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Significant differences between gtdbtk de_novo_wf (GTDB-Tk v2.3.2) and gtdbtk classify_wf (GTDB-Tk v2.1.0)
#613
opened Nov 26, 2024 by
473021677
ERROR: An error was encountered while running hmmsearch.
error
Help required for a GTDB-Tk error.
#612
opened Nov 18, 2024 by
J-Weijie98
it also hang on during "Identifying TIGRFAM protein families." gtdbtk-2.3.2
error
Help required for a GTDB-Tk error.
#608
opened Oct 22, 2024 by
Caiyulu-818
Skani external command error
error
Help required for a GTDB-Tk error.
#606
opened Oct 14, 2024 by
magicprotoss
How can we construct a phylogenetic tree that includes both bacteria and archaea?
#605
opened Oct 10, 2024 by
qbdong122
FastTree returned a non-zero exit code
error
Help required for a GTDB-Tk error.
#604
opened Oct 1, 2024 by
esraagithub
1 task
GTDB-Tk/2.4.0 - Spirochaetota clustering far from other bacteria from the same phylum
#598
opened Aug 13, 2024 by
ValterAlmeida
Troubleshooting GTDB-Tk Database Installation and Environment Configuration
error
Help required for a GTDB-Tk error.
#596
opened Jul 16, 2024 by
soojunglee98
3 tasks
Bacterial GTDB-Tk classification file does not exist error when using gtdb_to_ncbi_majority_vote.py
error
Help required for a GTDB-Tk error.
#595
opened Jun 22, 2024 by
schmittel
Total genome counter in log is off (warning message)
error
Help required for a GTDB-Tk error.
#585
opened Apr 26, 2024 by
GabeAl
Error running Prodigal on genome
error
Help required for a GTDB-Tk error.
#566
opened Dec 20, 2023 by
fhdbqr
2 tasks
Use Pyrodigal as Prodigal alternative
enhancement
Proposed feature or change to GTDB-Tk.
#456
opened Dec 5, 2022 by
lfenske-93
Write debug file on exception
enhancement
Proposed feature or change to GTDB-Tk.
#432
opened Sep 11, 2022 by
aaronmussig
Subroutines for classify
enhancement
Proposed feature or change to GTDB-Tk.
#358
opened Nov 8, 2021 by
SilasK
Unnecessary computation in de novo workflow
enhancement
Proposed feature or change to GTDB-Tk.
#243
opened Apr 20, 2020 by
donovan-h-parks
Establish novelty of user genomes
enhancement
Proposed feature or change to GTDB-Tk.
#233
opened Mar 13, 2020 by
donovan-h-parks
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