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| Brief installation instructions | |
| Infernal @INFERNAL_VERSION@; @INFERNAL_DATE@ | |
| ------------------------------------------------------------- | |
| These are quick installation instructions. For complete documentation, | |
| including customization and troubleshooting, please see the | |
| Installation chapter in the Infernal User's Guide (Userguide.pdf). | |
| Starting from a source distribution, infernal-@INFERNAL_VERSION@.tar.gz: | |
| uncompress: uncompress infernal-@INFERNAL_VERSION@.tar.gz | |
| unpack: tar xf infernal-@INFERNAL_VERSION@.tar | |
| move into new directory: cd infernal-@INFERNAL_VERSION@ | |
| configure: ./configure | |
| build: make | |
| automated tests: make check | |
| automated install: make install | |
| Infernal is designed to run on POSIX-compatible platforms, including | |
| UNIX, Linux and MacOS/X. The POSIX standard essentially includes all | |
| operating systems except Microsoft Windows. We have tested most | |
| extensively on Linux and on MacOS/X, because these are the machines we | |
| develop on. | |
| Infernal depends on vector parallelization methods that are supported | |
| on most modern processors. Infernal requires either an x86-compatible | |
| (IA32, IA64, or Intel64) processor that supports the SSE2 vector | |
| instruction set, or a PowerPC processor that supports the Altivec/VMX | |
| instruction set. If your platform does not support one of these vector | |
| instruction sets, you won’t be able to install and run Infernal 1.1 on | |
| it. | |
| ------------------------------------------------------------- | |
| Starting from a Git Repo: | |
| If you have cloned the Infernal Git repository, there's | |
| some additional stuff you need to do one-time-only in your new working | |
| directory. | |
| First you need to clone easel and hmmer too: | |
| cd infernal | |
| git clone https://github.com/EddyRivasLab/easel.git | |
| git clone https://github.com/EddyRivasLab/hmmer.git | |
| And switch to the h3-master branch: | |
| cd hmmer | |
| git checkout h3-master | |
| You may want to switch to the 'develop' branch of infernal, the | |
| 'h3-develop' branch of hmmer and the 'develop' branch of easel if you | |
| want the in-development code. | |
| And finally: | |
| ln -s easel/aclocal.m4 aclocal.m4 | |
| (cd hmmer; ln -s ../easel/aclocal.m4 aclocal.m4;) | |
| autoconf | |
| (cd easel; autoconf; cd ../hmmer; autoconf;) | |
| ------------------------------------------------------------- | |
| The Infernal development team | |
| github.com/EddyRivasLab/infernal/ | |
| http://eddylab.org/infernal | |