+ cd hmmer-3.2 + CFLAGS='-fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection' + export CXXFLAGS + FFLAGS='-fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection' + export FFLAGS + ./configure --host=powerpc64-suse-linux-gnu --build=powerpc64-suse-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/lib --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --disable-dependency-tracking configure: WARNING: unrecognized options: --disable-dependency-tracking, --disable-dependency-tracking configure: Configuring HMMER3 for your system. checking build system type... powerpc64-suse-linux-gnu checking host system type... powerpc64-suse-linux-gnu checking for powerpc64-suse-linux-gnu-gcc... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for a BSD-compatible install... /usr/bin/install -c checking for powerpc64-suse-linux-gnu-ranlib... no checking for ranlib... ranlib checking for ar... /usr/bin/ar checking whether ln -s works... yes checking for C compiler vendor... gnu checking for gcc option to accept ISO C99... none needed checking for gcc option to accept ISO Standard C... (cached) none needed checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking whether gcc is Clang... no checking whether pthreads work with -pthread... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking whether more special flags are required for pthreads... no checking for PTHREAD_PRIO_INHERIT... yes checking whether gcc can compile our Altivec/VMX code... yes, with -maltivec checking whether gcc can compile our SSE code... no configure: Activating Altivec/VMX vector DP implementation checking compiler support --start-group... yes checking for gzip... /usr/bin/gzip checking for library containing clock_gettime... none required checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking endian.h usability... yes checking endian.h presence... yes checking for endian.h... yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/types.h... (cached) yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking for sys/sysctl.h... yes checking altivec.h usability... yes checking altivec.h presence... yes checking for altivec.h... yes checking whether byte ordering is bigendian... yes checking for uint8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for off_t... yes checking for __attribute__((noreturn))... yes checking for __attribute__((format))... yes checking for mkstemp... yes checking for popen... yes checking for putenv... yes checking for strcasecmp... yes checking for strsep... yes checking for times... yes checking for getpid... yes checking for sysctl... yes checking for sysconf... yes checking for getcwd... yes checking for chmod... yes checking for stat... yes checking for fstat... yes checking for erfc... no checking for library containing ntohs... none required checking for library containing ntohl... none required checking for library containing htons... none required checking for library containing htonl... none required checking for library containing socket... none required checking for library containing inet_pton... none required checking for _LARGEFILE_SOURCE value needed for large files... no checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating testsuite/Makefile config.status: creating profmark/Makefile config.status: creating src/impl_vmx/Makefile config.status: creating documentation/Makefile config.status: creating documentation/man/Makefile config.status: creating documentation/userguide/Makefile config.status: creating libdivsufsort/Makefile config.status: creating easel/Makefile config.status: creating easel/miniapps/Makefile config.status: creating easel/testsuite/Makefile config.status: creating easel/documentation/Makefile config.status: creating documentation/userguide/titlepage.tex config.status: creating documentation/userguide/copyright.tex config.status: creating documentation/man/alimask.man config.status: creating documentation/man/hmmalign.man config.status: creating documentation/man/hmmbuild.man config.status: creating documentation/man/hmmconvert.man config.status: creating documentation/man/hmmemit.man config.status: creating documentation/man/hmmer.man config.status: creating documentation/man/hmmfetch.man config.status: creating documentation/man/hmmlogo.man config.status: creating documentation/man/hmmpgmd.man config.status: creating documentation/man/hmmpress.man config.status: creating documentation/man/hmmscan.man config.status: creating documentation/man/hmmsearch.man config.status: creating documentation/man/hmmsim.man config.status: creating documentation/man/hmmstat.man config.status: creating documentation/man/jackhmmer.man config.status: creating documentation/man/makehmmerdb.man config.status: creating documentation/man/nhmmer.man config.status: creating documentation/man/nhmmscan.man config.status: creating documentation/man/phmmer.man config.status: creating easel/miniapps/esl-afetch.man config.status: creating easel/miniapps/esl-alimanip.man config.status: creating easel/miniapps/esl-alimap.man config.status: creating easel/miniapps/esl-alimask.man config.status: creating easel/miniapps/esl-alimerge.man config.status: creating easel/miniapps/esl-alipid.man config.status: creating easel/miniapps/esl-alirev.man config.status: creating easel/miniapps/esl-alistat.man config.status: creating easel/miniapps/esl-compalign.man config.status: creating easel/miniapps/esl-compstruct.man config.status: creating easel/miniapps/esl-construct.man config.status: creating easel/miniapps/esl-histplot.man config.status: creating easel/miniapps/esl-mask.man config.status: creating easel/miniapps/esl-reformat.man config.status: creating easel/miniapps/esl-selectn.man config.status: creating easel/miniapps/esl-seqrange.man config.status: creating easel/miniapps/esl-seqstat.man config.status: creating easel/miniapps/esl-sfetch.man config.status: creating easel/miniapps/esl-shuffle.man config.status: creating easel/miniapps/esl-ssdraw.man config.status: creating easel/miniapps/esl-translate.man config.status: creating easel/miniapps/esl-weight.man config.status: creating easel/decoy_config.h config.status: creating src/p7_config.h config.status: creating easel/esl_config.h config.status: creating libdivsufsort/divsufsort.h config.status: linking src/impl_vmx to src/impl configure: WARNING: unrecognized options: --disable-dependency-tracking, --disable-dependency-tracking HMMER configuration: compiler: gcc -O3 -maltivec -pthread host: powerpc64-suse-linux-gnu linker: libraries: DP implementation: vmx Do 'make' to build HMMER, and optionally: 'make check' to run self tests, 'make install' to install programs and man pages, '(cd easel; make install)' to install Easel tools. + make -j8 SUBDIR easel CC easel.o CC esl_alloc.o CC esl_alphabet.o CC esl_arr2.o CC esl_arr3.o CC esl_buffer.o CC esl_composition.o CC esl_cluster.o CC esl_cpu.o CC esl_dirichlet.o CC esl_distance.o CC esl_dmatrix.o CC esl_dsqdata.o CC esl_exponential.o CC esl_fileparser.o CC esl_gamma.o CC esl_gencode.o CC esl_getopts.o CC esl_gev.o CC esl_gumbel.o CC esl_heap.o CC esl_histogram.o CC esl_hmm.o CC esl_huffman.o CC esl_hyperexp.o CC esl_keyhash.o CC esl_mem.o CC esl_minimizer.o CC esl_mixgev.o CC esl_mpi.o CC esl_msa.o CC esl_msacluster.o CC esl_msafile.o CC esl_msafile2.o CC esl_msafile_a2m.o CC esl_msafile_afa.o CC esl_msafile_clustal.o CC esl_msafile_phylip.o CC esl_msafile_psiblast.o CC esl_msafile_selex.o CC esl_msafile_stockholm.o CC esl_msashuffle.o CC esl_msaweight.o CC esl_normal.o CC esl_paml.o CC esl_quicksort.o CC esl_random.o CC esl_randomseq.o CC esl_ratematrix.o CC esl_recorder.o CC esl_red_black.o CC esl_regexp.o CC esl_rootfinder.o CC esl_scorematrix.o CC esl_sq.o CC esl_sqio.o CC esl_sqio_ascii.o CC esl_sqio_ncbi.o CC esl_ssi.o CC esl_stack.o CC esl_stats.o CC esl_stopwatch.o CC esl_stretchexp.o CC esl_threads.o CC esl_tree.o CC esl_vectorops.o CC esl_weibull.o CC esl_workqueue.o CC esl_wuss.o CC esl_sse.o CC esl_avx.o CC esl_avx512.o CC esl_neon.o CC esl_vmx.o AR libeasel.a SUBDIR miniapps GEN esl-afetch GEN esl-alimanip GEN esl-alimap GEN esl-alimask GEN esl-alimerge GEN esl-alipid GEN esl-alirev GEN esl-alistat GEN esl-compalign GEN esl-compstruct GEN esl-construct GEN esl-histplot GEN esl-mask GEN esl-reformat GEN esl-selectn GEN esl-seqrange GEN esl-seqstat GEN esl-sfetch GEN esl-shuffle GEN esl-ssdraw GEN esl-translate GEN esl-weight SUBDIR libdivsufsort CC divsufsort.o AR libdivsufsort.a SUBDIR src CC alimask.o CC build.o CC cachedb.o CC emit.o CC errors.o CC evalues.o CC eweight.o CC generic_decoding.o In file included from impl_vmx/impl_vmx.h:11:0, from hmmer.h:825, from alimask.c:23: /usr/lib64/gcc/powerpc64-suse-linux/7/include/altivec.h:34:2: error: #error Use the "-maltivec" flag to enable PowerPC AltiVec support #error Use the "-maltivec" flag to enable PowerPC AltiVec support ^~~~~ In file included from impl_vmx/impl_vmx.h:11:0, from hmmer.h:825, from emit.c:18: /usr/lib64/gcc/powerpc64-suse-linux/7/include/altivec.h:34:2: error: #error Use the "-maltivec" flag to enable PowerPC AltiVec support #error Use the "-maltivec" flag to enable PowerPC AltiVec support ^~~~~ In file included from impl_vmx/impl_vmx.h:11:0, from hmmer.h:825, from errors.c:19: /usr/lib64/gcc/powerpc64-suse-linux/7/include/altivec.h:34:2: error: #error Use the "-maltivec" flag to enable PowerPC AltiVec support #error Use the "-maltivec" flag to enable PowerPC AltiVec support ^~~~~ In file included from impl_vmx/impl_vmx.h:11:0, from hmmer.h:825, from evalues.c:19: /usr/lib64/gcc/powerpc64-suse-linux/7/include/altivec.h:34:2: error: #error Use the "-maltivec" flag to enable PowerPC AltiVec support #error Use the "-maltivec" flag to enable PowerPC AltiVec support ^~~~~ In file included from impl_vmx/impl_vmx.h:11:0, from hmmer.h:825, from eweight.c:15: /usr/lib64/gcc/powerpc64-suse-linux/7/include/altivec.h:34:2: error: #error Use the "-maltivec" flag to enable PowerPC AltiVec support #error Use the "-maltivec" flag to enable PowerPC AltiVec support ^~~~~ impl_vmx/impl_vmx.h:73:3: error: expected specifier-qualifier-list before '__vector' are allocated */ ^ impl_vmx/impl_vmx.h: In function 'p7_oprofile_FGetEmission': impl_vmx/impl_vmx.h:149:11: error: expected specifier-qualifier-list before '__vector' ; } u; ^ In file included from alimask.c:11:0: impl_vmx/impl_vmx.h:150:23: error: 'P7_OPROFILE {aka const struct p7_oprofile_s}' has no member named 'M' int Q = p7O_NQF(om->M); ^ ../easel/easel.h:403:38: note: in definition of macro 'ESL_MAX' #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) ^ impl_vmx/impl_vmx.h:150:13: note: in expansion of macro 'p7O_NQF' int Q = p7O_NQF(om->M); ^~~~~~~ impl_vmx/impl_vmx.h:73:3: error: expected specifier-qualifier-list before '__vector' are allocated */ ^ In file included from impl_vmx/impl_vmx.h:11:0, from hmmer.h:825, from build.c:32: /usr/lib64/gcc/powerpc64-suse-linux/7/include/altivec.h:34:2: error: #error Use the "-maltivec" flag to enable PowerPC AltiVec support #error Use the "-maltivec" flag to enable PowerPC AltiVec support ^~~~~ impl_vmx/impl_vmx.h:150:23: error: 'P7_OPROFILE {aka const struct p7_oprofile_s}' has no member named 'M' int Q = p7O_NQF(om->M); ^ ../easel/easel.h:403:47: note: in definition of macro 'ESL_MAX' #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) ^ impl_vmx/impl_vmx.h:150:13: note: in expansion of macro 'p7O_NQF' int Q = p7O_NQF(om->M); ^~~~~~~ In file included from hmmer.h:825:0, from alimask.c:23: impl_vmx/impl_vmx.h:153:4: error: 'union ' has no member named 'v' ; ^ impl_vmx/impl_vmx.h:153:11: error: 'P7_OPROFILE {aka const struct p7_oprofile_s}' has no member named 'rfv' ; ^~ impl_vmx/impl_vmx.h: In function 'p7_oprofile_FGetEmission': impl_vmx/impl_vmx.h:154:11: error: 'union ' has no member named 'p' ; ^ impl_vmx/impl_vmx.h:149:11: error: expected specifier-qualifier-list before '__vector' ; } u; ^ In file included from impl_vmx/impl_vmx.h:11:0, from hmmer.h:825, from alimask.c:23: impl_vmx/impl_vmx.h: At top level: impl_vmx/impl_vmx.h:182:3: error: expected specifier-qualifier-list before '__vector' , float vectors */ ^ In file included from emit.c:13:0: impl_vmx/impl_vmx.h:150:23: error: 'P7_OPROFILE {aka const struct p7_oprofile_s}' has no member named 'M' int Q = p7O_NQF(om->M); ^ ../easel/easel.h:403:38: note: in definition of macro 'ESL_MAX' #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) ^ impl_vmx/impl_vmx.h:150:13: note: in expansion of macro 'p7O_NQF' int Q = p7O_NQF(om->M); ^~~~~~~ impl_vmx/impl_vmx.h: In function 'p7_omx_FGetMDI': impl_vmx/impl_vmx.h:223:11: error: expected specifier-qualifier-list before '__vector' ; } u; ^ impl_vmx/impl_vmx.h:150:23: error: 'P7_OPROFILE {aka const struct p7_oprofile_s}' has no member named 'M' int Q = p7O_NQF(om->M); ^ ../easel/easel.h:403:47: note: in definition of macro 'ESL_MAX' #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) ^ impl_vmx/impl_vmx.h:150:13: note: in expansion of macro 'p7O_NQF' int Q = p7O_NQF(om->M); ^~~~~~~ In file included from impl_vmx/impl_vmx.h:11:0, from hmmer.h:825, from generic_decoding.c:14: /usr/lib64/gcc/powerpc64-suse-linux/7/include/altivec.h:34:2: error: #error Use the "-maltivec" flag to enable PowerPC AltiVec support #error Use the "-maltivec" flag to enable PowerPC AltiVec support ^~~~~ In file included from hmmer.h:825:0, from emit.c:18: impl_vmx/impl_vmx.h:153:4: error: 'union ' has no member named 'v' ; ^ impl_vmx/impl_vmx.h:153:11: error: 'P7_OPROFILE {aka const struct p7_oprofile_s}' has no member named 'rfv' ; ^~ impl_vmx/impl_vmx.h:154:11: error: 'union ' has no member named 'p' ; ^ In file included from hmmer.h:825:0, from alimask.c:23: impl_vmx/impl_vmx.h:227:4: error: 'union ' has no member named 'v' ; ^ In file included from impl_vmx/impl_vmx.h:11:0, from hmmer.h:825, from emit.c:18: impl_vmx/impl_vmx.h: At top level: impl_vmx/impl_vmx.h:227:11: error: 'P7_OMX {aka const struct p7_omx_s}' has no member named 'dpf' ; ^~ impl_vmx/impl_vmx.h:182:3: error: expected specifier-qualifier-list before '__vector' , float vectors */ ^ impl_vmx/impl_vmx.h:228:11: error: 'union ' has no member named 'p' ; ^ In file included from impl_vmx/impl_vmx.h:11:0, from hmmer.h:825, from alimask.c:23: impl_vmx/impl_vmx.h: In function 'p7_omx_FSetMDI': impl_vmx/impl_vmx.h:234:11: error: expected specifier-qualifier-list before '__vector' ; } u; ^ impl_vmx/impl_vmx.h: In function 'p7_omx_FGetMDI': impl_vmx/impl_vmx.h:223:11: error: expected specifier-qualifier-list before '__vector' ; } u; ^ In file included from hmmer.h:825:0, from alimask.c:23: impl_vmx/impl_vmx.h:239:4: error: 'union ' has no member named 'v' ; ^ impl_vmx/impl_vmx.h:239:21: error: 'P7_OMX {aka const struct p7_omx_s}' has no member named 'dpf' ; ^~ In file included from hmmer.h:825:0, from emit.c:18: impl_vmx/impl_vmx.h:227:4: error: 'union ' has no member named 'v' ; ^ impl_vmx/impl_vmx.h:240:4: error: 'union ' has no member named 'p' = val; ^ impl_vmx/impl_vmx.h:73:3: error: expected specifier-qualifier-list before '__vector' are allocated */ ^ impl_vmx/impl_vmx.h:227:11: error: 'P7_OMX {aka const struct p7_omx_s}' has no member named 'dpf' ; ^~ impl_vmx/impl_vmx.h:241:5: error: 'P7_OMX {aka const struct p7_omx_s}' has no member named 'dpf' = u.v; ^~ impl_vmx/impl_vmx.h:228:11: error: 'union ' has no member named 'p' ; ^ impl_vmx/impl_vmx.h:241:20: error: 'union ' has no member named 'v' = u.v; ^ In file included from impl_vmx/impl_vmx.h:11:0, from hmmer.h:825, from emit.c:18: impl_vmx/impl_vmx.h: In function 'p7_omx_FSetMDI': impl_vmx/impl_vmx.h:234:11: error: expected specifier-qualifier-list before '__vector' ; } u; ^ impl_vmx/impl_vmx.h: In function 'p7_oprofile_FGetEmission': impl_vmx/impl_vmx.h:149:11: error: expected specifier-qualifier-list before '__vector' ; } u; ^ In file included from hmmer.h:825:0, from emit.c:18: impl_vmx/impl_vmx.h:239:4: error: 'union ' has no member named 'v' ; ^ impl_vmx/impl_vmx.h:239:21: error: 'P7_OMX {aka const struct p7_omx_s}' has no member named 'dpf' ; ^~ impl_vmx/impl_vmx.h:240:4: error: 'union ' has no member named 'p' = val; ^ impl_vmx/impl_vmx.h:241:5: error: 'P7_OMX {aka const struct p7_omx_s}' has no member named 'dpf' = u.v; ^~ In file included from hmmer.h:41:0, from errors.c:19: impl_vmx/impl_vmx.h:150:23: error: 'P7_OPROFILE {aka const struct p7_oprofile_s}' has no member named 'M' int Q = p7O_NQF(om->M); ^ ../easel/easel.h:403:38: note: in definition of macro 'ESL_MAX' #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) ^ impl_vmx/impl_vmx.h:150:13: note: in expansion of macro 'p7O_NQF' int Q = p7O_NQF(om->M); ^~~~~~~ impl_vmx/impl_vmx.h:241:20: error: 'union ' has no member named 'v' = u.v; ^ impl_vmx/impl_vmx.h:150:23: error: 'P7_OPROFILE {aka const struct p7_oprofile_s}' has no member named 'M' int Q = p7O_NQF(om->M); ^ ../easel/easel.h:403:47: note: in definition of macro 'ESL_MAX' #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) ^ impl_vmx/impl_vmx.h:150:13: note: in expansion of macro 'p7O_NQF' int Q = p7O_NQF(om->M); ^~~~~~~ In file included from hmmer.h:825:0, from errors.c:19: impl_vmx/impl_vmx.h:153:4: error: 'union ' has no member named 'v' ; ^ impl_vmx/impl_vmx.h:153:11: error: 'P7_OPROFILE {aka const struct p7_oprofile_s}' has no member named 'rfv' ; ^~ impl_vmx/impl_vmx.h:154:11: error: 'union ' has no member named 'p' ; ^ In file included from impl_vmx/impl_vmx.h:11:0, from hmmer.h:825, from errors.c:19: impl_vmx/impl_vmx.h: At top level: impl_vmx/impl_vmx.h:182:3: error: expected specifier-qualifier-list before '__vector' , float vectors */ ^ impl_vmx/impl_vmx.h: In function 'p7_omx_FGetMDI': impl_vmx/impl_vmx.h:223:11: error: expected specifier-qualifier-list before '__vector' ; } u; ^ impl_vmx/impl_vmx.h:73:3: error: expected specifier-qualifier-list before '__vector' are allocated */ ^ In file included from hmmer.h:825:0, from errors.c:19: impl_vmx/impl_vmx.h:227:4: error: 'union ' has no member named 'v' ; ^ impl_vmx/impl_vmx.h:227:11: error: 'P7_OMX {aka const struct p7_omx_s}' has no member named 'dpf' ; ^~ impl_vmx/impl_vmx.h:228:11: error: 'union ' has no member named 'p' ; ^ In file included from impl_vmx/impl_vmx.h:11:0, from hmmer.h:825, from errors.c:19: impl_vmx/impl_vmx.h: In function 'p7_omx_FSetMDI': impl_vmx/impl_vmx.h:234:11: error: expected specifier-qualifier-list before '__vector' ; } u; ^ impl_vmx/impl_vmx.h: In function 'p7_oprofile_FGetEmission': impl_vmx/impl_vmx.h:149:11: error: expected specifier-qualifier-list before '__vector' ; } u; ^ impl_vmx/impl_vmx.h:73:3: error: expected specifier-qualifier-list before '__vector' are allocated */ ^ In file included from hmmer.h:825:0, from errors.c:19: impl_vmx/impl_vmx.h:239:4: error: 'union ' has no member named 'v' ; ^ In file included from evalues.c:13:0: impl_vmx/impl_vmx.h:150:23: error: 'P7_OPROFILE {aka const struct p7_oprofile_s}' has no member named 'M' int Q = p7O_NQF(om->M); ^ ../easel/easel.h:403:38: note: in definition of macro 'ESL_MAX' #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) ^ impl_vmx/impl_vmx.h:150:13: note: in expansion of macro 'p7O_NQF' int Q = p7O_NQF(om->M); ^~~~~~~ impl_vmx/impl_vmx.h:239:21: error: 'P7_OMX {aka const struct p7_omx_s}' has no member named 'dpf' ; ^~ impl_vmx/impl_vmx.h:240:4: error: 'union ' has no member named 'p' = val; ^ impl_vmx/impl_vmx.h:150:23: error: 'P7_OPROFILE {aka const struct p7_oprofile_s}' has no member named 'M' int Q = p7O_NQF(om->M); ^ ../easel/easel.h:403:47: note: in definition of macro 'ESL_MAX' #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) ^ impl_vmx/impl_vmx.h:150:13: note: in expansion of macro 'p7O_NQF' int Q = p7O_NQF(om->M); ^~~~~~~ impl_vmx/impl_vmx.h:241:5: error: 'P7_OMX {aka const struct p7_omx_s}' has no member named 'dpf' = u.v; ^~ impl_vmx/impl_vmx.h:241:20: error: 'union ' has no member named 'v' = u.v; ^ impl_vmx/impl_vmx.h: In function 'p7_oprofile_FGetEmission': In file included from hmmer.h:825:0, from evalues.c:19: impl_vmx/impl_vmx.h:153:4: error: 'union ' has no member named 'v' ; ^ impl_vmx/impl_vmx.h:149:11: error: expected specifier-qualifier-list before '__vector' ; } u; ^ impl_vmx/impl_vmx.h:153:11: error: 'P7_OPROFILE {aka const struct p7_oprofile_s}' has no member named 'rfv' ; ^~ impl_vmx/impl_vmx.h:154:11: error: 'union ' has no member named 'p' ; ^ In file included from impl_vmx/impl_vmx.h:11:0, from hmmer.h:825, from evalues.c:19: impl_vmx/impl_vmx.h: At top level: impl_vmx/impl_vmx.h:182:3: error: expected specifier-qualifier-list before '__vector' , float vectors */ ^ In file included from eweight.c:12:0: impl_vmx/impl_vmx.h:150:23: error: 'P7_OPROFILE {aka const struct p7_oprofile_s}' has no member named 'M' int Q = p7O_NQF(om->M); ^ ../easel/easel.h:403:38: note: in definition of macro 'ESL_MAX' #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) ^ impl_vmx/impl_vmx.h:150:13: note: in expansion of macro 'p7O_NQF' int Q = p7O_NQF(om->M); ^~~~~~~ impl_vmx/impl_vmx.h:150:23: error: 'P7_OPROFILE {aka const struct p7_oprofile_s}' has no member named 'M' int Q = p7O_NQF(om->M); ^ ../easel/easel.h:403:47: note: in definition of macro 'ESL_MAX' #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) ^ impl_vmx/impl_vmx.h:150:13: note: in expansion of macro 'p7O_NQF' int Q = p7O_NQF(om->M); ^~~~~~~ impl_vmx/impl_vmx.h: In function 'p7_omx_FGetMDI': impl_vmx/impl_vmx.h:223:11: error: expected specifier-qualifier-list before '__vector' ; } u; ^ In file included from hmmer.h:825:0, from eweight.c:15: impl_vmx/impl_vmx.h:153:4: error: 'union ' has no member named 'v' ; ^ impl_vmx/impl_vmx.h:153:11: error: 'P7_OPROFILE {aka const struct p7_oprofile_s}' has no member named 'rfv' ; ^~ impl_vmx/impl_vmx.h:154:11: error: 'union ' has no member named 'p' ; ^ In file included from impl_vmx/impl_vmx.h:11:0, from hmmer.h:825, from eweight.c:15: impl_vmx/impl_vmx.h: At top level: In file included from hmmer.h:825:0, from evalues.c:19: impl_vmx/impl_vmx.h:227:4: error: 'union ' has no member named 'v' ; ^ impl_vmx/impl_vmx.h:182:3: error: expected specifier-qualifier-list before '__vector' , float vectors */ ^ impl_vmx/impl_vmx.h:227:11: error: 'P7_OMX {aka const struct p7_omx_s}' has no member named 'dpf' ; ^~ impl_vmx/impl_vmx.h:228:11: error: 'union ' has no member named 'p' ; ^ In file included from impl_vmx/impl_vmx.h:11:0, from hmmer.h:825, from evalues.c:19: impl_vmx/impl_vmx.h: In function 'p7_omx_FSetMDI': impl_vmx/impl_vmx.h: In function 'p7_omx_FGetMDI': impl_vmx/impl_vmx.h:234:11: error: expected specifier-qualifier-list before '__vector' ; } u; ^ impl_vmx/impl_vmx.h:223:11: error: expected specifier-qualifier-list before '__vector' ; } u; ^ In file included from hmmer.h:825:0, from evalues.c:19: impl_vmx/impl_vmx.h:239:4: error: 'union ' has no member named 'v' ; ^ In file included from hmmer.h:825:0, from eweight.c:15: impl_vmx/impl_vmx.h:227:4: error: 'union ' has no member named 'v' ; ^ impl_vmx/impl_vmx.h:239:21: error: 'P7_OMX {aka const struct p7_omx_s}' has no member named 'dpf' ; ^~ impl_vmx/impl_vmx.h:240:4: error: 'union ' has no member named 'p' = val; ^ impl_vmx/impl_vmx.h:227:11: error: 'P7_OMX {aka const struct p7_omx_s}' has no member named 'dpf' ; ^~ impl_vmx/impl_vmx.h:228:11: error: 'union ' has no member named 'p' ; ^ impl_vmx/impl_vmx.h:241:5: error: 'P7_OMX {aka const struct p7_omx_s}' has no member named 'dpf' = u.v; ^~ impl_vmx/impl_vmx.h:241:20: error: 'union ' has no member named 'v' = u.v; ^ In file included from impl_vmx/impl_vmx.h:11:0, from hmmer.h:825, from eweight.c:15: impl_vmx/impl_vmx.h: In function 'p7_omx_FSetMDI': impl_vmx/impl_vmx.h:234:11: error: expected specifier-qualifier-list before '__vector' ; } u; ^ impl_vmx/impl_vmx.h:73:3: error: expected specifier-qualifier-list before '__vector' are allocated */ ^ In file included from hmmer.h:825:0, from eweight.c:15: impl_vmx/impl_vmx.h:239:4: error: 'union ' has no member named 'v' ; ^ impl_vmx/impl_vmx.h:239:21: error: 'P7_OMX {aka const struct p7_omx_s}' has no member named 'dpf' ; ^~ impl_vmx/impl_vmx.h: In function 'p7_oprofile_FGetEmission': impl_vmx/impl_vmx.h:149:11: error: expected specifier-qualifier-list before '__vector' ; } u; ^ impl_vmx/impl_vmx.h:240:4: error: 'union ' has no member named 'p' = val; ^ impl_vmx/impl_vmx.h:241:5: error: 'P7_OMX {aka const struct p7_omx_s}' has no member named 'dpf' = u.v; ^~ impl_vmx/impl_vmx.h:241:20: error: 'union ' has no member named 'v' = u.v; ^ In file included from build.c:27:0: impl_vmx/impl_vmx.h:150:23: error: 'P7_OPROFILE {aka const struct p7_oprofile_s}' has no member named 'M' int Q = p7O_NQF(om->M); ^ ../easel/easel.h:403:38: note: in definition of macro 'ESL_MAX' #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) ^ impl_vmx/impl_vmx.h:150:13: note: in expansion of macro 'p7O_NQF' int Q = p7O_NQF(om->M); ^~~~~~~ impl_vmx/impl_vmx.h:150:23: error: 'P7_OPROFILE {aka const struct p7_oprofile_s}' has no member named 'M' int Q = p7O_NQF(om->M); ^ ../easel/easel.h:403:47: note: in definition of macro 'ESL_MAX' #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) ^ impl_vmx/impl_vmx.h:150:13: note: in expansion of macro 'p7O_NQF' int Q = p7O_NQF(om->M); ^~~~~~~ In file included from hmmer.h:825:0, from build.c:32: impl_vmx/impl_vmx.h:153:4: error: 'union ' has no member named 'v' ; ^ impl_vmx/impl_vmx.h:73:3: error: expected specifier-qualifier-list before '__vector' are allocated */ ^ impl_vmx/impl_vmx.h:153:11: error: 'P7_OPROFILE {aka const struct p7_oprofile_s}' has no member named 'rfv' ; ^~ In file included from impl_vmx/impl_vmx.h:11:0, from hmmer.h:825, from cachedb.c:17: /usr/lib64/gcc/powerpc64-suse-linux/7/include/altivec.h:34:2: error: #error Use the "-maltivec" flag to enable PowerPC AltiVec support #error Use the "-maltivec" flag to enable PowerPC AltiVec support ^~~~~ impl_vmx/impl_vmx.h:154:11: error: 'union ' has no member named 'p' ; ^ impl_vmx/impl_vmx.h: In function 'p7_oprofile_FGetEmission': impl_vmx/impl_vmx.h:149:11: error: expected specifier-qualifier-list before '__vector' ; } u; ^ In file included from impl_vmx/impl_vmx.h:11:0, from hmmer.h:825, from build.c:32: impl_vmx/impl_vmx.h: At top level: impl_vmx/impl_vmx.h:182:3: error: expected specifier-qualifier-list before '__vector' , float vectors */ ^ In file included from generic_decoding.c:13:0: impl_vmx/impl_vmx.h:150:23: error: 'P7_OPROFILE {aka const struct p7_oprofile_s}' has no member named 'M' int Q = p7O_NQF(om->M); ^ ../easel/easel.h:403:38: note: in definition of macro 'ESL_MAX' #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) ^ impl_vmx/impl_vmx.h:150:13: note: in expansion of macro 'p7O_NQF' int Q = p7O_NQF(om->M); ^~~~~~~ impl_vmx/impl_vmx.h:150:23: error: 'P7_OPROFILE {aka const struct p7_oprofile_s}' has no member named 'M' int Q = p7O_NQF(om->M); ^ ../easel/easel.h:403:47: note: in definition of macro 'ESL_MAX' #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) ^ impl_vmx/impl_vmx.h:150:13: note: in expansion of macro 'p7O_NQF' int Q = p7O_NQF(om->M); ^~~~~~~ In file included from hmmer.h:825:0, from generic_decoding.c:14: impl_vmx/impl_vmx.h:153:4: error: 'union ' has no member named 'v' ; ^ impl_vmx/impl_vmx.h:153:11: error: 'P7_OPROFILE {aka const struct p7_oprofile_s}' has no member named 'rfv' ; ^~ impl_vmx/impl_vmx.h:154:11: error: 'union ' has no member named 'p' ; ^ In file included from impl_vmx/impl_vmx.h:11:0, from hmmer.h:825, from generic_decoding.c:14: impl_vmx/impl_vmx.h: At top level: impl_vmx/impl_vmx.h: In function 'p7_omx_FGetMDI': impl_vmx/impl_vmx.h:182:3: error: expected specifier-qualifier-list before '__vector' , float vectors */ ^ impl_vmx/impl_vmx.h:223:11: error: expected specifier-qualifier-list before '__vector' ; } u; ^ impl_vmx/impl_vmx.h: In function 'p7_omx_FGetMDI': impl_vmx/impl_vmx.h:223:11: error: expected specifier-qualifier-list before '__vector' ; } u; ^ In file included from hmmer.h:825:0, from generic_decoding.c:14: impl_vmx/impl_vmx.h:227:4: error: 'union ' has no member named 'v' ; ^ impl_vmx/impl_vmx.h:227:11: error: 'P7_OMX {aka const struct p7_omx_s}' has no member named 'dpf' ; ^~ In file included from hmmer.h:825:0, from build.c:32: impl_vmx/impl_vmx.h:227:4: error: 'union ' has no member named 'v' ; ^ impl_vmx/impl_vmx.h:228:11: error: 'union ' has no member named 'p' ; ^ impl_vmx/impl_vmx.h:227:11: error: 'P7_OMX {aka const struct p7_omx_s}' has no member named 'dpf' ; ^~ impl_vmx/impl_vmx.h:228:11: error: 'union ' has no member named 'p' ; ^ In file included from impl_vmx/impl_vmx.h:11:0, from hmmer.h:825, from generic_decoding.c:14: impl_vmx/impl_vmx.h: In function 'p7_omx_FSetMDI': impl_vmx/impl_vmx.h:234:11: error: expected specifier-qualifier-list before '__vector' ; } u; ^ In file included from impl_vmx/impl_vmx.h:11:0, from hmmer.h:825, from build.c:32: impl_vmx/impl_vmx.h: In function 'p7_omx_FSetMDI': impl_vmx/impl_vmx.h:234:11: error: expected specifier-qualifier-list before '__vector' ; } u; ^ In file included from hmmer.h:825:0, from generic_decoding.c:14: impl_vmx/impl_vmx.h:239:4: error: 'union ' has no member named 'v' ; ^ In file included from hmmer.h:825:0, from build.c:32: impl_vmx/impl_vmx.h:239:4: error: 'union ' has no member named 'v' ; ^ impl_vmx/impl_vmx.h:239:21: error: 'P7_OMX {aka const struct p7_omx_s}' has no member named 'dpf' ; ^~ impl_vmx/impl_vmx.h:240:4: error: 'union ' has no member named 'p' = val; ^ impl_vmx/impl_vmx.h:239:21: error: 'P7_OMX {aka const struct p7_omx_s}' has no member named 'dpf' ; ^~ impl_vmx/impl_vmx.h:241:5: error: 'P7_OMX {aka const struct p7_omx_s}' has no member named 'dpf' = u.v; ^~ impl_vmx/impl_vmx.h:240:4: error: 'union ' has no member named 'p' = val; ^ impl_vmx/impl_vmx.h:241:5: error: 'P7_OMX {aka const struct p7_omx_s}' has no member named 'dpf' = u.v; ^~ impl_vmx/impl_vmx.h:241:20: error: 'union ' has no member named 'v' = u.v; ^ impl_vmx/impl_vmx.h:241:20: error: 'union ' has no member named 'v' = u.v; ^ impl_vmx/impl_vmx.h:73:3: error: expected specifier-qualifier-list before '__vector' are allocated */ ^ impl_vmx/impl_vmx.h: In function 'p7_oprofile_FGetEmission': impl_vmx/impl_vmx.h:149:11: error: expected specifier-qualifier-list before '__vector' ; } u; ^ In file included from cachedb.c:10:0: impl_vmx/impl_vmx.h:150:23: error: 'P7_OPROFILE {aka const struct p7_oprofile_s}' has no member named 'M' int Q = p7O_NQF(om->M); ^ ../easel/easel.h:403:38: note: in definition of macro 'ESL_MAX' #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) ^ impl_vmx/impl_vmx.h:150:13: note: in expansion of macro 'p7O_NQF' int Q = p7O_NQF(om->M); ^~~~~~~ impl_vmx/impl_vmx.h:150:23: error: 'P7_OPROFILE {aka const struct p7_oprofile_s}' has no member named 'M' int Q = p7O_NQF(om->M); ^ ../easel/easel.h:403:47: note: in definition of macro 'ESL_MAX' #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) ^ impl_vmx/impl_vmx.h:150:13: note: in expansion of macro 'p7O_NQF' int Q = p7O_NQF(om->M); ^~~~~~~ In file included from hmmer.h:825:0, from cachedb.c:17: impl_vmx/impl_vmx.h:153:4: error: 'union ' has no member named 'v' ; ^ impl_vmx/impl_vmx.h:153:11: error: 'P7_OPROFILE {aka const struct p7_oprofile_s}' has no member named 'rfv' ; ^~ impl_vmx/impl_vmx.h:154:11: error: 'union ' has no member named 'p' ; ^ In file included from impl_vmx/impl_vmx.h:11:0, from hmmer.h:825, from cachedb.c:17: impl_vmx/impl_vmx.h: At top level: impl_vmx/impl_vmx.h:182:3: error: expected specifier-qualifier-list before '__vector' , float vectors */ ^ impl_vmx/impl_vmx.h: In function 'p7_omx_FGetMDI': impl_vmx/impl_vmx.h:223:11: error: expected specifier-qualifier-list before '__vector' ; } u; ^ In file included from hmmer.h:825:0, from cachedb.c:17: impl_vmx/impl_vmx.h:227:4: error: 'union ' has no member named 'v' ; ^ impl_vmx/impl_vmx.h:227:11: error: 'P7_OMX {aka const struct p7_omx_s}' has no member named 'dpf' ; ^~ impl_vmx/impl_vmx.h:228:11: error: 'union ' has no member named 'p' ; ^ In file included from impl_vmx/impl_vmx.h:11:0, from hmmer.h:825, from cachedb.c:17: impl_vmx/impl_vmx.h: In function 'p7_omx_FSetMDI': impl_vmx/impl_vmx.h:234:11: error: expected specifier-qualifier-list before '__vector' ; } u; ^ In file included from hmmer.h:825:0, from cachedb.c:17: impl_vmx/impl_vmx.h:239:4: error: 'union ' has no member named 'v' ; ^ impl_vmx/impl_vmx.h:239:21: error: 'P7_OMX {aka const struct p7_omx_s}' has no member named 'dpf' ; ^~ impl_vmx/impl_vmx.h:240:4: error: 'union ' has no member named 'p' = val; ^ impl_vmx/impl_vmx.h:241:5: error: 'P7_OMX {aka const struct p7_omx_s}' has no member named 'dpf' = u.v; ^~ impl_vmx/impl_vmx.h:241:20: error: 'union ' has no member named 'v' = u.v; ^ evalues.c: In function 'p7_Calibrate': evalues.c:110:32: error: 'P7_OPROFILE {aka struct p7_oprofile_s}' has no member named 'evparam' = lambda; ^~ evalues.c:111:32: error: 'P7_OPROFILE {aka struct p7_oprofile_s}' has no member named 'evparam' = lambda; ^~ evalues.c:112:32: error: 'P7_OPROFILE {aka struct p7_oprofile_s}' has no member named 'evparam' = lambda; ^~ Error 1 : *** Waiting for unfinished jobs.... evalues.c:113:32: error: 'P7_OPROFILE {aka struct p7_oprofile_s}' has no member named 'evparam' = mmu; ^~ evalues.c:114:32: error: 'P7_OPROFILE {aka struct p7_oprofile_s}' has no member named 'evparam' = vmu; ^~ evalues.c:115:32: error: 'P7_OPROFILE {aka struct p7_oprofile_s}' has no member named 'evparam' = tau; ^~ evalues.c: In function 'p7_MSVMu': evalues.c:240:38: error: 'P7_OPROFILE {aka struct p7_oprofile_s}' has no member named 'M' P7_OMX *ox = p7_omx_Create(om->M, 0, 0); /* DP matrix: 1 row version */ ^~ evalues.c:245:31: error: 'P7_OPROFILE {aka struct p7_oprofile_s}' has no member named 'base_b' float maxsc = (255 - om->base_b) / om->scale_b; /* if score overflows, use this */ ^~ evalues.c:245:45: error: 'P7_OPROFILE {aka struct p7_oprofile_s}' has no member named 'scale_b' float maxsc = (255 - om->base_b) / om->scale_b; /* if score overflows, use this */ ^~ evalues.c:257:47: error: 'P7_OPROFILE {aka struct p7_oprofile_s}' has no member named 'abc' if ((status = esl_rsq_xfIID(r, bg->f, om->abc->K, L, dsq)) != eslOK) goto ERROR; ^~ evalues.c: In function 'p7_ViterbiMu': evalues.c:309:38: error: 'P7_OPROFILE {aka struct p7_oprofile_s}' has no member named 'M' P7_OMX *ox = p7_omx_Create(om->M, 0, 0); /* DP matrix: 1 row version */ ^~ evalues.c:314:35: error: 'P7_OPROFILE {aka struct p7_oprofile_s}' has no member named 'base_w' */ ^~ evalues.c:314:49: error: 'P7_OPROFILE {aka struct p7_oprofile_s}' has no member named 'scale_w' */ ^~ evalues.c:326:47: error: 'P7_OPROFILE {aka struct p7_oprofile_s}' has no member named 'abc' if ((status = esl_rsq_xfIID(r, bg->f, om->abc->K, L, dsq)) != eslOK) goto ERROR; ^~ Error 1 evalues.c: In function 'p7_Tau': evalues.c:414:38: error: 'P7_OPROFILE {aka struct p7_oprofile_s}' has no member named 'M' P7_OMX *ox = p7_omx_Create(om->M, 0, L); /* DP matrix: for ForwardParser, L rows */ ^~ evalues.c:431:47: error: 'P7_OPROFILE {aka struct p7_oprofile_s}' has no member named 'abc' if ((status = esl_rsq_xfIID(r, bg->f, om->abc->K, L, dsq)) != eslOK) goto ERROR; ^~ make[1]: *** [Makefile:262: emit.o] Error 1 make[1]: *** [Makefile:262: evalues.o] Error 1 make[1]: *** [Makefile:262: generic_decoding.o] Error 1 make[1]: *** [Makefile:262: build.o] Error 1 make[1]: *** [Makefile:262: alimask.o] Error 1 make[1]: *** [Makefile:262: cachedb.o] Error 1 make: *** [Makefile:89: all] Error 2