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README
Infernal - inference of RNA secondary structure alignments http://infernal.janelia.org/ Version @INFERNAL_VERSION@; @INFERNAL_DATE@ @INFERNAL_COPYRIGHT@ ------------------------------------------------------------------ Infernal is an implementation of covariance models (CMs), which are statistical models of RNA secondary structure and sequence consensus. You give Infernal a multiple sequence alignment of a conserved structural RNA family, annotated with the consensus secondary structure. The "cmbuild" program builds a statistical profile of your alignment. That CM can be used as a query in a database search to find more homologs of your RNAs (the "cmsearch" program). You can also use a CM of a representative alignment of your sequence family to create a larger consensus alignment of any number of RNAs (the "cmalign" program). Infernal is the software engine underlying the Rfam RNA database (http://rfam.janelia.org). Other files to read in the top-level source directory: INSTALL Brief installation instructions. Userguide.pdf The Infernal User's Guide. COPYRIGHT Copyright and license information. LICENSE The GNU General Public License (GPLv3). To get started after installation, see the Tutorial section in the Infernal User's Guide (Userguide.pdf). ------------------------------------------------------------------- The Infernal development team HHMI Janelia Farm Research Campus http://infernal.janelia.org/