24 0 0 0 0 0 56 100.00 2256.11 5.67 bin.81 o__Sphingomonadales (UID3310) 26 569 293 5 563 1 0 0 0 99.16 0.02 0.00 bin.89 c__Alphaproteobacteria (UID3305) 564 347 229 3 323 20 1 0 0 99.13 5.88 43.48 bin.65 o__Burkholderiales (UID4000) 193 427 214 4 420 3 0 0 0 98.44 0.34 0.00 bin.114 k__Bacteria (UID203) 5449 104 58 1 23 29 44 7 0 98.28 160.95 63.55 bin.96 k__Bacteria (UID2566) 525 208 136 3 202 2 1 0 0 97.79 2.94 0.00 bin.35 o__Sphingomonadales (UID3310) 26 569 293 11 547 11 0 0 0 97.54 2.10 18.18 bin.60 c__Alphaproteobacteria (UID3305) 564 349 230 23 325 1 0 0 0 96.89 0.43 0.00 bin.87 c__Gammaproteobacteria (UID4443) 356 451 270 16 429 6 0 0 0 94.69 0.90 50.00 bin.90 k__Bacteria (UID2566) 525 208 136 12 193 3 0 0 0 93.38 1.50 33.33 bin.46 c__Gammaproteobacteria (UID4443) 356 451 270 24 416 11 0 0 0 93.23 2.95 27.27 bin.9 k__Bacteria (UID1453) 901 171 117 10 158 3 0 0 0 93.16 2.56 0.00 bin.109 k__Bacteria (UID2569) 434 278 186 22 252 4 0 0 0 92.71 1.16 50.00 bin.95 f__Rhodobacteraceae (UID3340) 84 568 330 50 492 25 1 0 0 92.46 5.20 25.00 bin.108 s__algicola (UID2846) 47 571 303 33 529 9 0 0 0 91.89 1.71 44.44 bin.24 c__Gammaproteobacteria (UID4443) 356 451 270 44 403 4 0 0 0 91.66 0.60 75.00 bin.45 c__Gammaproteobacteria (UID4443) 356 451 270 48 398 5 0 0 0 91.48 1.60 80.00 bin.99 k__Bacteria (UID203) 5449 104 58 12 41 37 11 3 0 91.30 83.39 51.14 bin.32 c__Gammaproteobacteria (UID4274) 112 581 290 84 487 10 0 0 0 91.29 2.10 0.00 bin.20 c__Gammaproteobacteria (UID4443) 356 451 270 61 380 10 0 0 0 89.80 2.10 50.00 bin.94 k__Bacteria (UID1453) 901 171 117 14 150 6 1 0 0 89.74 5.22 22.22 bin.43 c__Alphaproteobacteria (UID3305) 564 349 230 40 282 26 1 0 0 88.96 5.99 10.34 bin.102 o__Burkholderiales (UID4000) 193 427 214 50 354 22 1 0 0 88.95 5.83 40.00 bin.112 s__algicola (UID2846) 47 571 303 51 510 10 0 0 0 88.53 1.87 80.00 bin.14 p__Proteobacteria (UID3880) 1495 261 164 42 141 67 11 0 0 88.51 43.09 13.00 bin.68 f__Rhodobacteraceae (UID3340) 84 568 330 64 476 28 0 0 0 88.20 3.59 25.00 bin.58 f__Flavobacteriaceae (UID2817) 81 511 283 46 445 20 0 0 0 87.75 2.32 50.00 bin.86 s__algicola (UID2846) 47 571 303 48 520 3 0 0 0 87.68 0.73 0.00 bin.106 o__Actinomycetales (UID1593) 69 400 198 53 343 4 0 0 0 86.61 1.77 75.00 bin.84 o__Actinomycetales (UID1696) 455 315 190 38 266 10 1 0 0 86.46 5.22 69.23 bin.113 c__Betaproteobacteria (UID3971) 223 425 211 91 322 12 0 0 0 85.08 1.96 8.33 bin.98 f__Flavobacteriaceae (UID2817) 81 511 283 69 429 12 1 0 0 84.34 2.69 13.33 bin.73 k__Bacteria (UID203) 5449 104 58 43 9 23 19 6 4 82.35 142.24 37.89 bin.13 o__Burkholderiales (UID4000) 193 427 214 77 318 31 1 0 0 82.07 6.57 35.29 bin.56 c__Alphaproteobacteria (UID3305) 564 347 229 89 252 6 0 0 0 81.75 2.18 83.33 bin.111 k__Bacteria (UID1453) 901 171 117 34 131 5 1 0 0 80.30 5.13 75.00 bin.31 c__Gammaproteobacteria (UID4787) 26 752 296 177 526 48 1 0 0 80.20 8.28 74.51 bin.69 s__algicola (UID2846) 47 571 303 128 412 29 2 0 0 77.91 6.17 20.00 bin.104 c__Alphaproteobacteria (UID3305) 564 347 229 102 221 22 2 0 0 76.26 8.21 71.43 bin.7 o__Burkholderiales (UID4000) 193 427 214 97 316 14 0 0 0 75.60 4.25 50.00 bin.3 k__Bacteria (UID2495) 2993 139 83 33 60 23 15 6 2 75.52 69.91 9.30 bin.85 k__Bacteria (UID203) 5449 103 58 50 35 14 4 0 0 75.43 35.78 50.00 bin.41 o__Actinomycetales (UID1696) 455 315 190 88 223 4 0 0 0 74.60 2.11 0.00 bin.117 k__Bacteria (UID203) 5449 104 58 53 39 12 0 0 0 73.62 15.52 100.00 bin.4 k__Bacteria (UID203) 5449 104 58 51 19 29 4 1 0 73.35 50.08 74.47 bin.49 o__Actinomycetales (UID1572) 580 286 171 83 119 77 7 0 0 73.34 32.75 24.49 bin.33 k__Bacteria (UID203) 5449 104 58 54 39 10 1 0 0 72.76 16.72 76.92 bin.100 k__Bacteria (UID203) 5449 104 58 52 52 0 0 0 0 72.59 0.00 0.00 bin.62 o__Actinomycetales (UID1696) 455 315 190 73 239 3 0 0 0 71.72 0.84 100.00 bin.54 k__Bacteria (UID203) 5449 104 58 55 26 16 7 0 0 71.19 45.17 89.19 bin.93 c__Gammaproteobacteria (UID4201) 1164 275 174 70 117 54 26 8 0 70.45 46.96 6.67 bin.107 c__Gammaproteobacteria (UID4443) 356 451 270 112 227 106 6 0 0 68.34 28.95 4.84 bin.37 o__Burkholderiales (UID4001) 108 570 250 198 344 27 1 0 0 67.60 7.02 46.67 bin.76 o__Actinomycetales (UID1696) 455 315 190 121 187 7 0 0 0 66.05 2.72 85.71 bin.40 k__Bacteria (UID1453) 901 171 117 65 103 3 0 0 0 65.90 2.56 33.33 bin.53 k__Bacteria (UID203) 5449 104 58 51 52 1 0 0 0 65.83 1.72 0.00 bin.101 k__Bacteria (UID203) 5449 104 58 20 24 40 17 3 0 65.52 49.76 55.96 bin.97 k__Bacteria (UID203) 5449 104 58 38 29 37 0 0 0 62.36 36.18 94.59 bin.10 k__Bacteria (UID203) 5449 103 57 55 38 10 0 0 0 61.55 8.77 20.00 bin.21 k__Bacteria (UID203) 5449 104 58 60 44 0 0 0 0 61.52 0.00 0.00 bin.91 c__Gammaproteobacteria (UID4443) 356 451 270 159 228 52 11 1 0 60.79 18.56 21.98 bin.47 k__Bacteria (UID203) 5449 104 58 64 40 0 0 0 0 59.48 0.00 0.00 bin.57 o__Actinomycetales (UID1572) 580 286 171 139 136 9 2 0 0 58.99 5.46 0.00 bin.116 k__Bacteria (UID1453) 901 171 117 74 90 7 0 0 0 58.35 1.76 14.29 bin.18 k__Bacteria (UID203) 5449 103 58 66 32 5 0 0 0 56.03 6.90 0.00 bin.36 k__Bacteria (UID203) 5449 103 58 40 37 16 6 4 0 54.47 27.05 39.66 bin.77 k__Bacteria (UID203) 5449 104 58 67 36 1 0 0 0 53.79 1.72 0.00 bin.12 c__Gammaproteobacteria (UID4444) 263 503 230 238 252 13 0 0 0 53.11 2.31 7.69 bin.2 f__Moraxellaceae (UID4680) 86 689 365 368 306 15 0 0 0 50.09 1.97 0.00 bin.105 k__Bacteria (UID203) 5449 104 58 67 37 0 0 0 0 48.28 0.00 0.00 bin.71 k__Bacteria (UID203) 5449 104 58 71 33 0 0 0 0 46.72 0.00 0.00 bin.39 k__Bacteria (UID203) 5449 104 58 70 27 7 0 0 0 46.71 10.34 14.29 bin.59 k__Bacteria (UID203) 5449 104 58 76 26 2 0 0 0 44.83 3.45 0.00 bin.22 k__Bacteria (UID203) 5449 103 57 71 32 0 0 0 0 44.74 0.00 0.00 bin.8 c__Gammaproteobacteria (UID4267) 119 544 284 311 223 9 1 0 0 44.16 1.82 8.33 bin.70 k__Bacteria (UID203) 5449 104 58 75 28 1 0 0 0 40.52 0.86 0.00 bin.34 c__Gammaproteobacteria (UID4443) 356 451 270 246 196 9 0 0 0 39.27 1.69 55.56 bin.5 k__Bacteria (UID203) 5449 104 58 74 29 1 0 0 0 38.95 1.72 100.00 bin.27 k__Bacteria (UID203) 5449 104 58 79 25 0 0 0 0 36.36 0.00 0.00 bin.82 k__Bacteria (UID203) 5449 99 53 78 17 2 2 0 0 33.96 11.32 12.50 bin.1 k__Bacteria (UID203) 5449 104 58 83 21 0 0 0 0 31.38 0.00 0.00 bin.51 c__Alphaproteobacteria (UID3422) 26 529 308 348 176 5 0 0 0 30.88 0.97 0.00 bin.30 k__Bacteria (UID203) 5449 103 57 85 15 3 0 0 0 26.32 3.51 0.00 bin.38 k__Bacteria (UID203) 5449 104 58 83 19 2 0 0 0 26.19 3.45 100.00 bin.15 k__Bacteria (UID203) 5449 104 58 79 20 3 2 0 0 26.11 11.21 100.00 bin.61 o__Burkholderiales (UID4105) 54 553 264 374 173 6 0 0 0 25.31 0.84 16.67 bin.64 k__Bacteria (UID203) 5449 104 58 86 18 0 0 0 0 24.29 0.00 0.00 bin.83 k__Bacteria (UID203) 5449 103 57 89 14 0 0 0 0 23.68 0.00 0.00 bin.80 k__Bacteria (UID203) 5449 104 58 87 17 0 0 0 0 22.93 0.00 0.00 bin.118 k__Bacteria (UID203) 5449 104 58 89 14 1 0 0 0 21.72 1.72 100.00 bin.23 k__Bacteria (UID203) 5449 104 58 91 13 0 0 0 0 17.41 0.00 0.00 bin.72 k__Bacteria (UID203) 5449 104 58 93 10 1 0 0 0 17.24 1.72 100.00 bin.19 k__Bacteria (UID203) 5449 104 58 64 20 17 3 0 0 17.15 7.99 53.85 bin.6 c__Gammaproteobacteria (UID4443) 356 451 270 358 90 3 0 0 0 15.25 0.56 0.00 bin.52 k__Bacteria (UID203) 5449 103 58 95 8 0 0 0 0 13.79 0.00 0.00 bin.48 k__Bacteria (UID203) 5449 100 54 91 1 1 4 1 2 12.96 31.48 20.51 bin.75 root (UID1) 5656 56 24 53 3 0 0 0 0 12.50 0.00 0.00 bin.11 root (UID1) 5656 56 24 53 3 0 0 0 0 12.50 0.00 0.00 bin.79 k__Bacteria (UID203) 5449 104 58 97 7 0 0 0 0 12.07 0.00 0.00 bin.17 k__Bacteria (UID203) 5449 104 58 98 6 0 0 0 0 10.34 0.00 0.00 bin.55 root (UID1) 5656 56 24 45 1 0 0 0 10 9.38 51.04 2.07 bin.42 k__Archaea (UID2) 207 149 107 126 9 11 3 0 0 8.65 6.65 0.00 bin.28 root (UID1) 5656 56 24 46 0 10 0 0 0 8.33 8.33 10.00 bin.29 root (UID1) 5656 56 24 49 1 1 5 0 0 7.52 6.25 6.25 bin.67 k__Archaea (UID2) 207 149 107 132 10 7 0 0 0 6.10 0.50 0.00 bin.63 root (UID1) 5656 56 24 46 1 7 2 0 0 5.21 5.09 0.00 bin.50 root (UID1) 5656 56 24 55 1 0 0 0 0 4.17 0.00 0.00 bin.110 root (UID1) 5656 56 24 55 1 0 0 0 0 4.17 0.00 0.00 bin.103 root (UID1) 5656 56 24 55 1 0 0 0 0 4.17 0.00 0.00 bin.74 k__Archaea (UID2) 207 149 107 133 16 0 0 0 0 3.91 0.00 0.00 bin.66 k__Archaea (UID2) 207 149 107 134 15 0 0 0 0 3.67 0.00 0.00 bin.25 k__Bacteria (UID203) 5449 104 58 102 2 0 0 0 0 3.45 0.00 0.00 bin.88 root (UID1) 5656 56 24 56 0 0 0 0 0 0.00 0.00 0.00 bin.78 root (UID1) 5656 56 24 56 0 0 0 0 0 0.00 0.00 0.00 bin.44 root (UID1) 5656 56 24 56 0 0 0 0 0 0.00 0.00 0.00 bin.26 root (UID1) 5656 56 { Current stage: 0:01:46.767 || Total: 0:41:28.882 } 24 56 0 0 0 0 0 0.00 0.00 0.00 bin.16 root (UID1) 5656 56 24 56 0 0 0 0 0 0.00 0.00 0.00 bin.115 root (UID1) 5656 56 24 56 0 0 0 0 0 0.00 0.00 0.00 ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------