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| Infernal - inference of RNA secondary structure alignments | |
| http://eddylab.org/infernal/ | |
| Version @INFERNAL_VERSION@; @INFERNAL_DATE@ | |
| @INFERNAL_COPYRIGHT@ | |
| ------------------------------------------------------------------ | |
| Infernal is an implementation of covariance models (CMs), which are | |
| statistical models of RNA secondary structure and sequence consensus. | |
| You give Infernal a multiple sequence alignment of a conserved | |
| structural RNA family, annotated with the consensus secondary | |
| structure. The "cmbuild" program builds a statistical profile of your | |
| alignment. That CM can be used as a query in a database search to find | |
| more homologs of your RNAs (the "cmsearch" program). You can also use | |
| a CM of a representative alignment of your sequence family to create a | |
| larger consensus alignment of any number of RNAs (the "cmalign" | |
| program). Infernal is the software engine underlying the Rfam RNA | |
| database (http://rfam.xfam.org/). | |
| Other files to read in the top-level source directory: | |
| INSTALL Brief installation instructions. | |
| Userguide.pdf The Infernal User's Guide. | |
| LICENSE copyright and license information | |
| To get started after installation, see the Tutorial section in the | |
| Infernal User's Guide (Userguide.pdf). | |
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| The Infernal development team | |
| github.com/EddyRivasLab/infernal/ | |
| http://eddylab.org/infernal |