Collaboration_Tom_Beneke LeishiGuideRanking Function

Author

Elisabeth Meiser

Description

The LeishiGuideRanking function is designed to process CSV files and perform data ranking based on specified criteria. It can be used to load CSV data, calculate various scoring parameters, and rank the data. The ranked data can be saved as a CSV file for further analysis.

It was written to sort and rank Guide DNA for the following publication:

License

This project is licensed under the MIT License - see the LICENSE file for details.

Features

• Loads CSV data files into a MATLAB table.
• Calculates various scoring parameters for the data.
• Ranks the data based on the calculated scores.
• Allows ranking by GeneID if desired.
• Saves the final sorted data as a CSV file for easy access.

Usage

To use this function, follow these steps:

1. Provide the path to the folder containing TOMS CSV data files using path_in.
2. Specify the path where the sorted data will be saved using path_out.
3. Provide the name of the input CSV data file using filename.
4. Set the rankByGeneID flag to true if you want to rank data by GeneID.

Example:

LeishiGuideRanking('/path/to/input_data', '/path/to/output_data', 'data_file.csv', true);