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00README
100k-4.fa
10k-4.fa
10k-Vault.fa
10k-tRNA.fa
1k-4.fa
1k-Vault.fa
1k-snR75.fa
1k-tRNA.fa
1k.fa
2.list
2accn.list
2name.list
3.4.12.rf.stk
3trnas.embl
3trnas.gb
4.1p0.c.cm
4.1p0.cm
4.c.cm
4.sto
5.c.cm
5.claninfo
Makefile.in
PK-HAV.sto
Plant_SRP.1p0.c.cm
Plant_SRP.1p0.cm
Plant_SRP.c.cm
Plant_SRP.sto
RIBOSUM85-60.mat
RNaseP.sto
Rfam.12.1.clanin
Vault.1p0.c.cm
Vault.1p0.cm
Vault.c.cm
Vault.sto
at25.null
at4.null
bug-i1.pl
bug-i11.pl
bug-i12.pl
bug-i13.pl
bug-i14.fa
bug-i14.pl
bug-i14.sto
bug-i15.fa
bug-i15.pl
bug-i15.sto
bug-i2.fa
bug-i2.sto
bug-i28.cm
bug-i28.fa
bug-i28.pl
bug-i29.cm
bug-i29.pl
bug-i30.pl
bug-i31.cm
bug-i31.fa
bug-i31.pl
bug-i32.pl
bug-i33.cm
bug-i33.pl
bug-i34.cm
bug-i34.pl
bug-i36.cm
bug-i36.pl
bug-i37.cm
bug-i37.pl
bug-i38.pl
bug-i39.pl
bug-i43.cm
bug-i43.fa
bug-i43.pl
bug-i44.pl
dev_testsuite.sqc
emitted-3pkhavs.fa
emitted-4.fa
emitted-5.fa
emitted-Vault.fa
emitted-snR75.fa
emitted-tRNA.fa
ffs-ecoli.fa
ffs-frag.fa
i1.pm
itest1-cmalign-mapali.pl
itest2-duplicate-names.pl
itest3-msa-integrity.pl
itest4-stdin.pl
itest5-pipeline.pl
itest6-sensitivity.pl
itest7-trunc.pl
itest8-glist.pl
itest9-overlaps.pl
mito-ascaris.fa
mito-ascaris.gb
plus1.prior
rnaseP-bsu.fa
rnaseP-eubact.c.cm
rnaseP-eubact.sto
rnaseP-frag.fa
se.1.sto
se.dbl.sto
se.fa
se.noss.sto
se.rf.sto
se.sto
snR75.1p0.c.cm
snR75.1p0.cm
snR75.3.fa
snR75.c.cm
snR75.sto
srp-euk.c.cm
srp-euk.sto
ssu.sto
tRNA-Sec.c.cm
tRNA.1p0.c.cm
tRNA.1p0.cm
tRNA.c.cm
tRNA.sto
tRNA1415G.c.cm
tRNA1415G.sto
test.hprior
testsuite.sqc
tremitted-Plant_SRP.fa
tremitted-Vault.fa
trna-2.sto
trna.list
trna.xmask
vault.fa
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