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/* i/o of multiple sequence alignment files in aligned FASTA format
*/
#ifndef eslMSAFILE_AFA_INCLUDED
#define eslMSAFILE_AFA_INCLUDED
#include "esl_config.h"
#include "esl_msa.h"
#include "esl_msafile.h"
extern int esl_msafile_afa_SetInmap (ESL_MSAFILE *afp);
extern int esl_msafile_afa_GuessAlphabet(ESL_MSAFILE *afp, int *ret_type);
extern int esl_msafile_afa_Read (ESL_MSAFILE *afp, ESL_MSA **ret_msa);
extern int esl_msafile_afa_Write (FILE *fp, const ESL_MSA *msa);
#endif /* eslMSAFILE_AFA_INCLUDED */
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