+ CFLAGS='-fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection'
+ export CFLAGS
+ CXXFLAGS='-fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection'
+ export CXXFLAGS
+ FFLAGS='-fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection'
+ export FFLAGS
+ ./configure --host=powerpc64-suse-linux-gnu --build=powerpc64-suse-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/lib --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --disable-dependency-tracking
configure: WARNING: unrecognized options: --disable-dependency-tracking, --disable-dependency-tracking
configure: Configuring HMMER3 for your system.
checking build system type... powerpc64-suse-linux-gnu
checking host system type... powerpc64-suse-linux-gnu
checking for powerpc64-suse-linux-gnu-gcc... no
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking for a BSD-compatible install... /usr/bin/install -c
checking for powerpc64-suse-linux-gnu-ranlib... no
checking for ranlib... ranlib
checking for ar... /usr/bin/ar
checking whether ln -s works... yes
checking for C compiler vendor... gnu
checking for gcc option to accept ISO C99... none needed
checking for gcc option to accept ISO Standard C... (cached) none needed
checking for a sed that does not truncate output... /usr/bin/sed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking whether gcc is Clang... no
checking whether pthreads work with -pthread... yes
checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE
checking whether more special flags are required for pthreads... no
checking for PTHREAD_PRIO_INHERIT... yes
checking whether gcc can compile our Altivec/VMX code... yes, with -maltivec
checking whether gcc can compile our SSE code... no
configure: Activating Altivec/VMX vector DP implementation
checking compiler support --start-group... yes
checking for gzip... /usr/bin/gzip
checking for library containing clock_gettime... none required
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking endian.h usability... yes
checking endian.h presence... yes
checking for endian.h... yes
checking for inttypes.h... (cached) yes
checking for stdint.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/types.h... (cached) yes
checking netinet/in.h usability... yes
checking netinet/in.h presence... yes
checking for netinet/in.h... yes
checking sys/param.h usability... yes
checking sys/param.h presence... yes
checking for sys/param.h... yes
checking for sys/sysctl.h... yes
checking altivec.h usability... yes
checking altivec.h presence... yes
checking for altivec.h... yes
checking whether byte ordering is bigendian... yes
checking for uint8_t... yes
checking for uint16_t... yes
checking for uint32_t... yes
checking for uint64_t... yes
checking for off_t... yes
checking for __attribute__((noreturn))... yes
checking for __attribute__((format))... yes
checking for mkstemp... yes
checking for popen... yes
checking for putenv... yes
checking for strcasecmp... yes
checking for strsep... yes
checking for times... yes
checking for getpid... yes
checking for sysctl... yes
checking for sysconf... yes
checking for getcwd... yes
checking for chmod... yes
checking for stat... yes
checking for fstat... yes
checking for erfc... no
checking for library containing ntohs... none required
checking for library containing ntohl... none required
checking for library containing htons... none required
checking for library containing htonl... none required
checking for library containing socket... none required
checking for library containing inet_pton... none required
checking for _LARGEFILE_SOURCE value needed for large files... no
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating testsuite/Makefile
config.status: creating profmark/Makefile
config.status: creating src/impl_vmx/Makefile
config.status: creating documentation/Makefile
config.status: creating documentation/man/Makefile
config.status: creating documentation/userguide/Makefile
config.status: creating libdivsufsort/Makefile
config.status: creating easel/Makefile
config.status: creating easel/miniapps/Makefile
config.status: creating easel/testsuite/Makefile
config.status: creating easel/documentation/Makefile
config.status: creating documentation/userguide/titlepage.tex
config.status: creating documentation/userguide/copyright.tex
config.status: creating documentation/man/alimask.man
config.status: creating documentation/man/hmmalign.man
config.status: creating documentation/man/hmmbuild.man
config.status: creating documentation/man/hmmconvert.man
config.status: creating documentation/man/hmmemit.man
config.status: creating documentation/man/hmmer.man
config.status: creating documentation/man/hmmfetch.man
config.status: creating documentation/man/hmmlogo.man
config.status: creating documentation/man/hmmpgmd.man
config.status: creating documentation/man/hmmpress.man
config.status: creating documentation/man/hmmscan.man
config.status: creating documentation/man/hmmsearch.man
config.status: creating documentation/man/hmmsim.man
config.status: creating documentation/man/hmmstat.man
config.status: creating documentation/man/jackhmmer.man
config.status: creating documentation/man/makehmmerdb.man
config.status: creating documentation/man/nhmmer.man
config.status: creating documentation/man/nhmmscan.man
config.status: creating documentation/man/phmmer.man
config.status: creating easel/miniapps/esl-afetch.man
config.status: creating easel/miniapps/esl-alimanip.man
config.status: creating easel/miniapps/esl-alimap.man
config.status: creating easel/miniapps/esl-alimask.man
config.status: creating easel/miniapps/esl-alimerge.man
config.status: creating easel/miniapps/esl-alipid.man
config.status: creating easel/miniapps/esl-alirev.man
config.status: creating easel/miniapps/esl-alistat.man
config.status: creating easel/miniapps/esl-compalign.man
config.status: creating easel/miniapps/esl-compstruct.man
config.status: creating easel/miniapps/esl-construct.man
config.status: creating easel/miniapps/esl-histplot.man
config.status: creating easel/miniapps/esl-mask.man
config.status: creating easel/miniapps/esl-reformat.man
config.status: creating easel/miniapps/esl-selectn.man
config.status: creating easel/miniapps/esl-seqrange.man
config.status: creating easel/miniapps/esl-seqstat.man
config.status: creating easel/miniapps/esl-sfetch.man
config.status: creating easel/miniapps/esl-shuffle.man
config.status: creating easel/miniapps/esl-ssdraw.man
config.status: creating easel/miniapps/esl-translate.man
config.status: creating easel/miniapps/esl-weight.man
config.status: creating easel/decoy_config.h
config.status: creating src/p7_config.h
config.status: creating easel/esl_config.h
config.status: creating libdivsufsort/divsufsort.h
config.status: linking src/impl_vmx to src/impl
configure: WARNING: unrecognized options: --disable-dependency-tracking, --disable-dependency-tracking


HMMER configuration:
     compiler:             gcc -O3  -maltivec -pthread
     host:                 powerpc64-suse-linux-gnu
     linker:               
     libraries:              
     DP implementation:    vmx

Do 'make'  to build HMMER, and optionally:
   'make check'  to run self tests,
   'make install'  to install programs and man pages,
   '(cd easel; make install)'  to install Easel tools.

+ make 'CFLAGS=-O3 -maltivec' -j8
     SUBDIR easel
     CC easel.o
     CC esl_alloc.o
     CC esl_alphabet.o
     CC esl_arr2.o
     CC esl_arr3.o
     CC esl_buffer.o
     CC esl_cluster.o
     CC esl_composition.o
     CC esl_cpu.o
     CC esl_dirichlet.o
     CC esl_distance.o
     CC esl_dmatrix.o
     CC esl_dsqdata.o
     CC esl_exponential.o
     CC esl_fileparser.o
     CC esl_gamma.o
     CC esl_gencode.o
     CC esl_getopts.o
     CC esl_gev.o
     CC esl_gumbel.o
     CC esl_heap.o
     CC esl_histogram.o
     CC esl_hmm.o
     CC esl_huffman.o
     CC esl_hyperexp.o
     CC esl_keyhash.o
     CC esl_mem.o
     CC esl_minimizer.o
     CC esl_mixgev.o
     CC esl_mpi.o
     CC esl_msa.o
     CC esl_msacluster.o
     CC esl_msafile.o
     CC esl_msafile2.o
     CC esl_msafile_a2m.o
     CC esl_msafile_afa.o
     CC esl_msafile_clustal.o
     CC esl_msafile_phylip.o
     CC esl_msafile_psiblast.o
     CC esl_msafile_selex.o
     CC esl_msafile_stockholm.o
     CC esl_msashuffle.o
     CC esl_msaweight.o
     CC esl_normal.o
     CC esl_paml.o
     CC esl_quicksort.o
     CC esl_random.o
     CC esl_randomseq.o
     CC esl_ratematrix.o
     CC esl_recorder.o
     CC esl_red_black.o
     CC esl_regexp.o
     CC esl_rootfinder.o
     CC esl_scorematrix.o
     CC esl_sq.o
     CC esl_sqio.o
     CC esl_sqio_ascii.o
     CC esl_sqio_ncbi.o
     CC esl_ssi.o
     CC esl_stack.o
     CC esl_stats.o
     CC esl_stopwatch.o
     CC esl_stretchexp.o
     CC esl_threads.o
     CC esl_tree.o
     CC esl_vectorops.o
     CC esl_weibull.o
     CC esl_workqueue.o
     CC esl_wuss.o
     CC esl_sse.o
     CC esl_avx.o
     CC esl_avx512.o
     CC esl_neon.o
     CC esl_vmx.o
     AR libeasel.a
     SUBDIR miniapps
     GEN esl-afetch
     GEN esl-alimanip
     GEN esl-alimap
     GEN esl-alimask
     GEN esl-alimerge
     GEN esl-alipid
     GEN esl-alirev
     GEN esl-alistat
     GEN esl-compalign
     GEN esl-compstruct
     GEN esl-construct
     GEN esl-histplot
     GEN esl-mask
     GEN esl-reformat
     GEN esl-selectn
     GEN esl-seqrange
     GEN esl-seqstat
     GEN esl-sfetch
     GEN esl-shuffle
     GEN esl-ssdraw
     GEN esl-translate
     GEN esl-weight
     SUBDIR libdivsufsort
     CC divsufsort.o
     AR libdivsufsort.a
     SUBDIR src
     CC alimask.o
     CC build.o
     CC cachedb.o
     CC emit.o
     CC errors.o
     CC evalues.o
     CC eweight.o
     CC generic_decoding.o
     CC generic_fwdback.o
     CC generic_fwdback_chk.o
     CC generic_fwdback_banded.o
     CC generic_null2.o
     CC generic_msv.o
     CC generic_optacc.o
     CC generic_stotrace.o
     CC generic_viterbi.o
     CC generic_vtrace.o
     CC h2_io.o
     CC heatmap.o
     CC hmmlogo.o
     CC hmmdmstr.o
     CC hmmdwrkr.o
     CC hmmdutils.o
     CC hmmer.o
     CC logsum.o
     CC modelconfig.o
     CC modelstats.o
     CC mpisupport.o
     CC seqmodel.o
     CC tracealign.o
     CC p7_alidisplay.o
     CC p7_bg.o
     CC p7_builder.o
     CC p7_domaindef.o
     CC p7_gbands.o
     CC p7_gmx.o
     CC p7_gmxb.o
     CC p7_gmxchk.o
     CC p7_hmm.o
     CC p7_hmmcache.o
     CC p7_hmmfile.o
     CC p7_hmmwindow.o
     CC p7_pipeline.o
     CC p7_prior.o
     CC p7_profile.o
     CC p7_spensemble.o
     CC p7_tophits.o
     CC p7_trace.o
     CC p7_scoredata.o
     CC hmmpgmd2msa.o
     CC fm_alphabet.o
     CC fm_general.o
     CC fm_sse.o
     CC fm_ssv.o
     CC hmmalign.o
     CC hmmbuild.o
     CC hmmconvert.o
     CC hmmemit.o
     CC hmmfetch.o
     CC hmmpgmd.o
     CC hmmpress.o
     CC hmmscan.o
     CC hmmsearch.o
     CC hmmsim.o
     CC hmmstat.o
     CC jackhmmer.o
     CC phmmer.o
     CC nhmmer.o
     CC nhmmscan.o
nhmmscan.c: In function 'serial_loop':
nhmmscan.c:653:9: warning: implicit declaration of function 'p7_oprofile_UpdateVitEmissionScores'; did you mean 'p7_oprofile_UpdateFwdEmissionScores'? [-Wimplicit-function-declaration]
         p7_oprofile_UpdateVitEmissionScores(om, info->bg, info->fwd_emissions, info->scores);
         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
         p7_oprofile_UpdateFwdEmissionScores
nhmmscan.c:654:9: warning: implicit declaration of function 'p7_oprofile_UpdateMSVEmissionScores'; did you mean 'p7_oprofile_UpdateFwdEmissionScores'? [-Wimplicit-function-declaration]
         p7_oprofile_UpdateMSVEmissionScores(om, info->bg, info->fwd_emissions, info->scores);
         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
         p7_oprofile_UpdateFwdEmissionScores
     CC makehmmerdb.o
     CC hmmc2.o
     CC hmmerfm-exactmatch.o
     AR libhmmer-src.stamp
     SUBDIR impl_vmx
     CC decoding.o
     CC fwdback.o
     CC io.o
     CC msvfilter.o
     CC null2.o
     CC optacc.o
     CC stotrace.o
     CC vitfilter.o
     CC p7_omx.o
     CC p7_oprofile.o
     CC mpi.o
     AR libhmmer-impl.stamp
     GEN alimask
     GEN hmmalign
     GEN hmmbuild
     GEN hmmconvert
     GEN hmmemit
     GEN hmmfetch
     GEN hmmlogo
     GEN hmmpgmd
     GEN hmmpress
     GEN hmmscan
     GEN hmmsearch
     GEN hmmsim
../easel/libeasel.a(esl_threads.o): In function `esl_threads_AddThread':
esl_threads.c:(.text+0x278): undefined reference to `pthread_create'
../easel/libeasel.a(esl_threads.o): In function `esl_threads_WaitForFinish':
esl_threads.c:(.text+0x620): undefined reference to `pthread_join'
collect2: error: ld returned 1 exit status
make[1]: *** [Makefile:259: hmmbuild] Error 1
make[1]: *** Waiting for unfinished jobs....
./libhmmer.a(hmmdmstr.o): In function `client_comm_thread':
hmmdmstr.c:(.text+0x154): undefined reference to `pthread_create'
./libhmmer.a(hmmdmstr.o): In function `worker_comm_thread':
hmmdmstr.c:(.text+0x2f4): undefined reference to `pthread_create'
./libhmmer.a(hmmdmstr.o): In function `clientside_thread':
hmmdmstr.c:(.text+0x1b0c): undefined reference to `pthread_detach'
./libhmmer.a(hmmdmstr.o): In function `workerside_thread':
hmmdmstr.c:(.text+0x2a8c): undefined reference to `pthread_detach'
./libhmmer.a(hmmdmstr.o): In function `master_process':
hmmdmstr.c:(.text+0x4588): undefined reference to `pthread_create'
hmmdmstr.c:(.text+0x4bf8): undefined reference to `pthread_create'
../easel/libeasel.a(esl_threads.o): In function `esl_threads_AddThread':
esl_threads.c:(.text+0x278): undefined reference to `pthread_create'
../easel/libeasel.a(esl_threads.o): In function `esl_threads_WaitForFinish':
esl_threads.c:(.text+0x620): undefined reference to `pthread_join'
collect2: error: ld returned 1 exit status
make[1]: *** [Makefile:259: hmmpgmd] Error 1
../easel/libeasel.a(esl_threads.o): In function `esl_threads_AddThread':
esl_threads.c:(.text+0x278): undefined reference to `pthread_create'
../easel/libeasel.a(esl_threads.o): In function `esl_threads_WaitForFinish':
esl_threads.c:(.text+0x620): undefined reference to `pthread_join'
collect2: error: ld returned 1 exit status
make[1]: *** [Makefile:259: hmmscan] Error 1
../easel/libeasel.a(esl_threads.o): In function `esl_threads_AddThread':
esl_threads.c:(.text+0x278): undefined reference to `pthread_create'
../easel/libeasel.a(esl_threads.o): In function `esl_threads_WaitForFinish':
esl_threads.c:(.text+0x620): undefined reference to `pthread_join'
collect2: error: ld returned 1 exit status
make[1]: *** [Makefile:259: hmmsearch] Error 1
make: *** [Makefile:89: all] Error 2