Dioscuri

Dioscuri is a Python package for working with Gemini WorkList (gwl) files and objects.

A Gemini worklist file is a text file that contains pipetting instructions for the Tecan Freedom EVO robots. Dioscuri uses the Freedom EVOware (v2.7) software's specification of the gwl format.

Dioscuri is a name for Castor and Pollux, the twins who were transformed into the Gemini constellation in Greek mythology.

Install

pip install dioscuri

Usage

import dioscuri

aspirate = dioscuri.Pipette(operation="Aspirate",
                            rack_label="Source1",
                            rack_type="4ti-0960/B on raised carrier",
                            position="3",
                            volume="50")
aspirate.to_string()

dispense = dioscuri.Pipette(operation="D",
                            rack_label="Destination",
                            rack_type="4ti-0960/B on CPAC",
                            position="1", 
                            volume="50")

wash = dioscuri.WashTipOrReplaceDITI()

worklist = dioscuri.GeminiWorkList(name="my_worklist",
                                   records=[aspirate, dispense, wash])
worklist.records_to_string()

print(worklist.records_to_string())
# A;Source1;;4ti-0960/B on raised carrier;3;;50;;;;
# D;Destination;;4ti-0960/B on CPAC;1;;50;;;;
# W;

The worklist can be saved in a text file:

worklist.records_to_file("picklist.gwl")

A gwl file can also be read into a worklist:

worklist = dioscuri.read_gwl("picklist.gwl")

Versioning

Dioscuri uses the semantic versioning scheme.

License = MIT

Dioscuri is free software, which means the users have the freedom to run, copy, distribute, study, change and improve the software.

Dioscuri was written at the Edinburgh Genome Foundry by Peter Vegh and is released under the MIT license.