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/* I/O of multiple alignment files in Stockholm/Pfam format
*/
#ifndef eslMSAFILE_STOCKHOLM_INCLUDED
#define eslMSAFILE_STOCKHOLM_INCLUDED
#include "esl_config.h"
#include <stdio.h>
#include <esl_msafile.h>
extern int esl_msafile_stockholm_SetInmap (ESL_MSAFILE *afp);
extern int esl_msafile_stockholm_GuessAlphabet(ESL_MSAFILE *afp, int *ret_type);
extern int esl_msafile_stockholm_Read (ESL_MSAFILE *afp, ESL_MSA **ret_msa);
extern int esl_msafile_stockholm_Write (FILE *fp, const ESL_MSA *msa, int fmt);
#endif /*eslMSAFILE_STOCKHOLM_INCLUDED*/
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