~/Documents/Process/DataProvenance -> rm -rf RDataTracker-vagrant ~/Documents/Process/DataProvenance -> ls -a RDataTracker-vagrant ls: RDataTracker-vagrant: No such file or directory ~/Documents/Process/DataProvenance -> git clone https://github.com/End-to-end-provenance/RDataTracker-vagrant.git Cloning into 'RDataTracker-vagrant'... remote: Counting objects: 62, done. remote: Compressing objects: 100% (6/6), done. remote: Total 62 (delta 0), reused 0 (delta 0), pack-reused 56 Unpacking objects: 100% (62/62), done. Checking connectivity... done. ~/Documents/Process/DataProvenance -> cd RDataTracker-vagrant/ /Users/blerner/Documents/Process/DataProvenance/RDataTracker-vagrant ~/Documents/Process/DataProvenance/RDataTracker-vagrant -> vagrant up Bringing machine 'default' up with 'virtualbox' provider... ==> default: Importing base box 'boxcutter/ubuntu1604-desktop'... ==> default: Matching MAC address for NAT networking... ==> default: Checking if box 'boxcutter/ubuntu1604-desktop' is up to date... ==> default: Setting the name of the VM: RDataTracker-vagrant_default_1467823808449_77225 ==> default: Clearing any previously set network interfaces... ==> default: Preparing network interfaces based on configuration... default: Adapter 1: nat ==> default: Forwarding ports... default: 22 (guest) => 2222 (host) (adapter 1) ==> default: Running 'pre-boot' VM customizations... ==> default: Booting VM... ==> default: Waiting for machine to boot. This may take a few minutes... default: SSH address: 127.0.0.1:2222 default: SSH username: vagrant default: SSH auth method: private key default: Warning: Remote connection disconnect. Retrying... default: default: Vagrant insecure key detected. Vagrant will automatically replace default: this with a newly generated keypair for better security. default: default: Inserting generated public key within guest... default: Removing insecure key from the guest if it's present... default: Key inserted! Disconnecting and reconnecting using new SSH key... ==> default: Machine booted and ready! ==> default: Checking for guest additions in VM... ==> default: Mounting shared folders... default: /shared => /Users/blerner/Documents/Process/DataProvenance/RDataTracker-vagrant/shared default: /vagrant => /Users/blerner/Documents/Process/DataProvenance/RDataTracker-vagrant ==> default: Running provisioner: shell... default: Running: inline script ==> default: mesg: ==> default: ttyname failed ==> default: : ==> default: Inappropriate ioctl for device ==> default: gpg: ==> default: directory `/root/.gnupg' created ==> default: gpg: ==> default: new configuration file `/root/.gnupg/gpg.conf' created ==> default: gpg: ==> default: WARNING: options in `/root/.gnupg/gpg.conf' are not yet active during this run ==> default: gpg: ==> default: keyring `/root/.gnupg/secring.gpg' created ==> default: gpg: ==> default: keyring `/root/.gnupg/pubring.gpg' created ==> default: gpg: ==> default: requesting key E084DAB9 from hkp server keyserver.ubuntu.com ==> default: gpg: ==> default: /root/.gnupg/trustdb.gpg: trustdb created ==> default: gpg: ==> default: key E084DAB9: public key "Michael Rutter " imported ==> default: gpg: ==> default: Total number processed: 1 ==> default: gpg: ==> default: imported: 1 ==> default: (RSA: 1) ==> default: OK ==> default: Hit:1 http://us.archive.ubuntu.com/ubuntu xenial InRelease ==> default: Get:2 http://us.archive.ubuntu.com/ubuntu xenial-updates InRelease [94.5 kB] ==> default: Get:3 http://security.ubuntu.com/ubuntu xenial-security InRelease [94.5 kB] ==> default: Ign:4 http://cran.rstudio.com/bin/linux/ubuntu trusty/ InRelease ==> default: Get:5 http://security.ubuntu.com/ubuntu xenial-security/main amd64 Packages [116 kB] ==> default: Get:6 http://security.ubuntu.com/ubuntu xenial-security/main i386 Packages [113 kB] ==> default: Get:7 http://cran.rstudio.com/bin/linux/ubuntu trusty/ Release [3,066 B] ==> default: Get:8 http://cran.rstudio.com/bin/linux/ubuntu trusty/ Release.gpg [473 B] ==> default: Hit:9 http://us.archive.ubuntu.com/ubuntu xenial-backports InRelease ==> default: Get:10 http://security.ubuntu.com/ubuntu xenial-security/main Translation-en [44.2 kB] ==> default: Get:11 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 DEP-11 Metadata [733 kB] ==> default: Get:12 http://cran.rstudio.com/bin/linux/ubuntu trusty/ Packages [115 kB] ==> default: Get:13 http://security.ubuntu.com/ubuntu xenial-security/main amd64 DEP-11 Metadata [44.7 kB] ==> default: Get:14 http://security.ubuntu.com/ubuntu xenial-security/main DEP-11 64x64 Icons [50.8 kB] ==> default: Get:15 http://security.ubuntu.com/ubuntu xenial-security/restricted amd64 DEP-11 Metadata [158 B] ==> default: Get:16 http://security.ubuntu.com/ubuntu xenial-security/universe amd64 Packages [33.1 kB] ==> default: Get:17 http://security.ubuntu.com/ubuntu xenial-security/universe i386 Packages [33.0 kB] ==> default: Get:18 http://us.archive.ubuntu.com/ubuntu xenial/main DEP-11 64x64 Icons [409 kB] ==> default: Get:19 http://security.ubuntu.com/ubuntu xenial-security/universe Translation-en [19.9 kB] ==> default: Get:20 http://security.ubuntu.com/ubuntu xenial-security/universe amd64 DEP-11 Metadata [2,329 B] ==> default: Get:21 http://security.ubuntu.com/ubuntu xenial-security/universe DEP-11 64x64 Icons [4,102 B] ==> default: Get:22 http://us.archive.ubuntu.com/ubuntu xenial/restricted amd64 DEP-11 Metadata [186 B] ==> default: Get:23 http://us.archive.ubuntu.com/ubuntu xenial/universe amd64 DEP-11 Metadata [3,410 kB] ==> default: Get:24 http://security.ubuntu.com/ubuntu xenial-security/multiverse amd64 Packages [1,176 B] ==> default: Get:25 http://security.ubuntu.com/ubuntu xenial-security/multiverse i386 Packages [1,344 B] ==> default: Get:26 http://security.ubuntu.com/ubuntu xenial-security/multiverse amd64 DEP-11 Metadata [200 B] ==> default: Get:27 http://us.archive.ubuntu.com/ubuntu xenial/universe DEP-11 64x64 Icons [7,448 kB] ==> default: Get:28 http://us.archive.ubuntu.com/ubuntu xenial/multiverse amd64 DEP-11 Metadata [63.8 kB] ==> default: Get:29 http://us.archive.ubuntu.com/ubuntu xenial/multiverse DEP-11 64x64 Icons [230 kB] ==> default: Get:30 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 Packages [244 kB] ==> default: Get:31 http://us.archive.ubuntu.com/ubuntu xenial-updates/main i386 Packages [240 kB] ==> default: Get:32 http://us.archive.ubuntu.com/ubuntu xenial-updates/main Translation-en [96.7 kB] ==> default: Get:33 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 DEP-11 Metadata [186 kB] ==> default: Get:34 http://us.archive.ubuntu.com/ubuntu xenial-updates/main DEP-11 64x64 Icons [150 kB] ==> default: Get:35 http://us.archive.ubuntu.com/ubuntu xenial-updates/restricted amd64 DEP-11 Metadata [157 B] ==> default: Get:36 http://us.archive.ubuntu.com/ubuntu xenial-updates/universe amd64 Packages [154 kB] ==> default: Get:37 http://us.archive.ubuntu.com/ubuntu xenial-updates/universe i386 Packages [151 kB] ==> default: Get:38 http://us.archive.ubuntu.com/ubuntu xenial-updates/universe Translation-en [75.7 kB] ==> default: Get:39 http://us.archive.ubuntu.com/ubuntu xenial-updates/universe amd64 DEP-11 Metadata [69.3 kB] ==> default: Get:40 http://us.archive.ubuntu.com/ubuntu xenial-updates/universe DEP-11 64x64 Icons [71.0 kB] ==> default: Get:41 http://us.archive.ubuntu.com/ubuntu xenial-updates/multiverse amd64 Packages [1,176 B] ==> default: Get:42 http://us.archive.ubuntu.com/ubuntu xenial-updates/multiverse i386 Packages [1,344 B] ==> default: Get:43 http://us.archive.ubuntu.com/ubuntu xenial-updates/multiverse amd64 DEP-11 Metadata [158 B] ==> default: Get:44 http://us.archive.ubuntu.com/ubuntu xenial-backports/main amd64 DEP-11 Metadata [197 B] ==> default: Get:45 http://us.archive.ubuntu.com/ubuntu xenial-backports/restricted amd64 DEP-11 Metadata [194 B] ==> default: Get:46 http://us.archive.ubuntu.com/ubuntu xenial-backports/universe amd64 DEP-11 Metadata [194 B] ==> default: Get:47 http://us.archive.ubuntu.com/ubuntu xenial-backports/multiverse amd64 DEP-11 Metadata [194 B] ==> default: Fetched 14.5 MB in 31s (467 kB/s) ==> default: Reading package lists... ==> default: Reading package lists... ==> default: Building dependency tree... ==> default: Reading state information... ==> default: Calculating upgrade... ==> default: The following NEW packages will be installed: ==> default: linux-headers-4.4.0-28 linux-headers-4.4.0-28-generic ==> default: linux-image-4.4.0-28-generic linux-image-extra-4.4.0-28-generic ==> default: The following packages will be upgraded: ==> default: accountsservice apt apt-transport-https apt-utils base-files bash ==> default: bash-completion bind9-host bsdutils command-not-found command-not-found-data ==> default: dh-python distro-info-data dmidecode dnsmasq-base dnsutils dosfstools dpkg ==> default: file-roller firefox fonts-opensymbol fwupd gdb gdbserver glib-networking ==> default: glib-networking-common glib-networking-services gnome-software ==> default: gnome-software-common grep indicator-bluetooth init init-system-helpers ==> default: initramfs-tools initramfs-tools-bin initramfs-tools-core ==> default: language-selector-common language-selector-gnome libaccountsservice0 ==> default: libappstream-glib8 libapt-inst2.0 libapt-pkg5.0 libbind9-140 libblkid1 ==> default: libboost-date-time1.58.0 libboost-filesystem1.58.0 libboost-iostreams1.58.0 ==> default: libboost-system1.58.0 libdfu1 libdns-export162 libdns162 libdrm2 libexpat1 ==> default: libfdisk1 libfwupd1 libglib2.0-0 libglib2.0-bin libglib2.0-data ==> default: libgnutls-openssl27 libgnutls30 libimobiledevice6 libisc-export160 libisc160 ==> default: libisccc140 libisccfg140 libldap-2.4-2 liblwres141 libmetacity-private3a ==> default: libmount1 libmysqlclient20 libnm-gtk-common libnm-gtk0 libnma-common libnma0 ==> default: liboxideqt-qmlplugin liboxideqtcore0 liboxideqtquick0 libpam-systemd ==> default: libplymouth4 libreoffice-avmedia-backend-gstreamer libreoffice-base-core ==> default: libreoffice-calc libreoffice-common libreoffice-core libreoffice-draw ==> default: libreoffice-gnome libreoffice-gtk libreoffice-impress libreoffice-math ==> default: libreoffice-ogltrans libreoffice-pdfimport libreoffice-style-breeze ==> default: libreoffice-style-elementary libreoffice-style-galaxy libreoffice-writer ==> default: libsmartcols1 libssl1.0.0 libsystemd0 libtasn1-6 libudev1 ==> default: libunity-control-center1 libupower-glib3 libusbmuxd4 libuuid1 libwhoopsie0 ==> default: libxml2 light-themes linux-firmware linux-generic linux-headers-generic ==> default: linux-image-generic linux-libc-dev lsb-base lsb-release lshw metacity-common ==> default: mount mtr-tiny mysql-common network-manager-gnome openssl oxideqt-codecs ==> default: printer-driver-brlaser python3-commandnotfound python3-software-properties ==> default: python3-uno sbsigntool shared-mime-info snapd software-properties-common ==> default: software-properties-gtk sudo suru-icon-theme systemd systemd-sysv tzdata ==> default: ubuntu-artwork ubuntu-docs ubuntu-mobile-icons ubuntu-mono ubuntu-software ==> default: udev unity-control-center unity-control-center-faces uno-libs3 upower ure ==> default: util-linux uuid-runtime vim-common vim-tiny wget whoopsie ==> default: 153 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. ==> default: Need to get 299 MB of archives. ==> default: After this operation, 304 MB of additional disk space will be used. ==> default: Get:1 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 base-files amd64 9.4ubuntu4.1 [68.4 kB] ==> default: Get:2 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 bash amd64 4.3-14ubuntu1.1 [583 kB] ==> default: Get:3 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 bsdutils amd64 1:2.27.1-6ubuntu3.1 [51.8 kB] ==> default: Get:4 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 dpkg amd64 1.18.4ubuntu1.1 [2,083 kB] ==> default: Get:5 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 grep amd64 2.25-1~16.04.1 [153 kB] ==> default: Get:6 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 init-system-helpers all 1.29ubuntu2 [32.2 kB] ==> default: Get:7 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 init amd64 1.29ubuntu2 [4,520 B] ==> default: Get:8 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libudev1 amd64 229-4ubuntu6 [57.9 kB] ==> default: Get:9 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 udev amd64 229-4ubuntu6 [990 kB] ==> default: Get:10 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpam-systemd amd64 229-4ubuntu6 [115 kB] ==> default: Get:11 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libsystemd0 amd64 229-4ubuntu6 [208 kB] ==> default: Get:12 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 systemd amd64 229-4ubuntu6 [3,642 kB] ==> default: Get:13 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libuuid1 amd64 2.27.1-6ubuntu3.1 [15.6 kB] ==> default: Get:14 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libblkid1 amd64 2.27.1-6ubuntu3.1 [107 kB] ==> default: Get:15 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 initramfs-tools all 0.122ubuntu8.1 [8,602 B] ==> default: Get:16 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 initramfs-tools-core all 0.122ubuntu8.1 [42.2 kB] ==> default: Get:17 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 initramfs-tools-bin amd64 0.122ubuntu8.1 [10.8 kB] ==> default: Get:18 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 systemd-sysv amd64 229-4ubuntu6 [15.2 kB] ==> default: Get:19 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libmount1 amd64 2.27.1-6ubuntu3.1 [114 kB] ==> default: Get:20 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 lsb-base all 9.20160110ubuntu0.1 [13.7 kB] ==> default: Get:21 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 util-linux amd64 2.27.1-6ubuntu3.1 [848 kB] ==> default: Get:22 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 mount amd64 2.27.1-6ubuntu3.1 [121 kB] ==> default: Get:23 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libapt-pkg5.0 amd64 1.2.12~ubuntu16.04.1 [696 kB] ==> default: Get:24 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libapt-inst2.0 amd64 1.2.12~ubuntu16.04.1 [55.4 kB] ==> default: Get:25 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 apt amd64 1.2.12~ubuntu16.04.1 [1,038 kB] ==> default: Get:26 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 apt-utils amd64 1.2.12~ubuntu16.04.1 [196 kB] ==> default: Get:27 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 bash-completion all 1:2.1-4.2ubuntu1.1 [152 kB] ==> default: Get:28 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 language-selector-gnome all 0.165.3 [18.7 kB] ==> default: Get:29 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libnm-gtk0 amd64 1.2.0-0ubuntu0.16.04.3 [70.0 kB] ==> default: Get:30 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libnm-gtk-common all 1.2.0-0ubuntu0.16.04.3 [5,344 B] ==> default: Get:31 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libunity-control-center1 amd64 15.04.0+16.04.20160413-0ubuntu3 [80.9 kB] ==> default: Get:32 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libupower-glib3 amd64 0.99.4-2ubuntu0.2 [41.7 kB] ==> default: Get:33 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libxml2 amd64 2.9.3+dfsg1-1ubuntu0.1 [696 kB] ==> default: Get:34 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 indicator-bluetooth amd64 0.0.6+16.04.20160526-0ubuntu1 [31.9 kB] ==> default: Get:35 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 unity-control-center amd64 15.04.0+16.04.20160413-0ubuntu3 [835 kB] ==> default: Get:36 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libglib2.0-data all 2.48.1-1~ubuntu16.04.1 [132 kB] ==> default: Get:37 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libglib2.0-bin amd64 2.48.1-1~ubuntu16.04.1 [39.4 kB] ==> default: Get:38 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libglib2.0-0 amd64 2.48.1-1~ubuntu16.04.1 [1,118 kB] ==> default: Get:39 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 glib-networking-common all 2.48.2-1~ubuntu16.04.1 [10.9 kB] ==> default: Get:40 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 glib-networking amd64 2.48.2-1~ubuntu16.04.1 [43.7 kB] ==> default: Get:41 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 glib-networking-services amd64 2.48.2-1~ubuntu16.04.1 [16.0 kB] ==> default: Get:42 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgnutls-openssl27 amd64 3.4.10-4ubuntu1.1 [21.9 kB] ==> default: Get:43 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libtasn1-6 amd64 4.7-3ubuntu0.16.04.1 [43.2 kB] ==> default: Get:44 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgnutls30 amd64 3.4.10-4ubuntu1.1 [547 kB] ==> default: Get:45 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 accountsservice amd64 0.6.40-2ubuntu11.1 [56.2 kB] ==> default: Get:46 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libaccountsservice0 amd64 0.6.40-2ubuntu11.1 [67.0 kB] ==> default: Get:47 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 language-selector-common all 0.165.3 [214 kB] ==> default: Get:48 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 uuid-runtime amd64 2.27.1-6ubuntu3.1 [26.4 kB] ==> default: Get:49 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libreoffice-calc amd64 1:5.1.4-0ubuntu1 [6,445 kB] ==> default: Get:50 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libreoffice-gnome amd64 1:5.1.4-0ubuntu1 [60.5 kB] ==> default: Get:51 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libreoffice-gtk amd64 1:5.1.4-0ubuntu1 [206 kB] ==> default: Get:52 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libreoffice-writer amd64 1:5.1.4-0ubuntu1 [7,576 kB] ==> default: Get:53 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 uno-libs3 amd64 5.1.4-0ubuntu1 [704 kB] ==> default: Get:54 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libreoffice-ogltrans amd64 1:5.1.4-0ubuntu1 [73.4 kB] ==> default: Get:55 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 ure amd64 5.1.4-0ubuntu1 [1,536 kB] ==> default: Get:56 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libreoffice-style-breeze all 1:5.1.4-0ubuntu1 [470 kB] ==> default: Get:57 http://us.archive.ubuntu.com/ubuntu xenial-updates/universe amd64 libreoffice-style-elementary all 1:5.1.4-0ubuntu1 [1,404 kB] ==> default: Get:58 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libreoffice-style-galaxy all 1:5.1.4-0ubuntu1 [1,517 kB] ==> default: Get:59 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libreoffice-common all 1:5.1.4-0ubuntu1 [22.3 MB] ==> default: Get:60 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libreoffice-pdfimport amd64 1:5.1.4-0ubuntu1 [182 kB] ==> default: Get:61 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 python3-uno amd64 1:5.1.4-0ubuntu1 [137 kB] ==> default: Get:62 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libreoffice-base-core amd64 1:5.1.4-0ubuntu1 [716 kB] ==> default: Get:63 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libreoffice-math amd64 1:5.1.4-0ubuntu1 [374 kB] ==> default: Get:64 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libreoffice-avmedia-backend-gstreamer amd64 1:5.1.4-0ubuntu1 [24.2 kB] ==> default: Get:65 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libreoffice-draw amd64 1:5.1.4-0ubuntu1 [2,408 kB] ==> default: Get:66 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libreoffice-impress amd64 1:5.1.4-0ubuntu1 [970 kB] ==> default: Get:67 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libreoffice-core amd64 1:5.1.4-0ubuntu1 [28.2 MB] ==> default: Get:68 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 fonts-opensymbol all 2:102.7+LibO5.1.4-0ubuntu1 [104 kB] ==> default: Get:69 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libexpat1 amd64 2.1.0-7ubuntu0.16.04.2 [71.3 kB] ==> default: Get:70 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libldap-2.4-2 amd64 2.4.42+dfsg-2ubuntu3.1 [161 kB] ==> default: Get:71 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 whoopsie amd64 0.2.52.1 [22.6 kB] ==> default: Get:72 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libwhoopsie0 amd64 0.2.52.1 [9,892 B] ==> default: Get:73 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libfdisk1 amd64 2.27.1-6ubuntu3.1 [138 kB] ==> default: Get:74 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libsmartcols1 amd64 2.27.1-6ubuntu3.1 [63.3 kB] ==> default: Get:75 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 tzdata all 2016f-0ubuntu0.16.04 [168 kB] ==> default: Get:76 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 dh-python all 2.20151103ubuntu1.1 [74.1 kB] ==> default: Get:77 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 distro-info-data all 0.28ubuntu0.1 [3,946 B] ==> default: Get:78 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libisc-export160 amd64 1:9.10.3.dfsg.P4-8ubuntu1 [152 kB] ==> default: Get:79 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libdns-export162 amd64 1:9.10.3.dfsg.P4-8ubuntu1 [665 kB] ==> default: Get:80 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libssl1.0.0 amd64 1.0.2g-1ubuntu4.1 [1,122 kB] ==> default: Get:81 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 lsb-release all 9.20160110ubuntu0.1 [11.9 kB] ==> default: Get:82 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 sudo amd64 1.8.16-0ubuntu1.1 [389 kB] ==> default: Get:83 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 vim-tiny amd64 2:7.4.1689-3ubuntu1.1 [445 kB] ==> default: Get:84 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 vim-common amd64 2:7.4.1689-3ubuntu1.1 [104 kB] ==> default: Get:85 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 apt-transport-https amd64 1.2.12~ubuntu16.04.1 [25.7 kB] ==> default: Get:86 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 dnsutils amd64 1:9.10.3.dfsg.P4-8ubuntu1 [89.1 kB] ==> default: Get:87 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 bind9-host amd64 1:9.10.3.dfsg.P4-8ubuntu1 [38.4 kB] ==> default: Get:88 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libisc160 amd64 1:9.10.3.dfsg.P4-8ubuntu1 [214 kB] ==> default: Get:89 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libdns162 amd64 1:9.10.3.dfsg.P4-8ubuntu1 [877 kB] ==> default: Get:90 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libisccc140 amd64 1:9.10.3.dfsg.P4-8ubuntu1 [16.3 kB] ==> default: Get:91 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libisccfg140 amd64 1:9.10.3.dfsg.P4-8ubuntu1 [40.5 kB] ==> default: Get:92 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 liblwres141 amd64 1:9.10.3.dfsg.P4-8ubuntu1 [33.0 kB] ==> default: Get:93 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libbind9-140 amd64 1:9.10.3.dfsg.P4-8ubuntu1 [23.6 kB] ==> default: Get:94 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 command-not-found-data amd64 0.3ubuntu16.04.2 [879 kB] ==> default: Get:95 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 python3-commandnotfound all 0.3ubuntu16.04.2 [5,766 B] ==> default: Get:96 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 command-not-found all 0.3ubuntu16.04.2 [3,696 B] ==> default: Get:97 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 dmidecode amd64 3.0-2ubuntu0.1 [48.6 kB] ==> default: Get:98 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 dosfstools amd64 3.0.28-2ubuntu0.1 [63.1 kB] ==> default: Get:99 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libdrm2 amd64 2.4.67-1ubuntu0.16.04.1 [28.1 kB] ==> default: Get:100 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libplymouth4 amd64 0.9.2-3ubuntu13.1 [85.1 kB] ==> default: Get:101 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 lshw amd64 02.17-1.1ubuntu3.2 [215 kB] ==> default: Get:102 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 mtr-tiny amd64 0.86-1ubuntu0.1 [38.2 kB] ==> default: Get:103 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 openssl amd64 1.0.2g-1ubuntu4.1 [491 kB] ==> default: Get:104 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 shared-mime-info amd64 1.5-2ubuntu0.1 [405 kB] ==> default: Get:105 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 wget amd64 1.17.1-1ubuntu1.1 [298 kB] ==> default: Get:106 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 dnsmasq-base amd64 2.75-1ubuntu0.16.04.1 [294 kB] ==> default: Get:107 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 file-roller amd64 3.16.5-0ubuntu1.1 [303 kB] ==> default: Get:108 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 firefox amd64 47.0+build3-0ubuntu0.16.04.1 [45.8 MB] ==> default: Get:109 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libappstream-glib8 amd64 0.5.13-1ubuntu2 [101 kB] ==> default: Get:110 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libdfu1 amd64 0.7.0-0ubuntu4.2 [42.4 kB] ==> default: Get:111 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libfwupd1 amd64 0.7.0-0ubuntu4.2 [27.7 kB] ==> default: Get:112 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 fwupd amd64 0.7.0-0ubuntu4.2 [86.4 kB] ==> default: Get:113 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 gdb amd64 7.11.1-0ubuntu1~16.04 [2,525 kB] ==> default: Get:114 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 gdbserver amd64 7.11.1-0ubuntu1~16.04 [172 kB] ==> default: Get:115 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 ubuntu-software amd64 3.20.1+git20160617.1.0440874.ubuntu-xenial-0ubuntu1~16.04.1 [11.6 kB] ==> default: Get:116 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 gnome-software amd64 3.20.1+git20160617.1.0440874.ubuntu-xenial-0ubuntu1~16.04.1 [225 kB] ==> default: Get:117 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 gnome-software-common all 3.20.1+git20160617.1.0440874.ubuntu-xenial-0ubuntu1~16.04.1 [2,257 kB] ==> default: Get:118 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libboost-date-time1.58.0 amd64 1.58.0+dfsg-5ubuntu3.1 [20.7 kB] ==> default: Get:119 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libboost-system1.58.0 amd64 1.58.0+dfsg-5ubuntu3.1 [9,146 B] ==> default: Get:120 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libboost-filesystem1.58.0 amd64 1.58.0+dfsg-5ubuntu3.1 [37.5 kB] ==> default: Get:121 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libboost-iostreams1.58.0 amd64 1.58.0+dfsg-5ubuntu3.1 [29.0 kB] ==> default: Get:122 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libusbmuxd4 amd64 1.0.10-2ubuntu0.1 [15.2 kB] ==> default: Get:123 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libimobiledevice6 amd64 1.2.0+dfsg-3~ubuntu0.2 [59.1 kB] ==> default: Get:124 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libmetacity-private3a amd64 1:3.18.4-0ubuntu0.3 [258 kB] ==> default: Get:125 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 metacity-common all 1:3.18.4-0ubuntu0.3 [66.9 kB] ==> default: Get:126 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 mysql-common all 5.7.12-0ubuntu1.1 [17.0 kB] ==> default: Get:127 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libmysqlclient20 amd64 5.7.12-0ubuntu1.1 [811 kB] ==> default: Get:128 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 network-manager-gnome amd64 1.2.0-0ubuntu0.16.04.3 [290 kB] ==> default: Get:129 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libnma0 amd64 1.2.0-0ubuntu0.16.04.3 [66.0 kB] ==> default: Get:130 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libnma-common all 1.2.0-0ubuntu0.16.04.3 [5,328 B] ==> default: Get:131 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 ubuntu-mono all 14.04+16.04.20160621-0ubuntu1 [177 kB] ==> default: Get:132 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 light-themes all 14.04+16.04.20160621-0ubuntu1 [153 kB] ==> default: Get:133 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 linux-firmware all 1.157.2 [32.6 MB] ==> default: Get:134 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 linux-image-4.4.0-28-generic amd64 4.4.0-28.47 [18.7 MB] ==> default: Get:135 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 linux-image-extra-4.4.0-28-generic amd64 4.4.0-28.47 [38.8 MB] ==> default: Get:136 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 linux-generic amd64 4.4.0.28.30 [1,790 B] ==> default: Get:137 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 linux-image-generic amd64 4.4.0.28.30 [2,332 B] ==> default: Get:138 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 linux-headers-4.4.0-28 all 4.4.0-28.47 [9,944 kB] ==> default: Get:139 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 linux-headers-4.4.0-28-generic amd64 4.4.0-28.47 [790 kB] ==> default: Get:140 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 linux-headers-generic amd64 4.4.0.28.30 [2,306 B] ==> default: Get:141 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 linux-libc-dev amd64 4.4.0-28.47 [842 kB] ==> default: Get:142 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 printer-driver-brlaser amd64 3-5~ubuntu1 [18.0 kB] ==> default: Get:143 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 software-properties-common all 0.96.20.2 [9,420 B] ==> default: Get:144 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 software-properties-gtk all 0.96.20.2 [47.1 kB] ==> default: Get:145 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 python3-software-properties all 0.96.20.2 [19.6 kB] ==> default: Get:146 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 sbsigntool amd64 0.6-0ubuntu10.1 [54.2 kB] ==> default: Get:147 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 snapd amd64 2.0.9 [4,355 kB] ==> default: Get:148 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 ubuntu-mobile-icons all 14.04+16.04.20160621-0ubuntu1 [6,841 kB] ==> default: Get:149 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 suru-icon-theme all 14.04+16.04.20160621-0ubuntu1 [1,625 kB] ==> default: Get:150 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 ubuntu-artwork all 1:14.04+16.04.20160621-0ubuntu1 [7,624 B] ==> default: Get:151 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 ubuntu-docs all 16.04.4 [1,151 kB] ==> default: Get:152 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 unity-control-center-faces all 15.04.0+16.04.20160413-0ubuntu3 [180 kB] ==> default: Get:153 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 upower amd64 0.99.4-2ubuntu0.2 [95.0 kB] ==> default: Get:154 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 liboxideqt-qmlplugin amd64 1.15.8-0ubuntu0.16.04.1 [167 kB] ==> default: Get:155 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 liboxideqtquick0 amd64 1.15.8-0ubuntu0.16.04.1 [265 kB] ==> default: Get:156 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 liboxideqtcore0 amd64 1.15.8-0ubuntu0.16.04.1 [29.1 MB] ==> default: Get:157 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 oxideqt-codecs amd64 1.15.8-0ubuntu0.16.04.1 [544 kB] ==> default: dpkg-preconfigure: unable to re-open stdin: No such file or directory ==> default: Fetched 299 MB in 5min 43s (869 kB/s) ==> default: (Reading database ... ==> default: (Reading database ... 5% ==> default: (Reading database ... 10% ==> default: (Reading database ... 15% ==> default: (Reading database ... 20% ==> default: (Reading database ... 25% ==> default: (Reading database ... 30% ==> default: (Reading database ... 35% ==> default: (Reading database ... 40% ==> default: (Reading database ... 45% ==> default: (Reading database ... 50% ==> default: (Reading database ... 55% ==> default: (Reading database ... 60% ==> default: (Reading database ... 65% ==> default: (Reading database ... 70% ==> default: (Reading database ... 75% ==> default: (Reading database ... 80% ==> default: (Reading database ... 85% ==> default: (Reading database ... 90% ==> default: (Reading database ... 95% ==> default: (Reading database ... 100% ==> default: (Reading database ... ==> default: 175457 files and directories currently installed.) ==> default: Preparing to unpack .../base-files_9.4ubuntu4.1_amd64.deb ... ==> default: Unpacking base-files (9.4ubuntu4.1) over (9.4ubuntu4) ... ==> default: Processing triggers for plymouth-theme-ubuntu-text (0.9.2-3ubuntu13.1) ... ==> default: update-initramfs: deferring update (trigger activated) ==> default: Processing triggers for install-info (6.1.0.dfsg.1-5) ... ==> default: Processing triggers for cracklib-runtime (2.9.2-1build2) ... ==> default: Processing triggers for man-db (2.7.5-1) ... ==> default: Processing triggers for initramfs-tools (0.122ubuntu8) ... ==> default: update-initramfs: Generating /boot/initrd.img-4.4.0-21-generic ==> default: Setting up base-files (9.4ubuntu4.1) ... ==> default: Installing new version of config file /etc/update-motd.d/10-help-text ... ==> default: (Reading database ... ==> default: (Reading database ... 5% ==> default: (Reading database ... 10% ==> default: (Reading database ... 15% ==> default: (Reading database ... 20% ==> default: (Reading database ... 25% ==> default: (Reading database ... 30% ==> default: (Reading database ... 35% ==> default: (Reading database ... 40% ==> default: (Reading database ... 45% ==> default: (Reading database ... 50% ==> default: (Reading database ... 55% ==> default: (Reading database ... 60% ==> default: (Reading database ... 65% ==> default: (Reading database ... 70% ==> default: (Reading database ... 75% ==> default: (Reading database ... 80% ==> default: (Reading database ... 85% ==> default: (Reading database ... 90% ==> default: (Reading database ... 95% ==> default: (Reading database ... 100% ==> default: (Reading database ... ==> default: 175457 files and directories currently installed.) ==> default: Preparing to unpack .../bash_4.3-14ubuntu1.1_amd64.deb ... ==> default: Unpacking bash (4.3-14ubuntu1.1) over (4.3-14ubuntu1) ... ==> default: Processing triggers for install-info (6.1.0.dfsg.1-5) ... ==> default: Processing triggers for man-db (2.7.5-1) ... ==> default: Setting up bash (4.3-14ubuntu1.1) ... ==> default: Installing new version of config file /etc/skel/.profile ... ==> default: update-alternatives: ==> default: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode ==> default: (Reading database ... ==> default: (Reading database ... 5% ==> default: (Reading database ... 10% ==> default: (Reading database ... 15% ==> default: (Reading database ... 20% ==> default: (Reading database ... 25% ==> default: (Reading database ... 30% ==> default: (Reading database ... 35% ==> default: (Reading database ... 40% ==> default: (Reading database ... 45% ==> default: (Reading database ... 50% ==> default: (Reading database ... 55% ==> default: (Reading database ... 60% ==> default: (Reading database ... 65% ==> default: (Reading database ... 70% ==> default: (Reading database ... 75% ==> default: (Reading database ... 80% ==> default: (Reading database ... 85% ==> default: (Reading database ... 90% ==> default: (Reading database ... 95% ==> default: (Reading database ... 100% ==> default: (Reading database ... ==> default: 175457 files and directories currently installed.) ==> default: Preparing to unpack .../bsdutils_1%3a2.27.1-6ubuntu3.1_amd64.deb ... ==> default: Unpacking bsdutils (1:2.27.1-6ubuntu3.1) over (1:2.27.1-6ubuntu3) ... ==> default: Processing triggers for man-db (2.7.5-1) ... ==> default: Setting up bsdutils (1:2.27.1-6ubuntu3.1) ... ==> default: (Reading database ... ==> default: (Reading database ... 5% ==> default: (Reading database ... 10% ==> default: (Reading database ... 15% ==> default: (Reading database ... 20% ==> default: (Reading database ... 25% ==> default: (Reading database ... 30% ==> default: (Reading database ... 35% ==> default: (Reading database ... 40% ==> default: (Reading database ... 45% ==> default: (Reading database ... 50% ==> default: (Reading database ... 55% ==> default: (Reading database ... 60% ==> default: (Reading database ... 65% ==> default: (Reading database ... 70% ==> default: (Reading database ... 75% ==> default: (Reading database ... 80% ==> default: (Reading database ... 85% ==> default: (Reading database ... 90% ==> default: (Reading database ... 95% ==> default: (Reading database ... 100% ==> default: (Reading database ... ==> default: 175457 files and directories currently installed.) ==> default: Preparing to unpack .../dpkg_1.18.4ubuntu1.1_amd64.deb ... ==> default: Unpacking dpkg (1.18.4ubuntu1.1) over (1.18.4ubuntu1) ... ==> default: Setting up dpkg (1.18.4ubuntu1.1) ... ==> default: Processing triggers for man-db (2.7.5-1) ... ==> default: (Reading database ... ==> default: (Reading database ... 5% ==> default: (Reading database ... 10% ==> default: (Reading database ... 15% ==> default: (Reading database ... 20% ==> default: (Reading database ... 25% ==> default: (Reading database ... 30% ==> default: (Reading database ... 35% ==> default: (Reading database ... 40% ==> default: (Reading database ... 45% ==> default: (Reading database ... 50% ==> default: (Reading database ... 55% ==> default: (Reading database ... 60% ==> default: (Reading database ... 65% ==> default: (Reading database ... 70% ==> default: (Reading database ... 75% ==> default: (Reading database ... 80% ==> default: (Reading database ... 85% ==> default: (Reading database ... 90% ==> default: (Reading database ... 95% ==> default: (Reading database ... 100% ==> default: (Reading database ... ==> default: 175457 files and directories currently installed.) ==> default: Preparing to unpack .../grep_2.25-1~16.04.1_amd64.deb ... ==> default: Unpacking grep (2.25-1~16.04.1) over (2.24-1) ... ==> default: Processing triggers for install-info (6.1.0.dfsg.1-5) ... ==> default: Processing triggers for man-db (2.7.5-1) ... ==> default: Setting up grep (2.25-1~16.04.1) ... ==> default: (Reading database ... ==> default: (Reading database ... 5% ==> default: (Reading database ... 10% ==> default: (Reading database ... 15% ==> default: (Reading database ... 20% ==> default: (Reading database ... 25% ==> default: (Reading database ... 30% ==> default: (Reading database ... 35% ==> default: (Reading database ... 40% ==> default: (Reading database ... 45% ==> default: (Reading database ... 50% ==> default: (Reading database ... 55% ==> default: (Reading database ... 60% ==> default: (Reading database ... 65% ==> default: (Reading database ... 70% ==> default: (Reading database ... 75% ==> default: (Reading database ... 80% ==> default: (Reading database ... 85% ==> default: (Reading database ... 90% ==> default: (Reading database ... 95% ==> default: (Reading database ... 100% ==> default: (Reading database ... ==> default: 175457 files and directories currently installed.) ==> default: Preparing to unpack .../init-system-helpers_1.29ubuntu2_all.deb ... ==> default: Unpacking init-system-helpers (1.29ubuntu2) over (1.29ubuntu1) ... ==> default: Processing triggers for man-db (2.7.5-1) ... ==> default: Setting up init-system-helpers (1.29ubuntu2) ... ==> default: (Reading database ... ==> default: (Reading database ... 5% ==> default: (Reading database ... 10% ==> default: (Reading database ... 15% ==> default: (Reading database ... 20% ==> default: (Reading database ... 25% ==> default: (Reading database ... 30% 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snapd (2.0.9) over (2.0.5) ... ==> default: Preparing to unpack .../ubuntu-mobile-icons_14.04+16.04.20160621-0ubuntu1_all.deb ... ==> default: Unpacking ubuntu-mobile-icons (14.04+16.04.20160621-0ubuntu1) over (14.04+16.04.20160415-0ubuntu2) ... ==> default: Preparing to unpack .../suru-icon-theme_14.04+16.04.20160621-0ubuntu1_all.deb ... ==> default: Unpacking suru-icon-theme (14.04+16.04.20160621-0ubuntu1) over (14.04+16.04.20160415-0ubuntu2) ... ==> default: Preparing to unpack .../ubuntu-artwork_1%3a14.04+16.04.20160621-0ubuntu1_all.deb ... ==> default: Unpacking ubuntu-artwork (1:14.04+16.04.20160621-0ubuntu1) over (1:14.04+16.04.20160415-0ubuntu2) ... ==> default: Preparing to unpack .../ubuntu-docs_16.04.4_all.deb ... ==> default: Unpacking ubuntu-docs (16.04.4) over (16.04.3) ... ==> default: Preparing to unpack .../unity-control-center-faces_15.04.0+16.04.20160413-0ubuntu3_all.deb ... ==> default: Unpacking unity-control-center-faces (15.04.0+16.04.20160413-0ubuntu3) over (15.04.0+16.04.20160413-0ubuntu2) ... ==> default: Preparing to unpack .../upower_0.99.4-2ubuntu0.2_amd64.deb ... ==> default: Unpacking upower (0.99.4-2ubuntu0.2) over (0.99.4-2) ... ==> default: Preparing to unpack .../liboxideqt-qmlplugin_1.15.8-0ubuntu0.16.04.1_amd64.deb ... ==> default: Unpacking liboxideqt-qmlplugin:amd64 (1.15.8-0ubuntu0.16.04.1) over (1.14.9-0ubuntu0.16.04.1) ... ==> default: Preparing to unpack .../liboxideqtquick0_1.15.8-0ubuntu0.16.04.1_amd64.deb ... ==> default: Unpacking liboxideqtquick0:amd64 (1.15.8-0ubuntu0.16.04.1) over (1.14.9-0ubuntu0.16.04.1) ... ==> default: Preparing to unpack .../liboxideqtcore0_1.15.8-0ubuntu0.16.04.1_amd64.deb ... ==> default: Unpacking liboxideqtcore0:amd64 (1.15.8-0ubuntu0.16.04.1) over (1.14.9-0ubuntu0.16.04.1) ... ==> default: Preparing to unpack .../oxideqt-codecs_1.15.8-0ubuntu0.16.04.1_amd64.deb ... ==> default: Unpacking oxideqt-codecs:amd64 (1.15.8-0ubuntu0.16.04.1) over (1.14.9-0ubuntu0.16.04.1) ... ==> default: Processing triggers for man-db (2.7.5-1) ... ==> default: Processing triggers for libc-bin (2.23-0ubuntu3) ... ==> default: Processing triggers for mime-support (3.59ubuntu1) ... ==> default: Processing triggers for gnome-menus (3.13.3-6ubuntu3) ... ==> default: Processing triggers for hicolor-icon-theme (0.15-0ubuntu1) ... ==> default: Processing triggers for doc-base (0.10.7) ... ==> default: Processing 1 changed doc-base file... ==> default: Processing triggers for install-info (6.1.0.dfsg.1-5) ... ==> default: Processing triggers for sgml-base (1.26+nmu4ubuntu1) ... ==> default: Processing triggers for cups (2.1.3-4) ... ==> default: Updating PPD files for brlaser ... ==> default: Updating PPD files for gutenprint ... ==> default: Setting up udev (229-4ubuntu6) ... ==> default: addgroup: ==> default: The group `input' already exists as a system group. Exiting. ==> default: update-initramfs: deferring update (trigger activated) ==> default: Setting up libpam-systemd:amd64 (229-4ubuntu6) ... ==> default: Setting up initramfs-tools-bin (0.122ubuntu8.1) ... ==> default: Setting up initramfs-tools-core (0.122ubuntu8.1) ... ==> default: Setting up initramfs-tools (0.122ubuntu8.1) ... ==> default: update-initramfs: deferring update (trigger activated) ==> default: Setting up libapt-inst2.0:amd64 (1.2.12~ubuntu16.04.1) ... ==> default: Setting up apt-utils (1.2.12~ubuntu16.04.1) ... ==> default: Setting up bash-completion (1:2.1-4.2ubuntu1.1) ... ==> default: Setting up libglib2.0-0:amd64 (2.48.1-1~ubuntu16.04.1) ... ==> default: Setting up libaccountsservice0:amd64 (0.6.40-2ubuntu11.1) ... ==> default: Setting up accountsservice (0.6.40-2ubuntu11.1) ... ==> default: Setting up language-selector-common (0.165.3) ... ==> default: Setting up language-selector-gnome (0.165.3) ... ==> default: Setting up libnm-gtk-common (1.2.0-0ubuntu0.16.04.3) ... ==> default: Setting up libnm-gtk0:amd64 (1.2.0-0ubuntu0.16.04.3) ... ==> default: Setting up libunity-control-center1 (15.04.0+16.04.20160413-0ubuntu3) ... ==> default: Setting up libupower-glib3:amd64 (0.99.4-2ubuntu0.2) ... ==> default: Setting up libxml2:amd64 (2.9.3+dfsg1-1ubuntu0.1) ... ==> default: Setting up libglib2.0-data (2.48.1-1~ubuntu16.04.1) ... ==> default: Setting up libglib2.0-bin (2.48.1-1~ubuntu16.04.1) ... ==> default: Setting up glib-networking-common (2.48.2-1~ubuntu16.04.1) ... ==> default: Setting up libtasn1-6:amd64 (4.7-3ubuntu0.16.04.1) ... ==> default: Setting up libgnutls30:amd64 (3.4.10-4ubuntu1.1) ... ==> default: Setting up glib-networking-services (2.48.2-1~ubuntu16.04.1) ... ==> default: Setting up glib-networking:amd64 (2.48.2-1~ubuntu16.04.1) ... ==> default: Setting up libgnutls-openssl27:amd64 (3.4.10-4ubuntu1.1) ... ==> default: Setting up uuid-runtime (2.27.1-6ubuntu3.1) ... ==> default: Setting up fonts-opensymbol (2:102.7+LibO5.1.4-0ubuntu1) ... ==> default: Setting up uno-libs3 (5.1.4-0ubuntu1) ... ==> default: Setting up ure (5.1.4-0ubuntu1) ... ==> default: Setting up libexpat1:amd64 (2.1.0-7ubuntu0.16.04.2) ... ==> default: Setting up libldap-2.4-2:amd64 (2.4.42+dfsg-2ubuntu3.1) ... ==> default: Setting up libwhoopsie0:amd64 (0.2.52.1) ... ==> default: Setting up whoopsie (0.2.52.1) ... ==> default: Setting up tzdata (2016f-0ubuntu0.16.04) ... ==> default: Current default time zone: 'Etc/UTC' ==> default: Local time is now: Wed Jul 6 16:58:20 UTC 2016. ==> default: Universal Time is now: Wed Jul 6 16:58:20 UTC 2016. ==> default: Run 'dpkg-reconfigure tzdata' if you wish to change it. ==> default: Setting up dh-python (2.20151103ubuntu1.1) ... ==> default: Setting up distro-info-data (0.28ubuntu0.1) ... ==> default: Setting up libisc-export160 (1:9.10.3.dfsg.P4-8ubuntu1) ... ==> default: Setting up libdns-export162 (1:9.10.3.dfsg.P4-8ubuntu1) ... ==> default: Setting up libssl1.0.0:amd64 (1.0.2g-1ubuntu4.1) ... ==> default: Setting up lsb-release (9.20160110ubuntu0.1) ... ==> default: Setting up sudo (1.8.16-0ubuntu1.1) ... ==> default: Setting up vim-common (2:7.4.1689-3ubuntu1.1) ... ==> default: Setting up apt-transport-https (1.2.12~ubuntu16.04.1) ... ==> default: Setting up libisc160:amd64 (1:9.10.3.dfsg.P4-8ubuntu1) ... ==> default: Setting up libdns162:amd64 (1:9.10.3.dfsg.P4-8ubuntu1) ... ==> default: Setting up libisccc140:amd64 (1:9.10.3.dfsg.P4-8ubuntu1) ... ==> default: Setting up libisccfg140:amd64 (1:9.10.3.dfsg.P4-8ubuntu1) ... ==> default: Setting up libbind9-140:amd64 (1:9.10.3.dfsg.P4-8ubuntu1) ... ==> default: Setting up liblwres141:amd64 (1:9.10.3.dfsg.P4-8ubuntu1) ... ==> default: Setting up bind9-host (1:9.10.3.dfsg.P4-8ubuntu1) ... ==> default: Setting up dnsutils (1:9.10.3.dfsg.P4-8ubuntu1) ... ==> default: Setting up command-not-found-data (0.3ubuntu16.04.2) ... ==> default: Setting up python3-commandnotfound (0.3ubuntu16.04.2) ... ==> default: Setting up command-not-found (0.3ubuntu16.04.2) ... ==> default: Setting up dmidecode (3.0-2ubuntu0.1) ... ==> default: Setting up dosfstools (3.0.28-2ubuntu0.1) ... ==> default: Setting up libdrm2:amd64 (2.4.67-1ubuntu0.16.04.1) ... ==> default: Setting up libplymouth4:amd64 (0.9.2-3ubuntu13.1) ... ==> default: Setting up lshw (02.17-1.1ubuntu3.2) ... ==> default: Setting up mtr-tiny (0.86-1ubuntu0.1) ... ==> default: Setting up openssl (1.0.2g-1ubuntu4.1) ... ==> default: Setting up shared-mime-info (1.5-2ubuntu0.1) ... ==> default: Setting up wget (1.17.1-1ubuntu1.1) ... ==> default: Setting up dnsmasq-base (2.75-1ubuntu0.16.04.1) ... ==> default: Setting up file-roller (3.16.5-0ubuntu1.1) ... ==> default: Setting up firefox (47.0+build3-0ubuntu0.16.04.1) ... ==> default: Please restart all running instances of firefox, or you will experience problems. ==> default: Setting up libappstream-glib8:amd64 (0.5.13-1ubuntu2) ... ==> default: Setting up libdfu1:amd64 (0.7.0-0ubuntu4.2) ... ==> default: Setting up libfwupd1:amd64 (0.7.0-0ubuntu4.2) ... ==> default: Setting up fwupd (0.7.0-0ubuntu4.2) ... ==> default: Setting up gdb (7.11.1-0ubuntu1~16.04) ... ==> default: Setting up gdbserver (7.11.1-0ubuntu1~16.04) ... ==> default: Setting up gnome-software-common (3.20.1+git20160617.1.0440874.ubuntu-xenial-0ubuntu1~16.04.1) ... ==> default: Setting up gnome-software (3.20.1+git20160617.1.0440874.ubuntu-xenial-0ubuntu1~16.04.1) ... ==> default: Setting up libboost-date-time1.58.0:amd64 (1.58.0+dfsg-5ubuntu3.1) ... ==> default: Setting up libboost-system1.58.0:amd64 (1.58.0+dfsg-5ubuntu3.1) ... ==> default: Setting up libboost-filesystem1.58.0:amd64 (1.58.0+dfsg-5ubuntu3.1) ... ==> default: Setting up libboost-iostreams1.58.0:amd64 (1.58.0+dfsg-5ubuntu3.1) ... ==> default: Setting up libusbmuxd4:amd64 (1.0.10-2ubuntu0.1) ... ==> default: Setting up libimobiledevice6:amd64 (1.2.0+dfsg-3~ubuntu0.2) ... ==> default: Setting up metacity-common (1:3.18.4-0ubuntu0.3) ... ==> default: Setting up mysql-common (5.7.12-0ubuntu1.1) ... ==> default: Setting up libmysqlclient20:amd64 (5.7.12-0ubuntu1.1) ... ==> default: Setting up libnma-common (1.2.0-0ubuntu0.16.04.3) ... ==> default: Setting up libnma0:amd64 (1.2.0-0ubuntu0.16.04.3) ... ==> default: Setting up network-manager-gnome (1.2.0-0ubuntu0.16.04.3) ... ==> default: Setting up ubuntu-mono (14.04+16.04.20160621-0ubuntu1) ... ==> default: Setting up light-themes (14.04+16.04.20160621-0ubuntu1) ... ==> default: Setting up linux-firmware (1.157.2) ... ==> default: Setting up linux-image-4.4.0-28-generic (4.4.0-28.47) ... ==> default: Running depmod. ==> default: update-initramfs: deferring update (hook will be called later) ==> default: Examining /etc/kernel/postinst.d. ==> default: run-parts: executing /etc/kernel/postinst.d/apt-auto-removal ==> default: 4.4.0-28-generic ==> default: /boot/vmlinuz-4.4.0-28-generic ==> default: run-parts: executing /etc/kernel/postinst.d/dkms ==> default: 4.4.0-28-generic ==> default: /boot/vmlinuz-4.4.0-28-generic ==> default: run-parts: executing /etc/kernel/postinst.d/initramfs-tools ==> default: 4.4.0-28-generic ==> default: /boot/vmlinuz-4.4.0-28-generic ==> default: update-initramfs: Generating /boot/initrd.img-4.4.0-28-generic ==> default: run-parts: executing /etc/kernel/postinst.d/pm-utils ==> default: 4.4.0-28-generic ==> default: /boot/vmlinuz-4.4.0-28-generic ==> default: run-parts: executing /etc/kernel/postinst.d/unattended-upgrades ==> default: 4.4.0-28-generic ==> default: /boot/vmlinuz-4.4.0-28-generic ==> default: run-parts: executing /etc/kernel/postinst.d/update-notifier ==> default: 4.4.0-28-generic ==> default: /boot/vmlinuz-4.4.0-28-generic ==> default: run-parts: executing /etc/kernel/postinst.d/zz-update-grub ==> default: 4.4.0-28-generic ==> default: /boot/vmlinuz-4.4.0-28-generic ==> default: Generating grub configuration file ... ==> default: Warning: Setting GRUB_TIMEOUT to a non-zero value when GRUB_HIDDEN_TIMEOUT is set is no longer supported. ==> default: Found linux image: /boot/vmlinuz-4.4.0-28-generic ==> default: Found initrd image: /boot/initrd.img-4.4.0-28-generic ==> default: Found linux image: /boot/vmlinuz-4.4.0-21-generic ==> default: Found initrd image: /boot/initrd.img-4.4.0-21-generic ==> default: Found memtest86+ image: /memtest86+.elf ==> default: Found memtest86+ image: /memtest86+.bin ==> default: done ==> default: Setting up linux-image-extra-4.4.0-28-generic (4.4.0-28.47) ... ==> default: run-parts: executing /etc/kernel/postinst.d/apt-auto-removal ==> default: 4.4.0-28-generic ==> default: /boot/vmlinuz-4.4.0-28-generic ==> default: run-parts: executing /etc/kernel/postinst.d/dkms ==> default: 4.4.0-28-generic ==> default: /boot/vmlinuz-4.4.0-28-generic ==> default: run-parts: executing /etc/kernel/postinst.d/initramfs-tools ==> default: 4.4.0-28-generic ==> default: /boot/vmlinuz-4.4.0-28-generic ==> default: update-initramfs: Generating /boot/initrd.img-4.4.0-28-generic ==> default: run-parts: executing /etc/kernel/postinst.d/pm-utils ==> default: 4.4.0-28-generic ==> default: /boot/vmlinuz-4.4.0-28-generic ==> default: run-parts: executing /etc/kernel/postinst.d/unattended-upgrades ==> default: 4.4.0-28-generic ==> default: /boot/vmlinuz-4.4.0-28-generic ==> default: run-parts: executing /etc/kernel/postinst.d/update-notifier ==> default: 4.4.0-28-generic ==> default: /boot/vmlinuz-4.4.0-28-generic ==> default: run-parts: executing /etc/kernel/postinst.d/zz-update-grub ==> default: 4.4.0-28-generic ==> default: /boot/vmlinuz-4.4.0-28-generic ==> default: Generating grub configuration file ... ==> default: Warning: Setting GRUB_TIMEOUT to a non-zero value when GRUB_HIDDEN_TIMEOUT is set is no longer supported. ==> default: Found linux image: /boot/vmlinuz-4.4.0-28-generic ==> default: Found initrd image: /boot/initrd.img-4.4.0-28-generic ==> default: Found linux image: /boot/vmlinuz-4.4.0-21-generic ==> default: Found initrd image: /boot/initrd.img-4.4.0-21-generic ==> default: Found memtest86+ image: /memtest86+.elf ==> default: Found memtest86+ image: /memtest86+.bin ==> default: done ==> default: Setting up linux-image-generic (4.4.0.28.30) ... ==> default: Setting up linux-headers-4.4.0-28 (4.4.0-28.47) ... ==> default: Setting up linux-headers-4.4.0-28-generic (4.4.0-28.47) ... ==> default: Examining /etc/kernel/header_postinst.d. ==> default: run-parts: executing /etc/kernel/header_postinst.d/dkms ==> default: 4.4.0-28-generic ==> default: /boot/vmlinuz-4.4.0-28-generic ==> default: Setting up linux-headers-generic (4.4.0.28.30) ... ==> default: Setting up linux-generic (4.4.0.28.30) ... ==> default: Setting up linux-libc-dev:amd64 (4.4.0-28.47) ... ==> default: Setting up printer-driver-brlaser (3-5~ubuntu1) ... ==> default: Setting up python3-software-properties (0.96.20.2) ... ==> default: Setting up software-properties-common (0.96.20.2) ... ==> default: Setting up software-properties-gtk (0.96.20.2) ... ==> default: Setting up sbsigntool (0.6-0ubuntu10.1) ... ==> default: Setting up snapd (2.0.9) ... ==> default: Removing obsolete conffile /etc/ld.so.conf.d/snappy.conf ... ==> default: Setting up ubuntu-mobile-icons (14.04+16.04.20160621-0ubuntu1) ... ==> default: Setting up suru-icon-theme (14.04+16.04.20160621-0ubuntu1) ... ==> default: Setting up ubuntu-artwork (1:14.04+16.04.20160621-0ubuntu1) ... ==> default: Setting up ubuntu-docs (16.04.4) ... ==> default: Setting up unity-control-center-faces (15.04.0+16.04.20160413-0ubuntu3) ... ==> default: Setting up upower (0.99.4-2ubuntu0.2) ... ==> default: Setting up oxideqt-codecs:amd64 (1.15.8-0ubuntu0.16.04.1) ... ==> default: Setting up liboxideqtcore0:amd64 (1.15.8-0ubuntu0.16.04.1) ... ==> default: Setting up liboxideqtquick0:amd64 (1.15.8-0ubuntu0.16.04.1) ... ==> default: Setting up liboxideqt-qmlplugin:amd64 (1.15.8-0ubuntu0.16.04.1) ... ==> default: Processing triggers for gconf2 (3.2.6-3ubuntu6) ... ==> default: Setting up libmetacity-private3a:amd64 (1:3.18.4-0ubuntu0.3) ... ==> default: Processing triggers for desktop-file-utils (0.22-1ubuntu5) ... ==> default: Processing triggers for bamfdaemon (0.5.3~bzr0+16.04.20160523-0ubuntu1) ... ==> default: Rebuilding /usr/share/applications/bamf-2.index... ==> default: Setting up vim-tiny (2:7.4.1689-3ubuntu1.1) ... ==> default: Setting up ubuntu-software (3.20.1+git20160617.1.0440874.ubuntu-xenial-0ubuntu1~16.04.1) ... ==> default: Setting up libreoffice-style-galaxy (1:5.1.4-0ubuntu1) ... ==> default: Setting up libreoffice-style-breeze (1:5.1.4-0ubuntu1) ... ==> default: Setting up libreoffice-style-elementary (1:5.1.4-0ubuntu1) ... ==> default: Setting up libreoffice-common (1:5.1.4-0ubuntu1) ... ==> default: Installing new version of config file /etc/bash_completion.d/libreoffice.sh ... ==> default: Setting up libreoffice-core (1:5.1.4-0ubuntu1) ... ==> default: Setting up libreoffice-base-core (1:5.1.4-0ubuntu1) ... ==> default: Setting up libreoffice-calc (1:5.1.4-0ubuntu1) ... ==> default: Setting up libreoffice-gtk (1:5.1.4-0ubuntu1) ... ==> default: Setting up libreoffice-gnome (1:5.1.4-0ubuntu1) ... ==> default: Setting up libreoffice-writer (1:5.1.4-0ubuntu1) ... ==> default: Setting up libreoffice-draw (1:5.1.4-0ubuntu1) ... ==> default: Setting up libreoffice-impress (1:5.1.4-0ubuntu1) ... ==> default: Setting up libreoffice-ogltrans (1:5.1.4-0ubuntu1) ... ==> default: Setting up libreoffice-pdfimport (1:5.1.4-0ubuntu1) ... ==> default: Setting up python3-uno (1:5.1.4-0ubuntu1) ... ==> default: Setting up libreoffice-math (1:5.1.4-0ubuntu1) ... ==> default: Setting up libreoffice-avmedia-backend-gstreamer (1:5.1.4-0ubuntu1) ... ==> default: Setting up indicator-bluetooth (0.0.6+16.04.20160526-0ubuntu1) ... ==> default: Setting up unity-control-center (15.04.0+16.04.20160413-0ubuntu3) ... ==> default: Processing triggers for dbus (1.10.6-1ubuntu3) ... ==> default: Processing triggers for initramfs-tools (0.122ubuntu8.1) ... ==> default: update-initramfs: Generating /boot/initrd.img-4.4.0-28-generic ==> default: Processing triggers for libc-bin (2.23-0ubuntu3) ... ==> default: Reading package lists... ==> default: Building dependency tree... ==> default: Reading state information... ==> default: 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. ==> default: Reading package lists... ==> default: Building dependency tree... ==> default: Reading state information... ==> default: The following additional packages will be installed: ==> default: autoconf automake autotools-dev bzip2-doc cdbs debhelper ==> default: dh-strip-nondeterminism dh-translations gfortran gfortran-5 icu-devtools ==> default: intltool libblas-common libblas-dev libblas3 libbz2-dev ==> default: libfile-stripnondeterminism-perl libgfortran-5-dev libgfortran3 libicu-dev ==> default: libjpeg-dev libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblapack3 ==> default: liblzma-dev libmail-sendmail-perl libncurses5-dev libpcre3-dev libpcre32-3 ==> default: libpcrecpp0v5 libpng12-dev libreadline-dev libreadline6-dev libsigsegv2 ==> default: libsys-hostname-long-perl libtinfo-dev m4 po-debconf python-pkg-resources ==> default: python-scour python-six r-base-core r-base-dev r-base-html r-cran-boot ==> default: r-cran-class r-cran-cluster r-cran-codetools r-cran-foreign ==> default: r-cran-kernsmooth r-cran-lattice r-cran-mass r-cran-matrix r-cran-mgcv ==> default: r-cran-nlme r-cran-nnet r-cran-rpart r-cran-spatial r-cran-survival ==> default: r-doc-html r-recommended zlib1g-dev ==> default: Suggested packages: ==> default: autoconf-archive gnu-standards autoconf-doc libtool devscripts dh-make ==> default: gfortran-multilib gfortran-doc gfortran-5-multilib gfortran-5-doc ==> default: libgfortran3-dbg liblapack-doc-man liblapack-doc icu-doc liblzma-doc ==> default: ncurses-doc readline-doc libmail-box-perl python-setuptools python-rsvg ==> default: python-cairo ess r-doc-info | r-doc-pdf r-mathlib texlive-base ==> default: texlive-latex-base texlive-generic-recommended texlive-fonts-recommended ==> default: texlive-fonts-extra texlive-extra-utils texlive-latex-recommended ==> default: texlive-latex-extra texinfo ==> default: The following NEW packages will be installed: ==> default: autoconf automake autotools-dev bzip2-doc cdbs debhelper ==> default: dh-strip-nondeterminism dh-translations gfortran gfortran-5 icu-devtools ==> default: intltool libblas-common libblas-dev libblas3 libbz2-dev ==> default: libfile-stripnondeterminism-perl libgfortran-5-dev libgfortran3 libicu-dev ==> default: libjpeg-dev libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblapack3 ==> default: liblzma-dev libmail-sendmail-perl libncurses5-dev libpcre3-dev libpcre32-3 ==> default: libpcrecpp0v5 libpng12-dev libreadline-dev libreadline6-dev libsigsegv2 ==> default: libsys-hostname-long-perl libtinfo-dev m4 po-debconf python-pkg-resources ==> default: python-scour python-six r-base r-base-core r-base-dev r-base-html ==> default: r-cran-boot r-cran-class r-cran-cluster r-cran-codetools r-cran-foreign ==> default: r-cran-kernsmooth r-cran-lattice r-cran-mass r-cran-matrix r-cran-mgcv ==> default: r-cran-nlme r-cran-nnet r-cran-rpart r-cran-spatial r-cran-survival ==> default: r-doc-html r-recommended zlib1g-dev ==> default: 0 upgraded, 64 newly installed, 0 to remove and 0 not upgraded. ==> default: Need to get 63.7 MB of archives. ==> default: After this operation, 164 MB of additional disk space will be used. ==> default: Get:1 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 libpcrecpp0v5 amd64 2:8.38-3.1 [15.2 kB] ==> default: Get:2 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 libsigsegv2 amd64 2.10-4 [14.1 kB] ==> default: Get:3 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 m4 amd64 1.4.17-5 [195 kB] ==> default: Get:4 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 autoconf all 2.69-9 [321 kB] ==> default: Get:5 http://cran.rstudio.com/bin/linux/ubuntu trusty/ r-base-core 3.3.1-1trusty0 [21.0 MB] ==> default: Get:6 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 autotools-dev all 20150820.1 [39.8 kB] ==> default: Get:7 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 automake all 1:1.15-4ubuntu1 [510 kB] ==> default: Get:8 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 bzip2-doc all 1.0.6-8 [295 kB] ==> default: Get:9 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 po-debconf all 1.0.19 [234 kB] ==> default: Get:10 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 libfile-stripnondeterminism-perl all 0.015-1 [10.3 kB] ==> default: Get:11 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 dh-strip-nondeterminism all 0.015-1 [4,864 B] ==> default: Get:12 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 debhelper all 9.20160115ubuntu3 [739 kB] ==> default: Get:13 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 intltool all 0.51.0-2 [44.7 kB] ==> default: Get:14 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 dh-translations all 129 [22.1 kB] ==> default: Get:15 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 python-six all 1.10.0-3 [10.9 kB] ==> default: Get:16 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 python-pkg-resources all 20.7.0-1 [108 kB] ==> default: Get:17 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 python-scour all 0.32-1 [42.7 kB] ==> default: Get:18 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 cdbs all 0.4.130ubuntu2 [42.8 kB] ==> default: Get:19 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgfortran3 amd64 5.3.1-14ubuntu2.1 [260 kB] ==> default: Get:20 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgfortran-5-dev amd64 5.3.1-14ubuntu2.1 [291 kB] ==> default: Get:21 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 gfortran-5 amd64 5.3.1-14ubuntu2.1 [8,164 kB] ==> default: Get:22 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 gfortran amd64 4:5.3.1-1ubuntu1 [1,288 B] ==> default: Get:23 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 icu-devtools amd64 55.1-7 [165 kB] ==> default: Get:24 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 libblas-common amd64 3.6.0-2ubuntu2 [5,342 B] ==> default: Get:25 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 libblas3 amd64 3.6.0-2ubuntu2 [147 kB] ==> default: Get:26 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 libblas-dev amd64 3.6.0-2ubuntu2 [153 kB] ==> default: Get:27 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 libbz2-dev amd64 1.0.6-8 [29.1 kB] ==> default: Get:28 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 libicu-dev amd64 55.1-7 [8,546 kB] ==> default: Get:29 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 libjpeg-turbo8-dev amd64 1.4.2-0ubuntu3 [254 kB] ==> default: Get:30 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 libjpeg8-dev amd64 8c-2ubuntu8 [1,552 B] ==> default: Get:31 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 libjpeg-dev amd64 8c-2ubuntu8 [1,546 B] ==> default: Get:32 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 liblapack3 amd64 3.6.0-2ubuntu2 [1,938 kB] ==> default: Get:33 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 liblapack-dev amd64 3.6.0-2ubuntu2 [1,948 kB] ==> default: Get:34 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 libsys-hostname-long-perl all 1.5-1 [11.7 kB] ==> default: Get:35 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 libmail-sendmail-perl all 0.79.16-1 [26.5 kB] ==> default: Get:36 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 libtinfo-dev amd64 6.0+20160213-1ubuntu1 [77.4 kB] ==> default: Get:37 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 libncurses5-dev amd64 6.0+20160213-1ubuntu1 [175 kB] ==> default: Get:38 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 libpcre32-3 amd64 2:8.38-3.1 [136 kB] ==> default: Get:39 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 libpcre3-dev amd64 2:8.38-3.1 [525 kB] ==> default: Get:40 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 zlib1g-dev amd64 1:1.2.8.dfsg-2ubuntu4 [168 kB] ==> default: Get:41 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 libpng12-dev amd64 1.2.54-1ubuntu1 [184 kB] ==> default: Get:42 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 libreadline6-dev amd64 6.3-8ubuntu2 [124 kB] ==> default: Get:43 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 libreadline-dev amd64 6.3-8ubuntu2 [992 B] ==> default: Get:44 http://us.archive.ubuntu.com/ubuntu xenial/universe amd64 r-cran-mass amd64 7.3-45-1 [1,018 kB] ==> default: Get:45 http://us.archive.ubuntu.com/ubuntu xenial/universe amd64 r-cran-spatial amd64 7.3-11-1 [118 kB] ==> default: Get:46 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 liblzma-dev amd64 5.1.1alpha+20120614-2ubuntu2 [137 kB] ==> default: Get:47 http://cran.rstudio.com/bin/linux/ubuntu trusty/ r-cran-boot 1.3-17-1trusty0 [576 kB] ==> default: Get:48 http://cran.rstudio.com/bin/linux/ubuntu trusty/ r-cran-cluster 2.0.4-1trusty0 [483 kB] ==> default: Get:49 http://cran.rstudio.com/bin/linux/ubuntu trusty/ r-cran-foreign 0.8.66-1trusty0 [209 kB] ==> default: Get:50 http://cran.rstudio.com/bin/linux/ubuntu trusty/ r-cran-kernsmooth 2.23-15-2trusty0 [81.2 kB] ==> default: Get:51 http://cran.rstudio.com/bin/linux/ubuntu trusty/ r-cran-lattice 0.20-33-1trusty0 [714 kB] ==> default: Get:52 http://cran.rstudio.com/bin/linux/ubuntu trusty/ r-cran-nlme 3.1.128-2trusty0 [2,016 kB] ==> default: Get:53 http://cran.rstudio.com/bin/linux/ubuntu trusty/ r-cran-matrix 1.2-6-1trusty0 [2,990 kB] ==> default: Get:54 http://cran.rstudio.com/bin/linux/ubuntu trusty/ r-cran-mgcv 1.8-12-1cran1trusty0 [1,999 kB] ==> default: Get:55 http://cran.rstudio.com/bin/linux/ubuntu trusty/ r-cran-survival 2.39-4-2trusty0 [4,591 kB] ==> default: Get:56 http://cran.rstudio.com/bin/linux/ubuntu trusty/ r-cran-rpart 4.1-10-1trusty0 [861 kB] ==> default: Get:57 http://cran.rstudio.com/bin/linux/ubuntu trusty/ r-cran-class 7.3-14-1trusty0 [80.9 kB] ==> default: Get:58 http://cran.rstudio.com/bin/linux/ubuntu trusty/ r-cran-nnet 7.3-12-1trusty0 [97.0 kB] ==> default: Get:59 http://cran.rstudio.com/bin/linux/ubuntu trusty/ r-cran-codetools 0.2-14-2trusty0 [46.5 kB] ==> default: Get:60 http://cran.rstudio.com/bin/linux/ubuntu trusty/ r-recommended 3.3.1-1trusty0 [2,732 B] ==> default: Get:61 http://cran.rstudio.com/bin/linux/ubuntu trusty/ r-base 3.3.1-1trusty0 [40.2 kB] ==> default: Get:62 http://cran.rstudio.com/bin/linux/ubuntu trusty/ r-base-dev 3.3.1-1trusty0 [4,298 B] ==> default: Get:63 http://cran.rstudio.com/bin/linux/ubuntu trusty/ r-doc-html 3.3.1-1trusty0 [543 kB] ==> default: Get:64 http://cran.rstudio.com/bin/linux/ubuntu trusty/ r-base-html 3.3.1-1trusty0 [85.2 kB] ==> default: dpkg-preconfigure: unable to re-open stdin: No such file or directory ==> default: Fetched 63.7 MB in 47s (1,351 kB/s) ==> default: Selecting previously unselected package libpcrecpp0v5:amd64. ==> default: (Reading database ... ==> default: (Reading database ... 5% ==> default: (Reading database ... 10% ==> default: (Reading database ... 15% ==> default: (Reading database ... 20% ==> default: (Reading database ... 25% ==> default: (Reading database ... 30% ==> default: (Reading database ... 35% ==> default: (Reading database ... 40% ==> default: (Reading database ... 45% ==> default: (Reading database ... 50% ==> default: (Reading database ... 55% ==> default: (Reading database ... 60% ==> default: (Reading database ... 65% ==> default: (Reading database ... 70% ==> default: (Reading database ... 75% ==> default: (Reading database ... 80% ==> default: (Reading database ... 85% ==> default: (Reading database ... 90% ==> default: (Reading database ... 95% ==> default: (Reading database ... 100% ==> default: (Reading database ... ==> default: 207957 files and directories currently installed.) ==> default: Preparing to unpack .../libpcrecpp0v5_2%3a8.38-3.1_amd64.deb ... ==> default: Unpacking libpcrecpp0v5:amd64 (2:8.38-3.1) ... ==> default: Selecting previously unselected package libsigsegv2:amd64. ==> default: Preparing to unpack .../libsigsegv2_2.10-4_amd64.deb ... ==> default: Unpacking libsigsegv2:amd64 (2.10-4) ... ==> default: Selecting previously unselected package m4. ==> default: Preparing to unpack .../archives/m4_1.4.17-5_amd64.deb ... ==> default: Unpacking m4 (1.4.17-5) ... ==> default: Selecting previously unselected package autoconf. ==> default: Preparing to unpack .../autoconf_2.69-9_all.deb ... ==> default: Unpacking autoconf (2.69-9) ... ==> default: Selecting previously unselected package autotools-dev. ==> default: Preparing to unpack .../autotools-dev_20150820.1_all.deb ... ==> default: Unpacking autotools-dev (20150820.1) ... ==> default: Selecting previously unselected package automake. ==> default: Preparing to unpack .../automake_1%3a1.15-4ubuntu1_all.deb ... ==> default: 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.../debhelper_9.20160115ubuntu3_all.deb ... ==> default: Unpacking debhelper (9.20160115ubuntu3) ... ==> default: Selecting previously unselected package intltool. ==> default: Preparing to unpack .../intltool_0.51.0-2_all.deb ... ==> default: Unpacking intltool (0.51.0-2) ... ==> default: Selecting previously unselected package dh-translations. ==> default: Preparing to unpack .../dh-translations_129_all.deb ... ==> default: Unpacking dh-translations (129) ... ==> default: Selecting previously unselected package python-six. ==> default: Preparing to unpack .../python-six_1.10.0-3_all.deb ... ==> default: Unpacking python-six (1.10.0-3) ... ==> default: Selecting previously unselected package python-pkg-resources. ==> default: Preparing to unpack .../python-pkg-resources_20.7.0-1_all.deb ... ==> default: Unpacking python-pkg-resources (20.7.0-1) ... ==> default: Selecting previously unselected package python-scour. ==> default: Preparing to unpack .../python-scour_0.32-1_all.deb ... ==> default: Unpacking python-scour (0.32-1) ... ==> default: Selecting previously unselected package cdbs. ==> default: Preparing to unpack .../cdbs_0.4.130ubuntu2_all.deb ... ==> default: Unpacking cdbs (0.4.130ubuntu2) ... ==> default: Selecting previously unselected package libgfortran3:amd64. ==> default: Preparing to unpack .../libgfortran3_5.3.1-14ubuntu2.1_amd64.deb ... ==> default: Unpacking libgfortran3:amd64 (5.3.1-14ubuntu2.1) ... ==> default: Selecting previously unselected package libgfortran-5-dev:amd64. ==> default: Preparing to unpack .../libgfortran-5-dev_5.3.1-14ubuntu2.1_amd64.deb ... ==> default: Unpacking libgfortran-5-dev:amd64 (5.3.1-14ubuntu2.1) ... ==> default: Selecting previously unselected package gfortran-5. ==> default: Preparing to unpack .../gfortran-5_5.3.1-14ubuntu2.1_amd64.deb ... ==> default: Unpacking gfortran-5 (5.3.1-14ubuntu2.1) ... ==> default: Selecting previously unselected package gfortran. ==> default: Preparing to unpack .../gfortran_4%3a5.3.1-1ubuntu1_amd64.deb ... ==> default: Unpacking gfortran (4:5.3.1-1ubuntu1) ... ==> default: Selecting previously unselected package icu-devtools. ==> default: Preparing to unpack .../icu-devtools_55.1-7_amd64.deb ... ==> default: Unpacking icu-devtools (55.1-7) ... ==> default: Selecting previously unselected package libblas-common. ==> default: Preparing to unpack .../libblas-common_3.6.0-2ubuntu2_amd64.deb ... ==> default: Unpacking libblas-common (3.6.0-2ubuntu2) ... ==> default: Selecting previously unselected package libblas3. ==> default: Preparing to unpack .../libblas3_3.6.0-2ubuntu2_amd64.deb ... ==> default: Unpacking libblas3 (3.6.0-2ubuntu2) ... ==> default: Selecting previously unselected package libblas-dev. ==> default: Preparing to unpack .../libblas-dev_3.6.0-2ubuntu2_amd64.deb ... ==> default: Unpacking libblas-dev (3.6.0-2ubuntu2) ... ==> default: Selecting previously unselected package libbz2-dev:amd64. ==> default: Preparing to unpack .../libbz2-dev_1.0.6-8_amd64.deb ... ==> default: Unpacking libbz2-dev:amd64 (1.0.6-8) ... ==> default: Selecting previously unselected package libicu-dev:amd64. ==> default: Preparing to unpack .../libicu-dev_55.1-7_amd64.deb ... ==> default: Unpacking libicu-dev:amd64 (55.1-7) ... ==> default: Selecting previously unselected package libjpeg-turbo8-dev:amd64. ==> default: Preparing to unpack .../libjpeg-turbo8-dev_1.4.2-0ubuntu3_amd64.deb ... ==> default: Unpacking libjpeg-turbo8-dev:amd64 (1.4.2-0ubuntu3) ... ==> default: Selecting previously unselected package libjpeg8-dev:amd64. ==> default: Preparing to unpack .../libjpeg8-dev_8c-2ubuntu8_amd64.deb ... ==> default: Unpacking libjpeg8-dev:amd64 (8c-2ubuntu8) ... ==> default: Selecting previously unselected package libjpeg-dev:amd64. ==> default: Preparing to unpack .../libjpeg-dev_8c-2ubuntu8_amd64.deb ... ==> default: Unpacking libjpeg-dev:amd64 (8c-2ubuntu8) ... ==> default: Selecting previously unselected package liblapack3. ==> default: Preparing to unpack .../liblapack3_3.6.0-2ubuntu2_amd64.deb ... ==> default: Unpacking liblapack3 (3.6.0-2ubuntu2) ... ==> default: Selecting previously unselected package liblapack-dev. ==> default: Preparing to unpack .../liblapack-dev_3.6.0-2ubuntu2_amd64.deb ... ==> default: Unpacking liblapack-dev (3.6.0-2ubuntu2) ... ==> default: Selecting previously unselected package libsys-hostname-long-perl. ==> default: Preparing to unpack .../libsys-hostname-long-perl_1.5-1_all.deb ... ==> default: Unpacking libsys-hostname-long-perl (1.5-1) ... ==> default: Selecting previously unselected package libmail-sendmail-perl. ==> default: Preparing to unpack .../libmail-sendmail-perl_0.79.16-1_all.deb ... ==> default: Unpacking libmail-sendmail-perl (0.79.16-1) ... ==> default: Selecting previously unselected package libtinfo-dev:amd64. ==> default: Preparing to unpack .../libtinfo-dev_6.0+20160213-1ubuntu1_amd64.deb ... ==> default: Unpacking libtinfo-dev:amd64 (6.0+20160213-1ubuntu1) ... ==> default: Selecting previously unselected package libncurses5-dev:amd64. ==> default: Preparing to unpack .../libncurses5-dev_6.0+20160213-1ubuntu1_amd64.deb ... ==> default: Unpacking libncurses5-dev:amd64 (6.0+20160213-1ubuntu1) ... ==> default: Selecting previously unselected package libpcre32-3:amd64. ==> default: Preparing to unpack .../libpcre32-3_2%3a8.38-3.1_amd64.deb ... ==> default: Unpacking libpcre32-3:amd64 (2:8.38-3.1) ... ==> default: Selecting previously unselected package libpcre3-dev:amd64. ==> default: Preparing to unpack .../libpcre3-dev_2%3a8.38-3.1_amd64.deb ... ==> default: Unpacking libpcre3-dev:amd64 (2:8.38-3.1) ... ==> default: Selecting previously unselected package zlib1g-dev:amd64. ==> default: Preparing to unpack .../zlib1g-dev_1%3a1.2.8.dfsg-2ubuntu4_amd64.deb ... ==> default: Unpacking zlib1g-dev:amd64 (1:1.2.8.dfsg-2ubuntu4) ... ==> default: Selecting previously unselected package libpng12-dev:amd64. ==> default: Preparing to unpack .../libpng12-dev_1.2.54-1ubuntu1_amd64.deb ... ==> default: Unpacking libpng12-dev:amd64 (1.2.54-1ubuntu1) ... ==> default: Selecting previously unselected package libreadline6-dev:amd64. ==> default: Preparing to unpack .../libreadline6-dev_6.3-8ubuntu2_amd64.deb ... ==> default: Unpacking libreadline6-dev:amd64 (6.3-8ubuntu2) ... ==> default: Selecting previously unselected package libreadline-dev:amd64. ==> default: Preparing to unpack .../libreadline-dev_6.3-8ubuntu2_amd64.deb ... ==> default: Unpacking libreadline-dev:amd64 (6.3-8ubuntu2) ... ==> default: Selecting previously unselected package r-base-core. ==> default: Preparing to unpack .../r-base-core_3.3.1-1trusty0_amd64.deb ... ==> default: Unpacking r-base-core (3.3.1-1trusty0) ... ==> default: Selecting previously unselected package r-cran-boot. ==> default: Preparing to unpack .../r-cran-boot_1.3-17-1trusty0_all.deb ... ==> default: Unpacking r-cran-boot (1.3-17-1trusty0) ... ==> default: Selecting previously unselected package r-cran-cluster. ==> default: Preparing to unpack .../r-cran-cluster_2.0.4-1trusty0_amd64.deb ... ==> default: Unpacking r-cran-cluster (2.0.4-1trusty0) ... ==> default: Selecting previously unselected package r-cran-foreign. ==> default: Preparing to unpack .../r-cran-foreign_0.8.66-1trusty0_amd64.deb ... ==> default: Unpacking r-cran-foreign (0.8.66-1trusty0) ... ==> default: Selecting previously unselected package r-cran-mass. ==> default: Preparing to unpack .../r-cran-mass_7.3-45-1_amd64.deb ... ==> default: Unpacking r-cran-mass (7.3-45-1) ... ==> default: Selecting previously unselected package r-cran-kernsmooth. ==> default: Preparing to unpack .../r-cran-kernsmooth_2.23-15-2trusty0_amd64.deb ... ==> default: Unpacking r-cran-kernsmooth (2.23-15-2trusty0) ... ==> default: Selecting previously unselected package r-cran-lattice. ==> default: Preparing to unpack .../r-cran-lattice_0.20-33-1trusty0_amd64.deb ... ==> default: Unpacking r-cran-lattice (0.20-33-1trusty0) ... ==> default: Selecting previously unselected package r-cran-nlme. ==> default: Preparing to unpack .../r-cran-nlme_3.1.128-2trusty0_amd64.deb ... ==> default: Unpacking r-cran-nlme (3.1.128-2trusty0) ... ==> default: Selecting previously unselected package r-cran-matrix. ==> default: Preparing to unpack .../r-cran-matrix_1.2-6-1trusty0_amd64.deb ... ==> default: Unpacking r-cran-matrix (1.2-6-1trusty0) ... ==> default: Selecting previously unselected package r-cran-mgcv. ==> default: Preparing to unpack .../r-cran-mgcv_1.8-12-1cran1trusty0_amd64.deb ... ==> default: Unpacking r-cran-mgcv (1.8-12-1cran1trusty0) ... ==> default: Selecting previously unselected package r-cran-survival. ==> default: Preparing to unpack .../r-cran-survival_2.39-4-2trusty0_amd64.deb ... ==> default: Unpacking r-cran-survival (2.39-4-2trusty0) ... ==> default: Selecting previously unselected package r-cran-rpart. ==> default: Preparing to unpack .../r-cran-rpart_4.1-10-1trusty0_amd64.deb ... ==> default: Unpacking r-cran-rpart (4.1-10-1trusty0) ... ==> default: Selecting previously unselected package r-cran-class. ==> default: Preparing to unpack .../r-cran-class_7.3-14-1trusty0_amd64.deb ... ==> default: Unpacking r-cran-class (7.3-14-1trusty0) ... ==> default: Selecting previously unselected package r-cran-nnet. ==> default: Preparing to unpack .../r-cran-nnet_7.3-12-1trusty0_amd64.deb ... ==> default: Unpacking r-cran-nnet (7.3-12-1trusty0) ... ==> default: Selecting previously unselected package r-cran-spatial. ==> default: Preparing to unpack .../r-cran-spatial_7.3-11-1_amd64.deb ... ==> default: Unpacking r-cran-spatial (7.3-11-1) ... ==> default: Selecting previously unselected package r-cran-codetools. ==> default: Preparing to unpack .../r-cran-codetools_0.2-14-2trusty0_all.deb ... ==> default: Unpacking r-cran-codetools (0.2-14-2trusty0) ... ==> default: Selecting previously unselected package r-recommended. ==> default: Preparing to unpack .../r-recommended_3.3.1-1trusty0_all.deb ... ==> default: Unpacking r-recommended (3.3.1-1trusty0) ... ==> default: Selecting previously unselected package r-base. ==> default: Preparing to unpack .../r-base_3.3.1-1trusty0_all.deb ... ==> default: Unpacking r-base (3.3.1-1trusty0) ... ==> default: Selecting previously unselected package liblzma-dev:amd64. ==> default: Preparing to unpack .../liblzma-dev_5.1.1alpha+20120614-2ubuntu2_amd64.deb ... ==> default: Unpacking liblzma-dev:amd64 (5.1.1alpha+20120614-2ubuntu2) ... ==> default: Selecting previously unselected package r-base-dev. ==> default: Preparing to unpack .../r-base-dev_3.3.1-1trusty0_all.deb ... ==> default: Unpacking r-base-dev (3.3.1-1trusty0) ... ==> default: Selecting previously unselected package r-doc-html. ==> default: Preparing to unpack .../r-doc-html_3.3.1-1trusty0_all.deb ... ==> default: Unpacking r-doc-html (3.3.1-1trusty0) ... ==> default: Selecting previously unselected package r-base-html. ==> default: Preparing to unpack .../r-base-html_3.3.1-1trusty0_all.deb ... ==> default: Unpacking r-base-html (3.3.1-1trusty0) ... ==> default: Processing triggers for libc-bin (2.23-0ubuntu3) ... ==> default: Processing triggers for install-info (6.1.0.dfsg.1-5) ... ==> default: Processing triggers for man-db (2.7.5-1) ... ==> default: Processing triggers for doc-base (0.10.7) ... ==> default: Processing 10 added doc-base files... ==> default: Processing triggers for hicolor-icon-theme (0.15-0ubuntu1) ... ==> default: Processing triggers for gnome-menus (3.13.3-6ubuntu3) ... ==> default: Processing triggers for desktop-file-utils (0.22-1ubuntu5) ... ==> default: Processing triggers for bamfdaemon (0.5.3~bzr0+16.04.20160523-0ubuntu1) ... ==> default: Rebuilding /usr/share/applications/bamf-2.index... ==> default: Processing triggers for mime-support (3.59ubuntu1) ... ==> default: Setting up libpcrecpp0v5:amd64 (2:8.38-3.1) ... ==> default: Setting up libsigsegv2:amd64 (2.10-4) ... ==> default: Setting up m4 (1.4.17-5) ... ==> default: Setting up autoconf (2.69-9) ... ==> default: Setting up autotools-dev (20150820.1) ... ==> default: Setting up automake (1:1.15-4ubuntu1) ... ==> default: update-alternatives: ==> default: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode ==> default: Setting up bzip2-doc (1.0.6-8) ... ==> default: Setting up po-debconf (1.0.19) ... ==> default: Setting up libfile-stripnondeterminism-perl (0.015-1) ... ==> default: Setting up intltool (0.51.0-2) ... ==> default: Setting up python-six (1.10.0-3) ... ==> default: Setting up python-pkg-resources (20.7.0-1) ... ==> default: Setting up python-scour (0.32-1) ... ==> default: Setting up libgfortran3:amd64 (5.3.1-14ubuntu2.1) ... ==> default: Setting up libgfortran-5-dev:amd64 (5.3.1-14ubuntu2.1) ... ==> default: Setting up gfortran-5 (5.3.1-14ubuntu2.1) ... ==> default: Setting up gfortran (4:5.3.1-1ubuntu1) ... ==> default: update-alternatives: ==> default: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode ==> default: update-alternatives: ==> default: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode ==> default: Setting up icu-devtools (55.1-7) ... ==> default: Setting up libblas-common (3.6.0-2ubuntu2) ... ==> default: Setting up libblas3 (3.6.0-2ubuntu2) ... ==> default: update-alternatives: ==> default: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode ==> default: Setting up libblas-dev (3.6.0-2ubuntu2) ... ==> default: update-alternatives: ==> default: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode ==> default: Setting up libbz2-dev:amd64 (1.0.6-8) ... ==> default: Setting up libicu-dev:amd64 (55.1-7) ... ==> default: Setting up libjpeg-turbo8-dev:amd64 (1.4.2-0ubuntu3) ... ==> default: Setting up libjpeg8-dev:amd64 (8c-2ubuntu8) ... ==> default: Setting up libjpeg-dev:amd64 (8c-2ubuntu8) ... ==> default: Setting up liblapack3 (3.6.0-2ubuntu2) ... ==> default: update-alternatives: ==> default: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode ==> default: Setting up liblapack-dev (3.6.0-2ubuntu2) ... ==> default: update-alternatives: ==> default: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode ==> default: Setting up libsys-hostname-long-perl (1.5-1) ... ==> default: Setting up libmail-sendmail-perl (0.79.16-1) ... ==> default: Setting up libtinfo-dev:amd64 (6.0+20160213-1ubuntu1) ... ==> default: Setting up libncurses5-dev:amd64 (6.0+20160213-1ubuntu1) ... ==> default: Setting up libpcre32-3:amd64 (2:8.38-3.1) ... ==> default: Setting up libpcre3-dev:amd64 (2:8.38-3.1) ... ==> default: Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-2ubuntu4) ... ==> default: Setting up libpng12-dev:amd64 (1.2.54-1ubuntu1) ... ==> default: Setting up libreadline6-dev:amd64 (6.3-8ubuntu2) ... ==> default: Setting up libreadline-dev:amd64 (6.3-8ubuntu2) ... ==> default: Setting up r-base-core (3.3.1-1trusty0) ... ==> default: Creating config file /etc/R/Renviron with new version ==> default: Setting up r-cran-boot (1.3-17-1trusty0) ... ==> default: Setting up r-cran-cluster (2.0.4-1trusty0) ... ==> default: Setting up r-cran-foreign (0.8.66-1trusty0) ... ==> default: Setting up r-cran-mass (7.3-45-1) ... ==> default: Setting up r-cran-kernsmooth (2.23-15-2trusty0) ... ==> default: Setting up r-cran-lattice (0.20-33-1trusty0) ... ==> default: Setting up r-cran-nlme (3.1.128-2trusty0) ... ==> default: Setting up r-cran-matrix (1.2-6-1trusty0) ... ==> default: Setting up r-cran-mgcv (1.8-12-1cran1trusty0) ... ==> default: Setting up r-cran-survival (2.39-4-2trusty0) ... ==> default: Setting up r-cran-rpart (4.1-10-1trusty0) ... ==> default: Setting up r-cran-class (7.3-14-1trusty0) ... ==> default: Setting up r-cran-nnet (7.3-12-1trusty0) ... ==> default: Setting up r-cran-spatial (7.3-11-1) ... ==> default: Setting up r-cran-codetools (0.2-14-2trusty0) ... ==> default: Setting up r-recommended (3.3.1-1trusty0) ... ==> default: Setting up r-base (3.3.1-1trusty0) ... ==> default: Setting up liblzma-dev:amd64 (5.1.1alpha+20120614-2ubuntu2) ... ==> default: Setting up r-doc-html (3.3.1-1trusty0) ... ==> default: Setting up r-base-html (3.3.1-1trusty0) ... ==> default: Setting up dh-strip-nondeterminism (0.015-1) ... ==> default: Setting up debhelper (9.20160115ubuntu3) ... ==> default: Setting up dh-translations (129) ... ==> default: Setting up cdbs (0.4.130ubuntu2) ... ==> default: Setting up r-base-dev (3.3.1-1trusty0) ... ==> default: Processing triggers for libc-bin (2.23-0ubuntu3) ... ==> default: Reading package lists... ==> default: Building dependency tree... ==> default: Reading state information... ==> default: r-base-dev is already the newest version (3.3.1-1trusty0). ==> default: r-base-dev set to manually installed. ==> default: 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. ==> default: Reading package lists... ==> default: Building dependency tree... ==> default: Reading state information... ==> default: The following additional packages will be installed: ==> default: git-man liberror-perl ==> default: Suggested packages: ==> default: git-daemon-run | git-daemon-sysvinit git-doc git-el git-email git-gui gitk ==> default: gitweb git-arch git-cvs git-mediawiki git-svn ==> default: The following NEW packages will be installed: ==> default: git git-man liberror-perl ==> default: 0 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. ==> default: Need to get 3,760 kB of archives. ==> default: After this operation, 25.6 MB of additional disk space will be used. ==> default: Get:1 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 liberror-perl all 0.17-1.2 [19.6 kB] ==> default: Get:2 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 git-man all 1:2.7.4-0ubuntu1 [735 kB] ==> default: Get:3 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 git amd64 1:2.7.4-0ubuntu1 [3,006 kB] ==> default: dpkg-preconfigure: unable to re-open stdin: No such file or directory ==> default: Fetched 3,760 kB in 2s (1,751 kB/s) ==> default: Selecting previously unselected package liberror-perl. ==> default: (Reading database ... ==> default: (Reading database ... 5% ==> default: (Reading database ... 10% ==> default: (Reading database ... 15% ==> default: (Reading database ... 20% ==> default: (Reading database ... 25% ==> default: (Reading database ... 30% ==> default: (Reading database ... 35% ==> default: (Reading database ... 40% ==> default: (Reading database ... 45% ==> default: (Reading database ... 50% ==> default: (Reading database ... 55% ==> default: (Reading database ... 60% ==> default: (Reading database ... 65% ==> default: (Reading database ... 70% ==> default: (Reading database ... 75% ==> default: (Reading database ... 80% ==> default: (Reading database ... 85% ==> default: (Reading database ... 90% ==> default: (Reading database ... 95% ==> default: (Reading database ... 100% ==> default: (Reading database ... ==> default: 211891 files and directories currently installed.) ==> default: Preparing to unpack .../liberror-perl_0.17-1.2_all.deb ... ==> default: Unpacking liberror-perl (0.17-1.2) ... ==> default: Selecting previously unselected package git-man. ==> default: Preparing to unpack .../git-man_1%3a2.7.4-0ubuntu1_all.deb ... ==> default: Unpacking git-man (1:2.7.4-0ubuntu1) ... ==> default: Selecting previously unselected package git. ==> default: Preparing to unpack .../git_1%3a2.7.4-0ubuntu1_amd64.deb ... ==> default: Unpacking git (1:2.7.4-0ubuntu1) ... ==> default: Processing triggers for man-db (2.7.5-1) ... ==> default: Setting up liberror-perl (0.17-1.2) ... ==> default: Setting up git-man (1:2.7.4-0ubuntu1) ... ==> default: Setting up git (1:2.7.4-0ubuntu1) ... ==> default: Reading package lists... ==> default: Building dependency tree... ==> default: Reading state information... ==> default: The following additional packages will be installed: ==> default: ca-certificates-java fonts-dejavu-extra java-common libbonobo2-0 ==> default: libbonobo2-common libgif7 libgnome-2-0 libgnome2-common libgnomevfs2-0 ==> default: libgnomevfs2-common liborbit-2-0 openjdk-8-jre-headless ==> default: Suggested packages: ==> default: default-jre libbonobo2-bin desktop-base libgnomevfs2-bin libgnomevfs2-extra ==> default: gamin | fam gnome-mime-data icedtea-8-plugin openjdk-8-jre-jamvm ==> default: fonts-ipafont-gothic fonts-ipafont-mincho ttf-wqy-microhei | ttf-wqy-zenhei ==> default: fonts-indic ==> default: The following NEW packages will be installed: ==> default: ca-certificates-java fonts-dejavu-extra java-common libbonobo2-0 ==> default: libbonobo2-common libgif7 libgnome-2-0 libgnome2-common libgnomevfs2-0 ==> default: libgnomevfs2-common liborbit-2-0 openjdk-8-jre openjdk-8-jre-headless ==> default: 0 upgraded, 13 newly installed, 0 to remove and 0 not upgraded. ==> default: Need to get 29.4 MB of archives. ==> default: After this operation, 111 MB of additional disk space will be used. ==> default: Get:1 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 libbonobo2-common all 2.32.1-3 [34.7 kB] ==> default: Get:2 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 liborbit-2-0 amd64 1:2.14.19-1build1 [140 kB] ==> default: Get:3 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 libbonobo2-0 amd64 2.32.1-3 [211 kB] ==> default: Get:4 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 ca-certificates-java all 20160321 [12.9 kB] ==> default: Get:5 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 java-common all 0.56ubuntu2 [7,742 B] ==> default: Get:6 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 openjdk-8-jre-headless amd64 8u91-b14-0ubuntu4~16.04.1 [26.9 MB] ==> default: Get:7 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 fonts-dejavu-extra all 2.35-1 [1,749 kB] ==> default: Get:8 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgif7 amd64 5.1.4-0.3~16.04 [30.5 kB] ==> default: Get:9 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 libgnomevfs2-common amd64 1:2.24.4-6.1ubuntu1 [23.0 kB] ==> default: Get:10 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 libgnomevfs2-0 amd64 1:2.24.4-6.1ubuntu1 [213 kB] ==> default: Get:11 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 libgnome2-common all 2.32.1-5ubuntu1 [33.5 kB] ==> default: Get:12 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 libgnome-2-0 amd64 2.32.1-5ubuntu1 [53.7 kB] ==> default: Get:13 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 openjdk-8-jre amd64 8u91-b14-0ubuntu4~16.04.1 [69.5 kB] ==> default: dpkg-preconfigure: unable to re-open stdin: No such file or directory ==> default: Fetched 29.4 MB in 17s (1,731 kB/s) ==> default: Selecting previously unselected package libbonobo2-common. ==> default: (Reading database ... ==> default: (Reading database ... 5% ==> default: (Reading database ... 10% ==> default: (Reading database ... 15% ==> default: (Reading database ... 20% ==> default: (Reading database ... 25% ==> default: (Reading database ... 30% ==> default: (Reading database ... 35% ==> default: (Reading database ... 40% ==> default: (Reading database ... 45% ==> default: (Reading database ... 50% ==> default: (Reading database ... 55% ==> default: (Reading database ... 60% ==> default: (Reading database ... 65% ==> default: (Reading database ... 70% ==> default: (Reading database ... 75% ==> default: (Reading database ... 80% ==> default: (Reading database ... 85% ==> default: (Reading database ... 90% ==> default: (Reading database ... 95% ==> default: (Reading database ... 100% ==> default: (Reading database ... ==> default: 212705 files and directories currently installed.) ==> default: Preparing to unpack .../libbonobo2-common_2.32.1-3_all.deb ... ==> default: Unpacking libbonobo2-common (2.32.1-3) ... ==> default: Selecting previously unselected package liborbit-2-0:amd64. ==> default: Preparing to unpack .../liborbit-2-0_1%3a2.14.19-1build1_amd64.deb ... ==> default: Unpacking liborbit-2-0:amd64 (1:2.14.19-1build1) ... ==> default: Selecting previously unselected package libbonobo2-0:amd64. ==> default: Preparing to unpack .../libbonobo2-0_2.32.1-3_amd64.deb ... ==> default: Unpacking libbonobo2-0:amd64 (2.32.1-3) ... ==> default: Selecting previously unselected package ca-certificates-java. ==> default: Preparing to unpack .../ca-certificates-java_20160321_all.deb ... ==> default: Unpacking ca-certificates-java (20160321) ... ==> default: Selecting previously unselected package java-common. ==> default: Preparing to unpack .../java-common_0.56ubuntu2_all.deb ... ==> default: Unpacking java-common (0.56ubuntu2) ... ==> default: Selecting previously unselected package openjdk-8-jre-headless:amd64. ==> default: Preparing to unpack .../openjdk-8-jre-headless_8u91-b14-0ubuntu4~16.04.1_amd64.deb ... ==> default: Unpacking openjdk-8-jre-headless:amd64 (8u91-b14-0ubuntu4~16.04.1) ... ==> default: Selecting previously unselected package fonts-dejavu-extra. ==> default: Preparing to unpack .../fonts-dejavu-extra_2.35-1_all.deb ... ==> default: Unpacking fonts-dejavu-extra (2.35-1) ... ==> default: Selecting previously unselected package libgif7:amd64. ==> default: Preparing to unpack .../libgif7_5.1.4-0.3~16.04_amd64.deb ... ==> default: Unpacking libgif7:amd64 (5.1.4-0.3~16.04) ... ==> default: Selecting previously unselected package libgnomevfs2-common. ==> default: Preparing to unpack .../libgnomevfs2-common_1%3a2.24.4-6.1ubuntu1_amd64.deb ... ==> default: Unpacking libgnomevfs2-common (1:2.24.4-6.1ubuntu1) ... ==> default: Selecting previously unselected package libgnomevfs2-0:amd64. ==> default: Preparing to unpack .../libgnomevfs2-0_1%3a2.24.4-6.1ubuntu1_amd64.deb ... ==> default: Unpacking libgnomevfs2-0:amd64 (1:2.24.4-6.1ubuntu1) ... ==> default: Selecting previously unselected package libgnome2-common. ==> default: Preparing to unpack .../libgnome2-common_2.32.1-5ubuntu1_all.deb ... ==> default: Unpacking libgnome2-common (2.32.1-5ubuntu1) ... ==> default: Selecting previously unselected package libgnome-2-0:amd64. ==> default: Preparing to unpack .../libgnome-2-0_2.32.1-5ubuntu1_amd64.deb ... ==> default: Unpacking libgnome-2-0:amd64 (2.32.1-5ubuntu1) ... ==> default: Selecting previously unselected package openjdk-8-jre:amd64. ==> default: Preparing to unpack .../openjdk-8-jre_8u91-b14-0ubuntu4~16.04.1_amd64.deb ... ==> default: Unpacking openjdk-8-jre:amd64 (8u91-b14-0ubuntu4~16.04.1) ... ==> default: Processing triggers for man-db (2.7.5-1) ... ==> default: Processing triggers for libc-bin (2.23-0ubuntu3) ... ==> default: Processing triggers for ca-certificates (20160104ubuntu1) ... ==> default: Updating certificates in /etc/ssl/certs... ==> default: 0 added, 0 removed; done. ==> default: Running hooks in /etc/ca-certificates/update.d... ==> default: done. ==> default: Processing triggers for fontconfig (2.11.94-0ubuntu1) ... ==> default: Processing triggers for gconf2 (3.2.6-3ubuntu6) ... ==> default: Processing triggers for gnome-menus (3.13.3-6ubuntu3) ... ==> default: Processing triggers for desktop-file-utils (0.22-1ubuntu5) ... ==> default: Processing triggers for bamfdaemon (0.5.3~bzr0+16.04.20160523-0ubuntu1) ... ==> default: Rebuilding /usr/share/applications/bamf-2.index... ==> default: Processing triggers for mime-support (3.59ubuntu1) ... ==> default: Processing triggers for hicolor-icon-theme (0.15-0ubuntu1) ... ==> default: Setting up libbonobo2-common (2.32.1-3) ... ==> default: Setting up liborbit-2-0:amd64 (1:2.14.19-1build1) ... ==> default: Setting up libbonobo2-0:amd64 (2.32.1-3) ... ==> default: Setting up java-common (0.56ubuntu2) ... ==> default: Setting up fonts-dejavu-extra (2.35-1) ... ==> default: Setting up libgif7:amd64 (5.1.4-0.3~16.04) ... ==> default: Setting up libgnomevfs2-common (1:2.24.4-6.1ubuntu1) ... ==> default: Setting up libgnomevfs2-0:amd64 (1:2.24.4-6.1ubuntu1) ... ==> default: Setting up libgnome2-common (2.32.1-5ubuntu1) ... ==> default: Setting up libgnome-2-0:amd64 (2.32.1-5ubuntu1) ... ==> default: Setting up ca-certificates-java (20160321) ... ==> default: Adding debian:SwissSign_Gold_CA_-_G2.pem ==> default: Adding debian:Swisscom_Root_CA_2.pem ==> default: Adding debian:GeoTrust_Universal_CA.pem ==> default: Adding debian:Microsec_e-Szigno_Root_CA_2009.pem ==> default: Adding debian:AffirmTrust_Commercial.pem ==> default: Adding debian:ApplicationCA_-_Japanese_Government.pem ==> default: Adding debian:TWCA_Global_Root_CA.pem ==> default: Adding debian:Swisscom_Root_EV_CA_2.pem ==> default: Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem ==> default: Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem ==> default: Adding debian:Visa_eCommerce_Root.pem ==> default: Adding debian:Root_CA_Generalitat_Valenciana.pem ==> default: Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem ==> default: Adding debian:Comodo_Secure_Services_root.pem ==> default: Adding debian:XRamp_Global_CA_Root.pem ==> default: Adding debian:TÜRKTRUST_Elektronik_Sertifika_Hizmet_Sağlayıcısı_H5.pem ==> default: Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem ==> default: Adding debian:Juur-SK.pem ==> default: Adding debian:Entrust_Root_Certification_Authority.pem ==> default: Adding debian:StartCom_Certification_Authority.pem ==> default: Adding debian:UTN_USERFirst_Hardware_Root_CA.pem ==> default: Adding debian:TURKTRUST_Certificate_Services_Provider_Root_2007.pem ==> default: Adding debian:TÜRKTRUST_Elektronik_Sertifika_Hizmet_Sağlayıcısı_H6.pem ==> default: Adding debian:StartCom_Certification_Authority_G2.pem ==> default: Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_2.pem ==> default: Adding debian:T-TeleSec_GlobalRoot_Class_2.pem ==> default: Adding debian:AffirmTrust_Networking.pem ==> default: Adding debian:Comodo_AAA_Services_root.pem ==> default: Adding debian:QuoVadis_Root_CA_3_G3.pem ==> default: Adding debian:Security_Communication_EV_RootCA1.pem ==> default: Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem ==> default: Adding debian:Staat_der_Nederlanden_Root_CA_-_G2.pem ==> default: Adding debian:AffirmTrust_Premium.pem ==> default: Adding debian:S-TRUST_Authentication_and_Encryption_Root_CA_2005_PN.pem ==> default: Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem ==> default: Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem ==> default: Adding debian:SwissSign_Platinum_CA_-_G2.pem ==> default: Adding debian:AffirmTrust_Premium_ECC.pem ==> default: Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority_-_G3.pem ==> default: Adding debian:CA_Disig.pem ==> default: Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem ==> default: Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem ==> default: Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem ==> default: Adding debian:thawte_Primary_Root_CA_-_G3.pem ==> default: Adding debian:AC_Raíz_Certicámara_S.A..pem ==> default: Adding debian:OISTE_WISeKey_Global_Root_GA_CA.pem ==> default: Adding debian:Hongkong_Post_Root_CA_1.pem ==> default: Adding debian:Camerfirma_Global_Chambersign_Root.pem ==> default: Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem ==> default: Adding debian:Starfield_Class_2_CA.pem ==> default: Adding debian:Buypass_Class_2_CA_1.pem ==> default: Adding debian:SwissSign_Silver_CA_-_G2.pem ==> default: Adding debian:thawte_Primary_Root_CA_-_G2.pem ==> default: Adding debian:QuoVadis_Root_CA_2.pem ==> default: Adding debian:GeoTrust_Global_CA_2.pem ==> default: Adding debian:Security_Communication_Root_CA.pem ==> default: Adding debian:CA_Disig_Root_R2.pem ==> default: Adding debian:NetLock_Business_=Class_B=_Root.pem ==> default: Adding debian:DigiCert_Assured_ID_Root_G2.pem ==> default: Adding debian:WoSign.pem ==> default: Adding debian:Equifax_Secure_eBusiness_CA_1.pem ==> default: Adding debian:Deutsche_Telekom_Root_CA_2.pem ==> default: Adding debian:thawte_Primary_Root_CA.pem ==> default: Adding debian:WoSign_China.pem ==> default: Adding debian:Chambers_of_Commerce_Root_-_2008.pem ==> default: Adding debian:Swisscom_Root_CA_1.pem ==> default: Adding debian:GeoTrust_Primary_Certification_Authority_-_G3.pem ==> default: Adding debian:certSIGN_ROOT_CA.pem ==> default: Adding debian:COMODO_RSA_Certification_Authority.pem ==> default: Adding debian:Trustis_FPS_Root_CA.pem ==> default: Adding debian:S-TRUST_Universal_Root_CA.pem ==> default: Adding debian:Certigna.pem ==> default: Adding debian:TÜBİTAK_UEKAE_Kök_Sertifika_Hizmet_Sağlayıcısı_-_Sürüm_3.pem ==> default: Adding debian:USERTrust_ECC_Certification_Authority.pem ==> default: Adding debian:Certum_Trusted_Network_CA.pem ==> default: Adding debian:ACEDICOM_Root.pem ==> default: Adding debian:Izenpe.com.pem ==> default: Adding debian:IGC_A.pem ==> default: Adding debian:DigiCert_Global_Root_CA.pem ==> default: Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem ==> default: Adding debian:CFCA_EV_ROOT.pem ==> default: Adding debian:AddTrust_Public_Services_Root.pem ==> default: Adding debian:AddTrust_External_Root.pem ==> default: Adding debian:Sonera_Class_2_Root_CA.pem ==> default: Adding debian:SecureSign_RootCA11.pem ==> default: Adding debian:Global_Chambersign_Root_-_2008.pem ==> default: Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem ==> default: Adding debian:IdenTrust_Commercial_Root_CA_1.pem ==> default: Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem ==> default: Adding debian:Network_Solutions_Certificate_Authority.pem ==> default: Adding debian:DigiCert_Global_Root_G3.pem ==> default: Adding debian:USERTrust_RSA_Certification_Authority.pem ==> default: Adding debian:Secure_Global_CA.pem ==> default: Adding debian:Equifax_Secure_CA.pem ==> default: Adding debian:TWCA_Root_Certification_Authority.pem ==> default: Adding debian:Security_Communication_RootCA2.pem ==> default: Adding debian:DST_ACES_CA_X6.pem ==> default: Adding debian:COMODO_Certification_Authority.pem ==> default: Adding debian:QuoVadis_Root_CA_1_G3.pem ==> default: Adding debian:Verisign_Class_2_Public_Primary_Certification_Authority_-_G2.pem ==> default: Adding debian:TeliaSonera_Root_CA_v1.pem ==> default: Adding debian:QuoVadis_Root_CA_3.pem ==> default: Adding debian:Buypass_Class_3_Root_CA.pem ==> default: Adding debian:Baltimore_CyberTrust_Root.pem ==> default: Adding debian:EE_Certification_Centre_Root_CA.pem ==> default: Adding debian:ePKI_Root_Certification_Authority.pem ==> default: Adding debian:SecureTrust_CA.pem ==> default: Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G2.pem ==> default: Adding debian:ComSign_CA.pem ==> default: Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem ==> default: Adding debian:GeoTrust_Universal_CA_2.pem ==> default: Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem ==> default: Adding debian:Equifax_Secure_Global_eBusiness_CA.pem ==> default: Adding debian:DigiCert_Global_Root_G2.pem ==> default: Adding debian:GeoTrust_Global_CA.pem ==> default: Adding debian:TC_TrustCenter_Class_3_CA_II.pem ==> default: Adding debian:Microsec_e-Szigno_Root_CA.pem ==> default: Adding debian:Verisign_Class_2_Public_Primary_Certification_Authority_-_G3.pem ==> default: Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority.pem ==> default: Adding debian:RSA_Security_2048_v3.pem ==> default: Adding debian:AddTrust_Qualified_Certificates_Root.pem ==> default: Adding debian:Comodo_Trusted_Services_root.pem ==> default: Adding debian:DigiCert_Trusted_Root_G4.pem ==> default: Adding debian:PSCProcert.pem ==> default: Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem ==> default: Adding debian:ssl-cert-snakeoil.pem ==> default: Adding debian:E-Tugra_Certification_Authority.pem ==> default: Adding debian:Staat_der_Nederlanden_Root_CA.pem ==> default: Adding debian:China_Internet_Network_Information_Center_EV_Certificates_Root.pem ==> default: Adding debian:COMODO_ECC_Certification_Authority.pem ==> default: Adding debian:DST_Root_CA_X3.pem ==> default: Adding debian:Actalis_Authentication_Root_CA.pem ==> default: Adding debian:WellsSecure_Public_Root_Certificate_Authority.pem ==> default: Adding debian:AddTrust_Low-Value_Services_Root.pem ==> default: Adding debian:NetLock_Qualified_=Class_QA=_Root.pem ==> default: Adding debian:Certinomis_-_Root_CA.pem ==> default: Adding debian:Certinomis_-_Autorité_Racine.pem ==> default: Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem ==> default: Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem ==> default: Adding debian:StartCom_Certification_Authority_2.pem ==> default: Adding debian:Sonera_Class_1_Root_CA.pem ==> default: Adding debian:DigiCert_Assured_ID_Root_G3.pem ==> default: Adding debian:GlobalSign_Root_CA_-_R2.pem ==> default: Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority.pem ==> default: Adding debian:UTN_USERFirst_Email_Root_CA.pem ==> default: Adding debian:CA_Disig_Root_R1.pem ==> default: Adding debian:NetLock_Express_=Class_C=_Root.pem ==> default: Adding debian:VeriSign_Universal_Root_Certification_Authority.pem ==> default: Adding debian:GlobalSign_Root_CA_-_R3.pem ==> default: Adding debian:Entrust_Root_Certification_Authority_-_G2.pem ==> default: Adding debian:Certification_Authority_of_WoSign_G2.pem ==> default: Adding debian:Taiwan_GRCA.pem ==> default: Adding debian:Cybertrust_Global_Root.pem ==> default: Adding debian:Buypass_Class_2_Root_CA.pem ==> default: Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem ==> default: Adding debian:Certum_Root_CA.pem ==> default: Adding debian:Camerfirma_Chambers_of_Commerce_Root.pem ==> default: Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem ==> default: Adding debian:ACCVRAIZ1.pem ==> default: Adding debian:Atos_TrustedRoot_2011.pem ==> default: Adding debian:Certplus_Class_2_Primary_CA.pem ==> default: Adding debian:QuoVadis_Root_CA_2_G3.pem ==> default: Adding debian:CA_WoSign_ECC_Root.pem ==> default: Adding debian:NetLock_Notary_=Class_A=_Root.pem ==> default: Adding debian:QuoVadis_Root_CA.pem ==> default: Adding debian:DigiCert_Assured_ID_Root_CA.pem ==> default: Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority_-_G2.pem ==> default: Adding debian:Go_Daddy_Class_2_CA.pem ==> default: Adding debian:GeoTrust_Primary_Certification_Authority.pem ==> default: Adding debian:CNNIC_ROOT.pem ==> default: Adding debian:EBG_Elektronik_Sertifika_Hizmet_Sağlayıcısı.pem ==> default: Adding debian:T-TeleSec_GlobalRoot_Class_3.pem ==> default: Adding debian:EC-ACC.pem ==> default: Adding debian:GlobalSign_Root_CA.pem ==> default: done. ==> default: Processing triggers for ca-certificates (20160104ubuntu1) ... ==> default: Updating certificates in /etc/ssl/certs... ==> default: 0 added, 0 removed; done. ==> default: Running hooks in /etc/ca-certificates/update.d... ==> default: done. ==> default: done. ==> default: Setting up openjdk-8-jre-headless:amd64 (8u91-b14-0ubuntu4~16.04.1) ... ==> default: update-alternatives: ==> default: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode ==> default: update-alternatives: ==> default: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/java to provide /usr/bin/java (java) in auto mode ==> default: update-alternatives: ==> default: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode ==> default: update-alternatives: ==> default: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/jjs to provide /usr/bin/jjs (jjs) in auto mode ==> default: update-alternatives: ==> default: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode ==> default: update-alternatives: ==> default: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode ==> default: update-alternatives: ==> default: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode ==> default: update-alternatives: ==> default: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/orbd to provide /usr/bin/orbd (orbd) in auto mode ==> default: update-alternatives: ==> default: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/servertool to provide /usr/bin/servertool (servertool) in auto mode ==> default: update-alternatives: ==> default: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/tnameserv to provide /usr/bin/tnameserv (tnameserv) in auto mode ==> default: update-alternatives: ==> default: using /usr/lib/jvm/java-8-openjdk-amd64/jre/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode ==> default: Setting up openjdk-8-jre:amd64 (8u91-b14-0ubuntu4~16.04.1) ... ==> default: update-alternatives: ==> default: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/policytool to provide /usr/bin/policytool (policytool) in auto mode ==> default: Processing triggers for libc-bin (2.23-0ubuntu3) ... ==> default: Reading package lists... ==> default: Building dependency tree... ==> default: Reading state information... ==> default: The following additional packages will be installed: ==> default: libice-dev libpthread-stubs0-dev libsm-dev libx11-dev libx11-doc libxau-dev ==> default: libxcb1-dev libxdmcp-dev libxt-dev openjdk-8-jdk-headless x11proto-core-dev ==> default: x11proto-input-dev x11proto-kb-dev xorg-sgml-doctools xtrans-dev ==> default: Suggested packages: ==> default: libice-doc libsm-doc libxcb-doc libxt-doc openjdk-8-demo openjdk-8-source ==> default: visualvm ==> default: The following NEW packages will be installed: ==> default: libice-dev libpthread-stubs0-dev libsm-dev libx11-dev libx11-doc libxau-dev ==> default: libxcb1-dev libxdmcp-dev libxt-dev openjdk-8-jdk openjdk-8-jdk-headless ==> default: x11proto-core-dev x11proto-input-dev x11proto-kb-dev xorg-sgml-doctools ==> default: xtrans-dev ==> default: 0 upgraded, 16 newly installed, 0 to remove and 0 not upgraded. ==> default: Need to get 11.9 MB of archives. ==> default: After this operation, 58.1 MB of additional disk space will be used. ==> default: Get:1 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 xorg-sgml-doctools all 1:1.11-1 [12.9 kB] ==> default: Get:2 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 x11proto-core-dev all 7.0.28-2ubuntu1 [254 kB] ==> default: Get:3 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 libice-dev amd64 2:1.0.9-1 [44.9 kB] ==> default: Get:4 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 libpthread-stubs0-dev amd64 0.3-4 [4,068 B] ==> default: Get:5 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 libsm-dev amd64 2:1.2.2-1 [16.2 kB] ==> default: Get:6 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 libxau-dev amd64 1:1.0.8-1 [11.1 kB] ==> default: Get:7 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 libxdmcp-dev amd64 1:1.1.2-1.1 [25.1 kB] ==> default: Get:8 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 x11proto-input-dev all 2.3.1-1 [118 kB] ==> default: Get:9 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 x11proto-kb-dev all 1.0.7-0ubuntu1 [224 kB] ==> default: Get:10 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 xtrans-dev all 1.3.5-1 [70.5 kB] ==> default: Get:11 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 libxcb1-dev amd64 1.11.1-1ubuntu1 [74.2 kB] ==> default: Get:12 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 libx11-dev amd64 2:1.6.3-1ubuntu2 [642 kB] ==> default: Get:13 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 libx11-doc all 2:1.6.3-1ubuntu2 [1,465 kB] ==> default: Get:14 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 libxt-dev amd64 1:1.1.5-0ubuntu1 [394 kB] ==> default: Get:15 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 openjdk-8-jdk-headless amd64 8u91-b14-0ubuntu4~16.04.1 [8,158 kB] ==> default: Get:16 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 openjdk-8-jdk amd64 8u91-b14-0ubuntu4~16.04.1 [429 kB] ==> default: dpkg-preconfigure: unable to re-open stdin: No such file or directory ==> default: Fetched 11.9 MB in 6s (1,797 kB/s) ==> default: Selecting previously unselected package xorg-sgml-doctools. ==> default: (Reading database ... ==> default: (Reading database ... 5% ==> default: (Reading database ... 10% ==> default: (Reading database ... 15% ==> default: (Reading database ... 20% ==> default: (Reading database ... 25% ==> default: (Reading database ... 30% ==> default: (Reading database ... 35% ==> default: (Reading database ... 40% ==> default: (Reading database ... 45% ==> default: (Reading database ... 50% ==> default: (Reading database ... 55% ==> default: (Reading database ... 60% ==> default: (Reading database ... 65% ==> default: (Reading database ... 70% ==> default: (Reading database ... 75% ==> default: (Reading database ... 80% ==> default: (Reading database ... 85% ==> default: (Reading database ... 90% ==> default: (Reading database ... 95% ==> default: (Reading database ... 100% ==> default: (Reading database ... ==> default: 213133 files and directories currently installed.) ==> default: Preparing to unpack .../xorg-sgml-doctools_1%3a1.11-1_all.deb ... ==> default: Unpacking xorg-sgml-doctools (1:1.11-1) ... ==> default: Selecting previously unselected package x11proto-core-dev. ==> default: Preparing to unpack .../x11proto-core-dev_7.0.28-2ubuntu1_all.deb ... ==> default: Unpacking x11proto-core-dev (7.0.28-2ubuntu1) ... ==> default: Selecting previously unselected package libice-dev:amd64. ==> default: Preparing to unpack .../libice-dev_2%3a1.0.9-1_amd64.deb ... ==> default: Unpacking libice-dev:amd64 (2:1.0.9-1) ... ==> default: Selecting previously unselected package libpthread-stubs0-dev:amd64. ==> default: Preparing to unpack .../libpthread-stubs0-dev_0.3-4_amd64.deb ... ==> default: Unpacking libpthread-stubs0-dev:amd64 (0.3-4) ... ==> default: Selecting previously unselected package libsm-dev:amd64. ==> default: Preparing to unpack .../libsm-dev_2%3a1.2.2-1_amd64.deb ... ==> default: Unpacking libsm-dev:amd64 (2:1.2.2-1) ... ==> default: Selecting previously unselected package libxau-dev:amd64. ==> default: Preparing to unpack .../libxau-dev_1%3a1.0.8-1_amd64.deb ... ==> default: Unpacking libxau-dev:amd64 (1:1.0.8-1) ... ==> default: Selecting previously unselected package libxdmcp-dev:amd64. ==> default: Preparing to unpack .../libxdmcp-dev_1%3a1.1.2-1.1_amd64.deb ... ==> default: Unpacking libxdmcp-dev:amd64 (1:1.1.2-1.1) ... ==> default: Selecting previously unselected package x11proto-input-dev. ==> default: Preparing to unpack .../x11proto-input-dev_2.3.1-1_all.deb ... ==> default: Unpacking x11proto-input-dev (2.3.1-1) ... ==> default: Selecting previously unselected package x11proto-kb-dev. ==> default: Preparing to unpack .../x11proto-kb-dev_1.0.7-0ubuntu1_all.deb ... ==> default: Unpacking x11proto-kb-dev (1.0.7-0ubuntu1) ... ==> default: Selecting previously unselected package xtrans-dev. ==> default: Preparing to unpack .../xtrans-dev_1.3.5-1_all.deb ... ==> default: Unpacking xtrans-dev (1.3.5-1) ... ==> default: Selecting previously unselected package libxcb1-dev:amd64. ==> default: Preparing to unpack .../libxcb1-dev_1.11.1-1ubuntu1_amd64.deb ... ==> default: Unpacking libxcb1-dev:amd64 (1.11.1-1ubuntu1) ... ==> default: Selecting previously unselected package libx11-dev:amd64. ==> default: Preparing to unpack .../libx11-dev_2%3a1.6.3-1ubuntu2_amd64.deb ... ==> default: Unpacking libx11-dev:amd64 (2:1.6.3-1ubuntu2) ... ==> default: Selecting previously unselected package libx11-doc. ==> default: Preparing to unpack .../libx11-doc_2%3a1.6.3-1ubuntu2_all.deb ... ==> default: Unpacking libx11-doc (2:1.6.3-1ubuntu2) ... ==> default: Selecting previously unselected package libxt-dev:amd64. ==> default: Prepari ==> default: ng to unpack .../libxt-dev_1%3a1.1.5-0ubuntu1_amd64.deb ... ==> default: ==> default: Unpacking libxt-dev:amd64 (1:1.1.5-0ubuntu1) ... ==> default: Selecting previously unselected package openjdk-8-jdk-headless:amd64. ==> default: Preparing to unpack .../openjdk-8-jdk-headless_8u91-b14-0ubuntu4~16.04.1_amd64.deb ... ==> default: Unpacking openjdk-8-jdk-headless:amd64 (8u91-b14-0ubuntu4~16.04.1) ... ==> default: Selecting previously unselected package openjdk-8-jdk:amd64. ==> default: Preparing to unpack .../openjdk-8-jdk_8u91-b14-0ubuntu4~16.04.1_amd64.deb ... ==> default: Unpacking openjdk-8-jdk:amd64 (8u91-b14-0ubuntu4~16.04.1) ... ==> default: Processing triggers for man-db (2.7.5-1) ... ==> default: Setting up xorg-sgml-doctools (1:1.11-1) ... ==> default: Setting up x11proto-core-dev (7.0.28-2ubuntu1) ... ==> default: Setting up libice-dev:amd64 (2:1.0.9-1) ... ==> default: Setting up libpthread-stubs0-dev:amd64 (0.3-4) ... ==> default: Setting up libsm-dev:amd64 (2:1.2.2-1) ... ==> default: Setting up libxau-dev:amd64 (1:1.0.8-1) ... ==> default: Setting up libxdmcp-dev:amd64 (1:1.1.2-1.1) ... ==> default: Setting up x11proto-input-dev (2.3.1-1) ... ==> default: Setting up x11proto-kb-dev (1.0.7-0ubuntu1) ... ==> default: Setting up xtrans-dev (1.3.5-1) ... ==> default: Setting up libxcb1-dev:amd64 (1.11.1-1ubuntu1) ... ==> default: Setting up libx11-dev:amd64 (2:1.6.3-1ubuntu2) ... ==> default: Setting up libx11-doc (2:1.6.3-1ubuntu2) ... ==> default: Setting up libxt-dev:amd64 (1:1.1.5-0ubuntu1) ... ==> default: Setting up openjdk-8-jdk-headless:amd64 (8u91-b14-0ubuntu4~16.04.1) ... ==> default: update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode ==> default: update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/wsimport to provide /usr/bin/wsimport (wsimport) in auto mode ==> default: update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/rmic to provide /usr/bin/rmic (rmic) in auto mode ==> default: update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode ==> default: update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/jsadebugd to provide /usr/bin/jsadebugd (jsadebugd) in auto mode ==> default: update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/native2ascii to provide /usr/bin/native2ascii (native2ascii) in auto mode ==> default: update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode ==> default: update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode ==> default: update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/javah to provide /usr/bin/javah (javah) in auto mode ==> default: update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/idlj to provide /usr/bin/idlj (idlj) in auto mode ==> default: update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode ==> default: update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode ==> default: update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/javac to provide /usr/bin/javac (javac) in auto mode ==> default: update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/jhat to provide /usr/bin/jhat (jhat) in auto mode ==> default: update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/javap to provide /usr/bin/javap (javap) in auto mode ==> default: update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/jar to provide /usr/bin/jar (jar) in auto mode ==> default: update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/extcheck to provide /usr/bin/extcheck (extcheck) in auto mode ==> default: update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/schemagen to provide /usr/bin/schemagen (schemagen) in auto mode ==> default: update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/jps to provide /usr/bin/jps (jps) in auto mode ==> default: update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/xjc to provide /usr/bin/xjc (xjc) in auto mode ==> default: update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode ==> default: update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode ==> default: update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode ==> default: update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode ==> default: update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode ==> default: update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/wsgen to provide /usr/bin/wsgen (wsgen) in auto mode ==> default: update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode ==> default: Setting up openjdk-8-jdk:amd64 (8u91-b14-0ubuntu4~16.04.1) ... ==> default: update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/appletviewer to provide /usr/bin/appletviewer (appletviewer) in auto mode ==> default: update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode ==> default: Reading package lists... ==> default: Building dependency tree... ==> default: Reading state information... ==> default: The following additional packages will be installed: ==> default: ant-optional ==> default: Suggested packages: ==> default: ant-doc ant-gcj ant-optional-gcj antlr javacc junit jython libbcel-java ==> default: libbsf-java libcommons-logging-java libcommons-net-java libgnumail-java ==> default: libjaxp1.3-java libjdepend-java libjsch-java liblog4j1.2-java liboro-java ==> default: libregexp-java libxalan2-java libxml-commons-resolver1.1-java ==> default: The following NEW packages will be installed: ==> default: ant ant-optional ==> default: 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. ==> default: Need to get 2,205 kB of archives. ==> default: After this operation, 3,108 kB of additional disk space will be used. ==> default: Get:1 http://us.archive.ubuntu.com/ubuntu xenial/universe amd64 ant all 1.9.6-1ubuntu1 [1,892 kB] ==> default: Get:2 http://us.archive.ubuntu.com/ubuntu xenial/universe amd64 ant-optional all 1.9.6-1ubuntu1 [313 kB] ==> default: Fetched 2,205 kB in 1s (1,626 kB/s) ==> default: Selecting previously unselected package ant. (Reading database ... 214679 files and directories currently installed.) ==> default: Preparing to unpack .../ant_1.9.6-1ubuntu1_all.deb ... ==> default: Unpacking ant (1.9.6-1ubuntu1) ... ==> default: Selecting previously unselected package ant-optional. ==> default: Preparing to unpack .../ant-optional_1.9.6-1ubuntu1_all.deb ... ==> default: Unpacking ant-optional (1.9.6-1ubuntu1) ... ==> default: Processing triggers for man-db (2.7.5-1) ... ==> default: Setting up ant (1.9.6-1ubuntu1) ... ==> default: Setting up ant-optional (1.9.6-1ubuntu1) ... ==> default: Reading package lists... ==> default: Building dependency tree... ==> default: Reading state information... ==> default: Suggested packages: ==> default: libcurl4-doc libcurl3-dbg libgnutls-dev libidn11-dev libkrb5-dev ==> default: libldap2-dev librtmp-dev ==> default: The following NEW packages will be installed: ==> default: libcurl4-gnutls-dev ==> default: 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. ==> default: Need to get 260 kB of archives. ==> default: After this operation, 1,247 kB of additional disk space will be used. ==> default: Get:1 http://us.archive.ubuntu.com/ubuntu xenial/main amd64 libcurl4-gnutls-dev amd64 7.47.0-1ubuntu2 [260 kB] ==> default: Fetched 260 kB in 0s (977 kB/s) ==> default: Selecting previously unselected package libcurl4-gnutls-dev:amd64. (Reading database ... 214917 files and directories currently installed.) ==> default: Preparing to unpack .../libcurl4-gnutls-dev_7.47.0-1ubuntu2_amd64.deb ... ==> default: Unpacking libcurl4-gnutls-dev:amd64 (7.47.0-1ubuntu2) ... ==> default: Processing triggers for man-db (2.7.5-1) ... ==> default: Setting up libcurl4-gnutls-dev:amd64 (7.47.0-1ubuntu2) ... ==> default: Reading package lists... ==> default: Building dependency tree... ==> default: Reading state information... ==> default: The following NEW packages will be installed: ==> default: libxml2-dev ==> default: 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. ==> default: Need to get 743 kB of archives. ==> default: After this operation, 3,507 kB of additional disk space will be used. ==> default: Get:1 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libxml2-dev amd64 2.9.3+dfsg1-1ubuntu0.1 [743 kB] ==> default: Fetched 743 kB in 0s (1,079 kB/s) ==> default: Selecting previously unselected package libxml2-dev:amd64. (Reading database ... 214941 files and directories currently installed.) ==> default: Preparing to unpack .../libxml2-dev_2.9.3+dfsg1-1ubuntu0.1_amd64.deb ... ==> default: Unpacking libxml2-dev:amd64 (2.9.3+dfsg1-1ubuntu0.1) ... ==> default: Processing triggers for man-db (2.7.5-1) ... ==> default: Setting up libxml2-dev:amd64 (2.9.3+dfsg1-1ubuntu0.1) ... ==> default: Reading package lists... ==> default: Building dependency tree... ==> default: Reading state information... ==> default: The following additional packages will be installed: ==> default: libssl-doc ==> default: The following NEW packages will be installed: ==> default: libssl-dev libssl-doc ==> default: 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. ==> default: Need to get 2,472 kB of archives. ==> default: After this operation, 10.3 MB of additional disk space will be used. ==> default: Get:1 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libssl-dev amd64 1.0.2g-1ubuntu4.1 [1,394 kB] ==> default: Get:2 http://us.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libssl-doc all 1.0.2g-1ubuntu4.1 [1,078 kB] ==> default: Fetched 2,472 kB in 1s (1,357 kB/s) ==> default: Selecting previously unselected package libssl-dev:amd64. (Reading database ... 215005 files and directories currently installed.) ==> default: Preparing to unpack .../libssl-dev_1.0.2g-1ubuntu4.1_amd64.deb ... ==> default: Unpacking libssl-dev:amd64 (1.0.2g-1ubuntu4.1) ... ==> default: Selecting previously unselected package libssl-doc. ==> default: Preparing to unpack .../libssl-doc_1.0.2g-1ubuntu4.1_all.deb ... ==> default: Unpacking libssl-doc (1.0.2g-1ubuntu4.1) ... ==> default: Processing triggers for man-db (2.7.5-1) ... ==> default: Setting up libssl-dev:amd64 (1.0.2g-1ubuntu4.1) ... ==> default: Setting up libssl-doc (1.0.2g-1ubuntu4.1) ... ==> default: Reading package lists... ==> default: Building dependency tree... ==> default: Reading state information... ==> default: The following NEW packages will be installed: ==> default: libjpeg62 ==> default: 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. ==> default: Need to get 78.9 kB of archives. ==> default: After this operation, 188 kB of additional disk space will be used. ==> default: Get:1 http://us.archive.ubuntu.com/ubuntu xenial/universe amd64 libjpeg62 amd64 1:6b2-2 [78.9 kB] ==> default: Fetched 78.9 kB in 0s (429 kB/s) ==> default: Selecting previously unselected package libjpeg62:amd64. (Reading database ... 216769 files and directories currently installed.) ==> default: Preparing to unpack .../libjpeg62_1%3a6b2-2_amd64.deb ... ==> default: Unpacking libjpeg62:amd64 (1:6b2-2) ... ==> default: Setting up libjpeg62:amd64 (1:6b2-2) ... ==> default: Processing triggers for libc-bin (2.23-0ubuntu3) ... ==> default: Reading package lists... ==> default: Building dependency tree... ==> default: Reading state information... ==> default: Suggested packages: ==> default: gstreamer0.10-tools gstreamer0.10-plugins-base ==> default: The following NEW packages will be installed: ==> default: libgstreamer0.10-0 ==> default: 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. ==> default: Need to get 646 kB of archives. ==> default: After this operation, 2,724 kB of additional disk space will be used. ==> default: Get:1 http://us.archive.ubuntu.com/ubuntu xenial/universe amd64 libgstreamer0.10-0 amd64 0.10.36-1.5ubuntu1 [646 kB] ==> default: Fetched 646 kB in 0s (743 kB/s) ==> default: Selecting previously unselected package libgstreamer0.10-0:amd64. (Reading database ... 216776 files and directories currently installed.) ==> default: Preparing to unpack .../libgstreamer0.10-0_0.10.36-1.5ubuntu1_amd64.deb ... ==> default: Unpacking libgstreamer0.10-0:amd64 (0.10.36-1.5ubuntu1) ... ==> default: Setting up libgstreamer0.10-0:amd64 (0.10.36-1.5ubuntu1) ... ==> default: Processing triggers for libc-bin (2.23-0ubuntu3) ... ==> default: Reading package lists... ==> default: Building dependency tree... ==> default: Reading state information... ==> default: Suggested packages: ==> default: libvisual-0.4-plugins ==> default: The following NEW packages will be installed: ==> default: libgstreamer-plugins-base0.10-0 ==> default: 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. ==> default: Need to get 443 kB of archives. ==> default: After this operation, 1,507 kB of additional disk space will be used. ==> default: Get:1 http://us.archive.ubuntu.com/ubuntu xenial/universe amd64 libgstreamer-plugins-base0.10-0 amd64 0.10.36-2 [443 kB] ==> default: Fetched 443 kB in 0s (808 kB/s) ==> default: Selecting previously unselected package libgstreamer-plugins-base0.10-0:amd64. (Reading database ... 216801 files and directories currently installed.) ==> default: Preparing to unpack .../libgstreamer-plugins-base0.10-0_0.10.36-2_amd64.deb ... ==> default: Unpacking libgstreamer-plugins-base0.10-0:amd64 (0.10.36-2) ... ==> default: Setting up libgstreamer-plugins-base0.10-0:amd64 (0.10.36-2) ... ==> default: Processing triggers for libc-bin (2.23-0ubuntu3) ... ==> default: Selecting previously unselected package rstudio. ==> default: (Reading database ... 216835 files and directories currently installed.) ==> default: Preparing to unpack .../rstudio-0.99.902-amd64.deb ... ==> default: Unpacking rstudio (0.99.902) ... ==> default: Setting up rstudio (0.99.902) ... ==> default: Processing triggers for shared-mime-info (1.5-2ubuntu0.1) ... ==> default: Processing triggers for hicolor-icon-theme (0.15-0ubuntu1) ... ==> default: Processing triggers for gnome-menus (3.13.3-6ubuntu3) ... ==> default: Processing triggers for desktop-file-utils (0.22-1ubuntu5) ... ==> default: Processing triggers for bamfdaemon (0.5.3~bzr0+16.04.20160523-0ubuntu1) ... ==> default: Rebuilding /usr/share/applications/bamf-2.index... ==> default: Processing t ==> default: dpkg-preconfigure: unable to re-open stdin: No such file or directory ==> default: dpkg-preconfigure: unable to re-open stdin: No such file or directory ==> default: dpkg-preconfigure: unable to re-open stdin: No such file or directory ==> default: dpkg-preconfigure: unable to re-open stdin: No such file or directory ==> default: dpkg-preconfigure: unable to re-open stdin: No such file or directory ==> default: dpkg-preconfigure: unable to re-open stdin: No such file or directory ==> default: dpkg-preconfigure: unable to re-open stdin: No such file or directory ==> default: mesg: ttyname failed: Inappropriate ioctl for device ==> default: Installing package into ‘/usr/local/lib/R/site-library’ ==> default: (as ‘lib’ is unspecified) ==> default: Warning: dependency ‘BiocInstaller’ is not available ==> default: also installing the dependencies ‘dichromat’, ‘munsell’, ‘labeling’, ‘xtable’, ‘iterators’, ‘gtable’, ‘plyr’, ‘scales’, ‘pkgmaker’, ‘registry’, ‘rngtools’, ‘gridBase’, ‘colorspace’, ‘RColorBrewer’, ‘foreach’, ‘doParallel’, ‘ggplot2’, ‘reshape2’, ‘lazyeval’, ‘NMF’, ‘irlba’, ‘BH’, ‘mime’, ‘openssl’, ‘R6’, ‘praise’, ‘magrittr’, ‘yaml’, ‘htmltools’, ‘caTools’, ‘formatR’, ‘highr’, ‘markdown’, ‘stringr’, ‘rex’, ‘stringdist’, ‘igraph’, ‘stringi’, ‘brew’, ‘xml2’, ‘base64enc’, ‘httr’, ‘memoise’, ‘whisker’, ‘digest’, ‘rstudioapi’, ‘jsonlite’, ‘git2r’, ‘withr’, ‘curl’, ‘crayon’, ‘testthat’, ‘Rcpp’, ‘rmarkdown’, ‘knitr’, ‘hunspell’, ‘lintr’, ‘bitops’, ‘roxygen2’, ‘evaluate’, ‘rversions’, ‘covr’, ‘gmailr’ ==> default: ==> default: trying URL 'http://cran.rstudio.com/src/contrib/dichromat_2.0-0.tar.gz' ==> default: Content type 'application/x-gzip' length 84320 bytes (82 KB) ==> default: ================================================== ==> default: downloaded 82 KB ==> default: ==> default: trying URL 'http://cran.rstudio.com/src/contrib/munsell_0.4.3.tar.gz' ==> default: Content type 'application/x-gzip' length 97244 bytes (94 KB) ==> default: ================================================== ==> default: downloaded 94 KB ==> default: ==> default: trying URL 'http://cran.rstudio.com/src/contrib/labeling_0.3.tar.gz' ==> default: Content type 'application/x-gzip' length 10722 bytes (10 KB) ==> default: ================================================== ==> default: downloaded 10 KB ==> default: ==> default: trying URL 'http://cran.rstudio.com/src/contrib/xtable_1.8-2.tar.gz' ==> default: Content type 'application/x-gzip' length 619611 bytes (605 KB) ==> default: ================================================== ==> default: downloaded 605 KB ==> default: ==> default: trying URL 'http://cran.rstudio.com/src/contrib/iterators_1.0.8.tar.gz' ==> default: Content type 'application/x-gzip' length 290412 bytes (283 KB) ==> default: ================================================== ==> default: downloaded 283 KB ==> default: ==> default: trying URL 'http://cran.rstudio.com/src/contrib/gtable_0.2.0.tar.gz' ==> default: Content type 'application/x-gzip' length 24157 bytes (23 KB) ==> default: ================================================== ==> default: downloaded 23 KB ==> default: ==> default: trying URL 'http://cran.rstudio.com/src/contrib/plyr_1.8.4.tar.gz' ==> default: Content type 'application/x-gzip' length 392451 bytes (383 KB) ==> default: ================================================== ==> default: downloaded 383 KB ==> default: ==> default: trying URL 'http://cran.rstudio.com/src/contrib/scales_0.4.0.tar.gz' ==> default: Content type 'application/x-gzip' length 57358 bytes (56 KB) ==> default: ================================================== ==> default: downloaded 56 KB ==> default: ==> default: trying URL 'http://cran.rstudio.com/src/contrib/pkgmaker_0.22.tar.gz' ==> default: Content type 'application/x-gzip' length 351479 bytes (343 KB) ==> default: ================================================== ==> default: downloaded 343 KB ==> default: ==> default: trying URL 'http://cran.rstudio.com/src/contrib/registry_0.3.tar.gz' ==> default: Content type 'application/x-gzip' length 177554 bytes (173 KB) ==> default: ================================================== ==> default: downloaded 173 KB ==> default: ==> default: trying URL 'http://cran.rstudio.com/src/contrib/rngtools_1.2.4.tar.gz' ==> default: Content type 'application/x-gzip' length 120986 bytes (118 KB) ==> default: ================================================== ==> default: downloaded 118 KB ==> default: ==> default: trying URL 'http://cran.rstudio.com/src/contrib/gridBase_0.4-7.tar.gz' ==> default: Content type 'application/x-gzip' length 153373 bytes (149 KB) ==> default: ================================================== ==> default: downloaded 149 KB ==> default: ==> default: trying URL 'http://cran.rstudio.com/src/contrib/colorspace_1.2-6.tar.gz' ==> default: Content type 'application/x-gzip' length 247027 bytes (241 KB) ==> default: ================================================== ==> default: downloaded 241 KB ==> default: ==> default: trying URL 'http://cran.rstudio.com/src/contrib/RColorBrewer_1.1-2.tar.gz' ==> default: Content type 'application/x-gzip' length 11532 bytes (11 KB) ==> default: ================================================== ==> default: downloaded 11 KB ==> default: ==> default: trying URL 'http://cran.rstudio.com/src/contrib/foreach_1.4.3.tar.gz' ==> default: Content type 'application/x-gzip' length 359787 bytes (351 KB) ==> default: ================================================== ==> default: downloaded 351 KB ==> default: ==> default: trying URL 'http://cran.rstudio.com/src/contrib/doParallel_1.0.10.tar.gz' ==> default: Content type 'application/x-gzip' length 173022 bytes (168 KB) ==> default: 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unpacked and MD5 sums checked ==> default: ** R ==> default: ** data ==> default: ** preparing package for lazy loading ==> default: ** help ==> default: *** installing help indices ==> default: ** building package indices ==> default: ** testing if installed package can be loaded ==> default: * DONE (dichromat) ==> default: * installing *source* package ‘labeling’ ... ==> default: ** package ‘labeling’ successfully unpacked and MD5 sums checked ==> default: ** R ==> default: ** preparing package for lazy loading ==> default: ** help ==> default: *** installing help indices ==> default: ** building package indices ==> default: ** testing if installed package can be loaded ==> default: * DONE (labeling) ==> default: * installing *source* package ‘xtable’ ... ==> default: ** package ‘xtable’ successfully unpacked and MD5 sums checked ==> default: ** R ==> default: ** data ==> default: ** inst ==> default: ** preparing package for lazy loading ==> default: ** help ==> default: *** installing help indices ==> default: ** building package indices ==> default: ** installing vignettes ==> default: ** testing if installed package can be loaded ==> default: * DONE (xtable) ==> default: * installing *source* package ‘iterators’ ... ==> default: ** package ‘iterators’ successfully unpacked and MD5 sums checked ==> default: ** R ==> default: ** inst ==> default: ** preparing package for lazy loading ==> default: ** help ==> default: *** installing help indices ==> default: ** building package indices ==> default: ** installing vignettes ==> default: ** testing if installed package can be loaded ==> default: * DONE (iterators) ==> default: * installing *source* package ‘gtable’ ... ==> default: ** package ‘gtable’ successfully unpacked and MD5 sums checked ==> default: ** R ==> default: ** preparing package for lazy loading ==> default: ** help ==> default: *** installing help indices ==> default: ** building package indices ==> default: ** testing if installed package can be loaded ==> default: * DONE (gtable) ==> default: * installing *source* package ‘registry’ ... ==> default: ** package ‘registry’ successfully unpacked and MD5 sums checked ==> default: ** R ==> default: ** demo ==> default: ** inst ==> default: ** preparing package for lazy loading ==> default: ** help ==> default: *** installing help indices ==> default: ** building package indices ==> default: ** installing vignettes ==> default: ** testing if installed package can be loaded ==> default: * DONE (registry) ==> default: * installing *source* package ==> default: riggers for mime-support (3.59ubuntu1) ... ==> default: Reading package lists... ==> default: Building dependency tree... ==> default: Reading state information... ==> default: 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. ==> default: Generating locales (this might take a while)... ==> default: en_AG.UTF-8... done ==> default: en_AU.UTF-8... done ==> default: en_BW.UTF-8... done ==> default: en_CA.UTF-8... done ==> default: en_DK.UTF-8... done ==> default: en_GB.UTF-8... done ==> default: en_HK.UTF-8... done ==> default: en_IE.UTF-8... done ==> default: en_IN.UTF-8... done ==> default: en_NG.UTF-8... done ==> default: en_NZ.UTF-8... done ==> default: en_PH.UTF-8... done ==> default: en_SG.UTF-8... done ==> default: en_US.ISO-8859-1... done ==> default: en_US.UTF-8... done ==> default: en_ZA.UTF-8... done ==> default: en_ZM.UTF-8... done ==> default: en_ZW.UTF-8... done ==> default: Generation complete. ==> default: Installing RDataTracker... ==> default: ==> default: R version 3.3.1 (2016-06-21) -- "Bug in Your Hair" ==> default: Copyright (C) 2016 The R Foundation for Statistical Computing ==> default: Platform: x86_64-pc-linux-gnu (64-bit) ==> default: ==> default: R is free software and comes with ABSOLUTELY NO WARRANTY. ==> default: You are welcome to redistribute it under certain conditions. ==> default: Type 'license()' or 'licence()' for distribution details. ==> default: ==> default: Natural language support but running in an English locale ==> default: ==> default: R is a collaborative project with many contributors. ==> default: Type 'contributors()' for more information and ==> default: 'citation()' on how to cite R or R packages in publications. ==> default: ==> default: Type 'demo()' for some demos, 'help()' for on-line help, or ==> default: 'help.start()' for an HTML browser interface to help. ==> default: Type 'q()' to quit R. ==> default: ==> default: > install.packages('devtools', repos='http://cran.rstudio.com/', dependencies = TRUE) ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c colorspace.c -o colorspace.o ==> default: gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o colorspace.so colorspace.o -L/usr/lib/R/lib -lR ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c expr.c -o expr.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c interp.c -o interp.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c lazy.c -o lazy.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c name.c -o name.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c utils.c -o utils.o ==> default: gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o lazyeval.so expr.o interp.o lazy.o name.o utils.o -L/usr/lib/R/lib -lR ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rawmatch.c -o rawmatch.o ==> default: gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o mime.so rawmatch.o -L/usr/lib/R/lib -lR ==> default: Found pkg-config cflags and libs! ==> default: Using PKG_CFLAGS= ==> default: Using PKG_LIBS=-lssl -lcrypto ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c aes.c -o aes.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c base64.c -o base64.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c bignum.c -o bignum.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cert.c -o cert.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c diffie.c -o diffie.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c envelope.c -o envelope.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c error.c -o error.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c hash.c -o hash.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c info.c -o info.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c keygen.c -o keygen.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c onload.c -o onload.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c openssh.c -o openssh.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rand.c -o rand.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c read.c -o read.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rsa.c -o rsa.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c signing.c -o signing.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ssl.c -o ssl.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stream.c -o stream.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c write.c -o write.o ==> default: gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o openssl.so aes.o base64.o bignum.o cert.o diffie.o envelope.o error.o hash.o info.o keygen.o onload.o openssh.o rand.o read.o rsa.o signing.o ssl.o stream.o write.o -lssl -lcrypto -L/usr/lib/R/lib -lR ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c api.c -o api.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dumper.c -o dumper.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c emitter.c -o emitter.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c implicit.c -o implicit.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c loader.c -o loader.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c parser.c -o parser.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c r-ext.c -o r-ext.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c reader.c -o reader.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c scanner.c -o scanner.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c writer.c -o writer.o ==> default: gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o yaml.so api.o dumper.o emitter.o implicit.o loader.o parser.o r-ext.o reader.o scanner.o writer.o -L/usr/lib/R/lib -lR ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fopenmp -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Rstringdist.c -o Rstringdist.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fopenmp -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dl.c -o dl.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fopenmp -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c hamming.c -o hamming.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fopenmp -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c jaro.c -o jaro.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fopenmp -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c lcs.c -o lcs.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fopenmp -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c lv.c -o lv.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fopenmp -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c osa.c -o osa.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fopenmp -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qgram.c -o qgram.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fopenmp -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c soundex.c -o soundex.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fopenmp -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stringdist.c -o stringdist.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fopenmp -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c utf8ToInt.c -o utf8ToInt.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fopenmp -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c utils.c -o utils.o ==> default: gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o stringdist.so Rstringdist.o dl.o hamming.o jaro.o lcs.o lv.o osa.o qgram.o soundex.o stringdist.o utf8ToInt.o utils.o -fopenmp -L/usr/lib/R/lib -lR ==> default: checking for local ICUDT_DIR... icu55/data ==> default: checking for R_HOME... /usr/lib/R ==> default: checking for R... /usr/lib/R/bin/R ==> default: checking for R >= 3.1.0... yes ==> default: checking for cat... /bin/cat ==> default: checking for gcc... gcc -std=gnu99 ==> default: checking whether the C compiler works... yes ==> default: checking for C compiler default output file name... a.out ==> default: checking for suffix of executables... ==> default: checking whether we are cross compiling... no ==> default: checking for suffix of object files... o ==> default: checking whether we are using the GNU C compiler... yes ==> default: checking whether gcc -std=gnu99 accepts -g... yes ==> default: checking for gcc -std=gnu99 option to accept ISO C89... none needed ==> default: checking how to run the C preprocessor... g++ -E ==> default: checking for grep that handles long lines and -e... /bin/grep ==> default: checking for egrep... /bin/grep -E ==> default: checking for ANSI C header files... yes ==> default: checking for sys/types.h... yes ==> default: checking for sys/stat.h... yes ==> default: checking for stdlib.h... yes ==> default: checking for string.h... yes ==> default: checking for memory.h... yes ==> default: checking for strings.h... yes ==> default: checking for inttypes.h... yes ==> default: checking for stdint.h... yes ==> default: checking for unistd.h... yes ==> default: checking elf.h usability... yes ==> default: checking elf.h presence... yes ==> default: checking for elf.h... yes ==> default: checking whether we are using the GNU C++ compiler... yes ==> default: checking whether g++ -std=c++11 accepts -g... yes ==> default: checking whether the C++ compiler supports the long long type... yes ==> default: checking whether the compiler implements namespaces... yes ==> default: checking whether the compiler supports Standard Template Library... yes ==> default: checking whether std::map is available... yes ==> default: checking for pkg-config... /usr/bin/pkg-config ==> default: checking with pkg-config for ICU4C installed... 55.1 ==> default: checking for ICU4C >= 50... yes ==> default: checking for proper CPPFLAGS, LDFLAGS, and LIBS... done ==> default: checking whether we may build an ICU-based project... yes ==> default: checking for available ICU data library (ucnv, uloc, utrans)... yes ==> default: checking for available ICU data library (ucol)... yes ==> default: configure: creating ./config.status ==> default: config.status: creating src/Makevars ==> default: config.status: creating src/uconfig_local.h ==> default: config.status: creating src/install.libs.R ==> default: ==> default: *** stringi configure summary: ==> default: ICU_FOUND=1 ==> default: ICUDT_DIR=icu55/data ==> default: STRINGI_CXXSTD=CXX_STD=CXX11 ==> default: STRINGI_CFLAGS= ==> default: STRINGI_CPPFLAGS=-I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H ==> default: STRINGI_CXXFLAGS= ==> default: STRINGI_LDFLAGS=-L/usr/lib/x86_64-linux-gnu ==> default: STRINGI_LIBS=-licui18n -licuuc -licudata ==> default: ==> default: *** compiler settings used: ==> default: CC=gcc -std=gnu99 ==> default: CPP=g++ -E ==> default: LD=g++ ==> default: CFLAGS=-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g ==> default: CPPFLAGS= -UDEBUG -DNDEBUG ==> default: CXX=g++ -std=c++11 ==> default: CXXFLAGS=-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g ==> default: LDFLAGS= ==> default: LIBS= ==> default: ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_brkiter.cpp -o stri_brkiter.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_collator.cpp -o stri_collator.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_common.cpp -o stri_common.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_compare.cpp -o stri_compare.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_container_base.cpp -o stri_container_base.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_c ==> default: gridBase’ ... ==> default: ** package ‘gridBase’ successfully unpacked and MD5 sums checked ==> default: ** R ==> default: ** demo ==> default: ** inst ==> default: ** preparing package for lazy loading ==> default: ** help ==> default: *** installing help indices ==> default: ** building package indices ==> default: ** installing vignettes ==> default: ** testing if installed package can be loaded ==> default: * DONE (gridBase) ==> default: * installing *source* package ‘colorspace’ ... ==> default: ** package ‘colorspace’ successfully unpacked and MD5 sums checked ==> default: ** libs ==> default: installing to /usr/local/lib/R/site-library/colorspace/libs ==> default: ** R ==> default: ** data ==> default: *** moving datasets to lazyload DB ==> default: ** inst ==> default: ** preparing package for lazy loading ==> default: Creating a generic function for ‘plot’ from package ‘graphics’ in package ‘colorspace’ ==> default: ** help ==> default: *** installing help indices ==> default: ** building package indices ==> default: ** installing vignettes ==> default: ** testing if installed package can be loaded ==> default: * DONE (colorspace) ==> default: * installing *source* package ‘RColorBrewer’ ... ==> default: ** package ‘RColorBrewer’ successfully unpacked and MD5 sums checked ==> default: ** R ==> default: ** inst ==> default: ** preparing package for lazy loading ==> default: ** help ==> default: *** installing help indices ==> default: ** building package indices ==> default: ** testing if installed package can be loaded ==> default: * DONE (RColorBrewer) ==> default: * installing *source* package ‘lazyeval’ ... ==> default: ** package ‘lazyeval’ successfully unpacked and MD5 sums checked ==> default: ** libs ==> default: installing to /usr/local/lib/R/site-library/lazyeval/libs ==> default: ** R ==> default: ** inst ==> default: ** preparing package for lazy loading ==> default: ** help ==> default: *** installing help indices ==> default: ** building package indices ==> default: ** installing vignettes ==> default: ** testing if installed package can be loaded ==> default: * DONE (lazyeval) ==> default: * installing *source* package ‘irlba’ ... ==> default: ** package ‘irlba’ successfully unpacked and MD5 sums checked ==> default: ** R ==> default: ** inst ==> default: ** preparing package for lazy loading ==> default: ** help ==> default: *** installing help indices ==> default: ** building package indices ==> default: ** installing vignettes ==> default: ** testing if installed package can be loaded ==> default: * DONE (irlba) ==> default: * installing *source* package ‘BH’ ... ==> default: ** package ‘BH’ successfully unpacked and MD5 sums checked ==> default: ** inst ==> default: ** help ==> default: *** installing help indices ==> default: ** building package indices ==> default: ** testing if installed package can be loaded ==> default: * DONE (BH) ==> default: * installing *source* package ‘mime’ ... ==> default: ** package ‘mime’ successfully unpacked and MD5 sums checked ==> default: ** libs ==> default: installing to /usr/local/lib/R/site-library/mime/libs ==> default: ** R ==> default: ** preparing package for lazy loading ==> default: ** help ==> default: *** installing help indices ==> default: ** building package indices ==> default: ** testing if installed package can be loaded ==> default: * DONE (mime) ==> default: * installing *source* package ‘openssl’ ... ==> default: ** package ‘openssl’ successfully unpacked and MD5 sums checked ==> default: ** libs ==> default: installing to /usr/local/lib/R/site-library/openssl/libs ==> default: ** R ==> default: ** inst ==> default: ** preparing package for lazy loading ==> default: ** help ==> default: *** installing help indices ==> default: ** building package indices ==> default: ** installing vignettes ==> default: ** testing if installed package can be loaded ==> default: * DONE (openssl) ==> default: * installing *source* package ‘R6’ ... ==> default: ** package ‘R6’ successfully unpacked and MD5 sums checked ==> default: ** R ==> default: ** inst ==> default: ** preparing package for lazy loading ==> default: ** help ==> default: *** installing help indices ==> default: ** building package indices ==> default: ** installing vignettes ==> default: ** testing if installed package can be loaded ==> default: * DONE (R6) ==> default: * installing *source* package ‘praise’ ... ==> default: ** package ‘praise’ successfully unpacked and MD5 sums checked ==> default: ** R ==> default: ** inst ==> default: ** preparing package for lazy loading ==> default: ** help ==> default: *** installing help indices ==> default: ** building package indices ==> default: ** testing if installed package can be loaded ==> default: * DONE (praise) ==> default: * installing *source* package ‘magrittr’ ... ==> default: ** package ‘magrittr’ successfully unpacked and MD5 sums checked ==> default: ** R ==> default: ** inst ==> default: ** byte-compile and prepare package for lazy loading ==> default: ** help ==> default: *** installing help indices ==> default: ** building package indices ==> default: ** installing vignettes ==> default: ** testing if installed package can be loaded ==> default: * DONE (magrittr) ==> default: * installing *source* package ‘yaml’ ... ==> default: ** package ‘yaml’ successfully unpacked and MD5 sums checked ==> default: ** libs ==> default: installing to /usr/local/lib/R/site-library/yaml/libs ==> default: ** R ==> default: ** inst ==> default: ** preparing package for lazy loading ==> default: ** help ==> default: *** installing help indices ==> default: ** building package indices ==> default: ** testing if installed package can be loaded ==> default: * DONE (yaml) ==> default: * installing *source* package ‘formatR’ ... ==> default: ** package ‘formatR’ successfully unpacked and MD5 sums checked ==> default: ** R ==> default: ** inst ==> default: ** preparing package for lazy loading ==> default: ** help ==> default: *** installing help indices ==> default: ** building package indices ==> default: ** installing vignettes ==> default: ** testing if installed package can be loaded ==> default: * DONE (formatR) ==> default: * installing *source* package ‘highr’ ... ==> default: ** package ‘highr’ successfully unpacked and MD5 sums checked ==> default: ** R ==> default: ** inst ==> default: ** preparing package for lazy loading ==> default: ** help ==> default: *** installing help indices ==> default: ** building package indices ==> default: ** installing vignettes ==> default: ** testing if installed package can be loaded ==> default: * DONE (highr) ==> default: * installing *source* package ‘stringdist’ ... ==> default: ** package ‘stringdist’ successfully unpacked and MD5 sums checked ==> default: ** libs ==> default: installing to /usr/local/lib/R/site-library/stringdist/libs ==> default: ** R ==> default: ** inst ==> default: ** preparing package for lazy loading ==> default: ** help ==> default: *** installing help indices ==> default: ** building package indices ==> default: ** testing if installed package can be loaded ==> default: * DONE (stringdist) ==> default: * installing *source* package ‘stringi’ ... ==> default: ** package ‘stringi’ successfully unpacked and MD5 sums checked ==> default: ** libs ==> default: installing via 'install.libs.R' to /usr/local/lib/R/site-library/stringi ==> default: ** R ==> default: ** inst ==> default: ** preparing package for lazy loading ==> default: ** help ==> default: *** installing help indices ==> default: ** building package indices ==> default: ** testing if installed package can be loaded ==> default: * DONE (stringi) ==> default: * installing *source* package ‘brew’ ... ==> default: ** R ==> default: ** inst ==> default: ** preparing package for lazy loading ==> default: ** help ==> default: *** installing help indices ==> default: ** building package indices ==> default: ** testing if installed package can be loaded ==> default: * DONE (brew) ==> default: * installing *source* package ‘base64enc’ ... ==> default: ** package ‘base64enc’ successfully unpacked and MD5 sums checked ==> default: ** libs ==> default: installing to /usr/local/lib/R/site-library/base64enc/libs ==> default: ** R ==> default: ** preparing package for lazy loading ==> default: ** help ==> default: *** installing help indices ==> default: ** building package indices ==> default: ** testing if installed package can be loaded ==> default: * DONE (base64enc) ==> default: * installing *source* package ‘whisker’ ... ==> default: ** package ‘whisker’ successfully unpacked and MD5 sums checked ==> default: ** R ==> default: ** inst ==> default: ** preparing package for lazy loading ==> default: ** help ==> default: *** installing help indices ==> default: ** building package indices ==> default: ** testing if installed package can be loaded ==> default: * DONE (whisker) ==> default: * installing *source* package ‘digest’ ... ==> default: ** package ‘digest’ successfully unpacked and MD5 sums checked ==> default: ** libs ==> default: installing to /usr/local/lib/R/site-library/digest/libs ==> default: ** R ==> default: ** inst ==> default: ** preparing package for lazy loading ==> default: ** help ==> default: *** installing help indices ==> default: ** building package indices ==> default: ** installing vignettes ==> default: ** testing if installed package can be loaded ==> default: * DONE (digest) ==> default: * installing *source* package ‘rstudioapi’ ... ==> default: ** package ‘rstudioapi’ successfully unpacked and MD5 sums checked ==> default: ** R ==> default: ** inst ==> default: ** preparing package for lazy loading ==> default: ** help ==> default: *** installing help indices ==> default: ** building package indices ==> default: ** testing if installed package can be loaded ==> default: * DONE (rstudioapi) ==> default: * installing *source* package ‘jsonlite’ ... ==> default: ** package ‘jsonlite’ successfully unpacked and MD5 sums checked ==> default: ** libs ==> default: ontainer_bytesearch.cpp -o stri_container_bytesearch.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_container_listint.cpp -o stri_container_listint.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_container_listraw.cpp -o stri_container_listraw.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_container_listutf8.cpp -o stri_container_listutf8.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_container_regex.cpp -o stri_container_regex.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_container_usearch.cpp -o stri_container_usearch.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_container_utf16.cpp -o stri_container_utf16.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_container_utf8.cpp -o stri_container_utf8.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_container_utf8_indexable.cpp -o stri_container_utf8_indexable.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_encoding_conversion.cpp -o stri_encoding_conversion.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_encoding_detection.cpp -o stri_encoding_detection.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_encoding_management.cpp -o stri_encoding_management.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_escape.cpp -o stri_escape.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_exception.cpp -o stri_exception.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_ICU_settings.cpp -o stri_ICU_settings.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_join.cpp -o stri_join.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_length.cpp -o stri_length.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_pad.cpp -o stri_pad.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_prepare_arg.cpp -o stri_prepare_arg.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_random.cpp -o stri_random.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_reverse.cpp -o stri_reverse.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_search_class_count.cpp -o stri_search_class_count.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_search_class_detect.cpp -o stri_search_class_detect.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_search_class_extract.cpp -o stri_search_class_extract.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_search_class_locate.cpp -o stri_search_class_locate.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_search_class_replace.cpp -o stri_search_class_replace.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_search_class_split.cpp -o stri_search_class_split.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_search_class_startsendswith.cpp -o stri_search_class_startsendswith.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_search_class_subset.cpp -o stri_search_class_subset.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_search_class_trim.cpp -o stri_search_class_trim.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_search_common.cpp -o stri_search_common.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_search_coll_count.cpp -o stri_search_coll_count.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_search_coll_detect.cpp -o stri_search_coll_detect.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_search_coll_extract.cpp -o stri_search_coll_extract.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_search_coll_locate.cpp -o stri_search_coll_locate.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_search_coll_replace.cpp -o stri_search_coll_replace.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_search_coll_split.cpp -o stri_search_coll_split.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_search_coll_startsendswith.cpp -o stri_search_coll_startsendswith.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_search_coll_subset.cpp -o stri_search_coll_subset.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_search_boundaries_count.cpp -o stri_search_boundaries_count.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_search_boundaries_extract.cpp -o stri_search_boundaries_extract.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_search_boundaries_locate.cpp -o stri_search_boundaries_locate.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_search_boundaries_split.cpp -o stri_search_boundaries_split.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_search_fixed_count.cpp -o stri_search_fixed_count.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_search_fixed_detect.cpp -o stri_search_fixed_detect.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_search_fixed_extract.cpp -o stri_search_fixed_extract.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_search_fixed_locate.cpp -o stri_search_fixed_locate.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_search_fixed_replace.cpp -o stri_search_fixed_replace.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_search_fixed_split.cpp -o stri_search_fixed_split.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_search_fixed_subset.cpp -o stri_search_fixed_subset.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_search_fixed_startsendswith.cpp -o stri_search_fixed_startsendswith.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_search_in.cpp -o stri_search_in.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_search_other_replace.cpp -o stri_search_other_replace.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_search_other_split.cpp -o stri_search_other_split.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_search_regex_count.cpp -o stri_search_regex_count.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_search_regex_detect.cpp -o stri_search_regex_detect.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_search_regex_extract. ==> default: cpp -o stri_search_regex_extract.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_search_regex_locate.cpp -o stri_search_regex_locate.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_search_regex_match.cpp -o stri_search_regex_match.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_search_regex_replace.cpp -o stri_search_regex_replace.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_search_regex_split.cpp -o stri_search_regex_split.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_search_regex_subset.cpp -o stri_search_regex_subset.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_sort.cpp -o stri_sort.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_stats.cpp -o stri_stats.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_stringi.cpp -o stri_stringi.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_sub.cpp -o stri_sub.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_test.cpp -o stri_test.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_time_zone.cpp -o stri_time_zone.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_time_calendar.cpp -o stri_time_calendar.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_time_symbols.cpp -o stri_time_symbols.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_time_format.cpp -o stri_time_format.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_trans_casemap.cpp -o stri_trans_casemap.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_trans_other.cpp -o stri_trans_other.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_trans_normalization.cpp -o stri_trans_normalization.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_trans_transliterate.cpp -o stri_trans_transliterate.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_ucnv.cpp -o stri_ucnv.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_uloc.cpp -o stri_uloc.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_utils.cpp -o stri_utils.o ==> default: g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stri_wrap.cpp -o stri_wrap.o ==> default: g++ -std=c++11 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o stringi.so stri_brkiter.o stri_collator.o stri_common.o stri_compare.o stri_container_base.o stri_container_bytesearch.o stri_container_listint.o stri_container_listraw.o stri_container_listutf8.o stri_container_regex.o stri_container_usearch.o stri_container_utf16.o stri_container_utf8.o stri_container_utf8_indexable.o stri_encoding_conversion.o stri_encoding_detection.o stri_encoding_management.o stri_escape.o stri_exception.o stri_ICU_settings.o stri_join.o stri_length.o stri_pad.o stri_prepare_arg.o stri_random.o stri_reverse.o stri_search_class_count.o stri_search_class_detect.o stri_search_class_extract.o stri_search_class_locate.o stri_search_class_replace.o stri_search_class_split.o stri_search_class_startsendswith.o stri_search_class_subset.o stri_search_class_trim.o stri_search_common.o stri_search_coll_count.o stri_search_coll_detect.o stri_search_coll_extract.o stri_search_coll_locate.o stri_search_coll_replace.o stri_search_coll_split.o stri_search_coll_startsendswith.o stri_search_coll_subset.o stri_search_boundaries_count.o stri_search_boundaries_extract.o stri_search_boundaries_locate.o stri_search_boundaries_split.o stri_search_fixed_count.o stri_search_fixed_detect.o stri_search_fixed_extract.o stri_search_fixed_locate.o stri_search_fixed_replace.o stri_search_fixed_split.o stri_search_fixed_subset.o stri_search_fixed_startsendswith.o stri_search_in.o stri_search_other_replace.o stri_search_other_split.o stri_search_regex_count.o stri_search_regex_detect.o stri_search_regex_extract.o stri_search_regex_locate.o stri_search_regex_match.o stri_search_regex_replace.o stri_search_regex_split.o stri_search_regex_subset.o stri_sort.o stri_stats.o stri_stringi.o stri_sub.o stri_test.o stri_time_zone.o stri_time_calendar.o stri_time_symbols.o stri_time_format.o stri_trans_casemap.o stri_trans_other.o stri_trans_normalization.o stri_trans_transliterate.o stri_ucnv.o stri_uloc.o stri_utils.o stri_wrap.o -L/usr/lib/x86_64-linux-gnu -licui18n -licuuc -licudata -L/usr/lib/R/lib -lR ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c base64.c -o base64.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c uriencode.c -o uriencode.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c utf8.c -o utf8.o ==> default: gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o base64enc.so base64.o uriencode.o utf8.o -L/usr/lib/R/lib -lR ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c aes.c -o aes.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c crc32.c -o crc32.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c digest.c -o digest.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c md5.c -o md5.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pmurhash.c -o pmurhash.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c raes.c -o raes.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c sha1.c -o sha1.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c sha2.c -o sha2.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c sha256.c -o sha256.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c xxhash.c -o xxhash.o ==> default: gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o digest.so aes.o crc32.o digest.o init.o md5.o pmurhash.o raes.o sha1.o sha2.o sha256.o xxhash.o -L/usr/lib/R/lib -lR ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c base64.c -o base64.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c collapse_array.c -o collapse_array.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c collapse_object.c -o collapse_object.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c collapse_pretty.c -o collapse_pretty.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c escape_chars.c -o escape_chars.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c integer64_to_na.c -o integer64_to_na.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c is_recordlist.c -o is_recordlist.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c is_scalarlist.c -o is_scalarlist.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c modp_numtoa.c -o modp_numtoa.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c null_to_na.c -o null_to_na.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c num_to_char.c -o num_to_char.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c parse.c -o parse.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c prettify.c -o prettify.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c push_parser.c -o push_parser.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c r-base64.c -o r-base64.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c row_collapse.c -o row_collapse.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c validate.c -o validate.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c yajl/yajl.c -o yajl/yajl.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_alloc.c -o yajl/yajl_alloc.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_buf.c -o yajl/yajl_buf.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_encode.c -o yajl/yajl_encode.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_gen.c -o yajl/yajl_gen.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_lex.c -o yajl/yajl_lex.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_parser.c -o yajl/yajl_parser.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_tree.c -o yajl/yajl_tree.o ==> default: ar rcs libstatyajl.a yajl/yajl.o yajl/yajl_alloc.o yajl/yajl_buf.o yajl/yajl_encode.o yajl/yajl_gen.o yajl/yajl_lex.o yajl/yajl_parser.o yajl/yajl_tree.o ==> default: gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o jsonlite.so base64.o collapse_array.o collapse_object.o collapse_pretty.o escape_chars.o integer64_to_na.o is_recordlist.o is_scalarlist.o modp_numtoa.o null_to_na.o num_to_char.o parse.o prettify.o push_parser.o r-base64.o row_collapse.o validate.o -L. -lstatyajl -L/usr/lib/R/lib -lR ==> default: installing to /usr/local/lib/R/site-library/jsonlite/libs ==> default: ** R ==> default: ** inst ==> default: ** preparing package for lazy loading ==> default: ** help ==> default: *** installing help indices ==> default: ** building package indices ==> default: ** installing vignettes ==> default: ** testing if installed package can be loaded ==> default: * DONE (jsonlite) ==> default: * installing *source* package ‘git2r’ ... ==> default: ** package ‘git2r’ successfully unpacked and MD5 sums checked ==> default: checking build system type... ==> default: x86_64-unknown-linux-gnu ==> default: checking host system type... ==> default: x86_64-unknown-linux-gnu ==> default: checking for gcc... ==> default: gcc ==> default: checking whether the C compiler works... ==> default: yes ==> default: checking for C compiler default output file name... ==> default: a.out ==> default: checking for suffix of executables... ==> default: checking whether we are cross compiling... ==> default: no ==> default: checking for suffix of object files... ==> default: o ==> default: checking whether we are using the GNU C compiler... ==> default: yes ==> default: checking whether gcc accepts -g... ==> default: yes ==> default: checking for gcc option to accept ISO C89... ==> default: none needed ==> default: checking for library containing inflate... ==> default: -lz ==> default: checking for pkg-config... ==> default: /usr/bin/pkg-config ==> default: checking pkg-config is at least version 0.9.0... ==> default: yes ==> default: checking for libssl... ==> default: yes ==> default: checking for library containing EVP_EncryptInit... ==> default: -lcrypto ==> default: checking for library containing SSL_library_init... ==> default: none required ==> default: checking for library containing libssh2_version... ==> default: no ==> default: configure: WARNING: ==> default: --------------------------------------------- ==> default: Unable to find the LibSSH2 library on this ==> default: system. Building a version without support ==> default: for SSH transport. ==> default: ==> default: To build with SSH support, please install: ==> default: libssh2-1-dev (package on e.g. Debian and Ubuntu) ==> default: libssh2-devel (package on e.g. Fedora, CentOS and RHEL) ==> default: libssh2 (Homebrew package on OS X) ==> default: and try again. ==> default: ==> default: If the LibSSH2 library is installed on ==> default: your system but the git2r configuration ==> default: is unable to find it, you can specify ==> default: the include and lib path to LibSSH2 with: ==> default: R CMD INSTALL --configure-args='--with-libssh2-include=INCLUDE_PATH --with-libssh2-lib=LIB_PATH' git2r ==> default: --------------------------------------------- ==> default: checking for gawk... ==> default: no ==> default: checking for mawk... ==> default: mawk ==> default: checking for curl-config... ==> default: /usr/bin/curl-config ==> default: checking for the version of libcurl... ==> default: 7.47.0 ==> default: checking whether libcurl is usable... ==> default: yes ==> default: checking for curl_free... ==> default: yes ==> default: checking for ANSI C header files... ==> default: no ==> default: checking for sys/types.h... ==> default: yes ==> default: checking for sys/stat.h... ==> default: yes ==> default: checking for stdlib.h... ==> default: yes ==> default: checking for string.h... ==> default: yes ==> default: checking for memory.h... ==> default: yes ==> default: checking for strings.h... ==> default: yes ==> default: checking for inttypes.h... ==> default: yes ==> default: checking for stdint.h... ==> default: yes ==> default: checking for unistd.h... ==> default: yes ==> default: checking size of void*... ==> default: 8 ==> default: checking for struct stat.st_atimespec... ==> default: no ==> default: checking for futimens... ==> default: yes ==> default: checking for qsort_r... ==> default: yes ==> default: checking for qsort_s... ==> default: no ==> default: checking if '-Wno-unused-function' is supported... ==> default: yes ==> default: ==> default: ----- Results of the git2r package configure ----- ==> default: ==> default: OpenSSL to talk over HTTPS...........: yes ==> default: LibSSH2 to enable the SSH transport..: no ==> default: ==> default: -------------------------------------------------- ==> default: configure: creating ./config.status ==> default: config.status: creating src/Makevars ==> default: ** libs ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c git2r.c -o git2r.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c git2r_arg.c -o git2r_arg.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c git2r_blame.c -o git2r_blame.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c git2r_blob.c -o git2r_blob.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c git2r_branch.c -o git2r_branch.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c git2r_checkout.c -o git2r_checkout.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c git2r_clone.c -o git2r_clone.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c git2r_commit.c -o git2r_commit.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c git2r_config.c -o git2r_config.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c git2r_cred.c -o git2r_cred.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c git2r_diff.c -o git2r_diff.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c git2r_error.c -o git2r_error.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c git2r_graph.c -o git2r_graph.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c git2r_index.c -o git2r_index.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c git2r_libgit2.c -o git2r_libgit2.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c git2r_merge.c -o git2r_merge.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c git2r_note.c -o git2r_note.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c git2r_object.c -o git2r_object.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c git2r_odb.c -o git2r_odb.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c git2r_oid.c -o git2r_oid.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c git2r_push.c -o git2r_push.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c git2r_reference.c -o git2r_reference.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c git2r_reflog.c -o git2r_reflog.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c git2r_remote.c -o git2r_remote.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c git2r_repository.c -o git2r_repository.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c git2r_reset.c -o git2r_reset.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c git2r_revparse.c -o git2r_revparse.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c git2r_revwalk.c -o git2r_revwalk.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c git2r_signature.c -o git2r_signature.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c git2r_stash.c -o git2r_stash.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c git2r_status.c -o git2r_status.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c git2r_tag.c -o git2r_tag.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c git2r_transfer.c -o git2r_transfer.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c git2r_tree.c -o git2r_tree.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/annotated_commit.c -o libgit2/src/annotated_commit.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/attr.c -o libgit2/src/attr.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/attrcache.c -o libgit2/src/attrcache.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/attr_file.c -o libgit2/src/attr_file.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/blame.c -o libgit2/src/blame.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/blame_git.c -o libgit2/src/blame_git.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/blob.c -o libgit2/src/blob.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/branch.c -o libgit2/src/branch.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/buffer.c -o libgit2/src/buffer.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/buf_text.c -o libgit2/src/buf_text.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/cache.c -o libgit2/src/cache.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/checkout.c -o libgit2/src/checkout.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/cherrypick.c -o libgit2/src/cherrypick.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/clone.c -o libgit2/src/clone.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/commit.c -o libgit2/src/commit.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/commit_list.c -o libgit2/src/commit_list.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/config.c -o libgit2/src/config.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/config_cache.c -o libgit2/src/config_cache.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/config_file.c -o libgit2/src/config_file.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/crlf.c -o libgit2/src/crlf.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/curl_stream.c -o libgit2/src/curl_stream.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/date.c -o libgit2/src/date.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/delta-apply.c -o libgit2/src/delta-apply.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/delta.c -o libgit2/src/delta.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/describe.c -o libgit2/src/describe.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/diff.c -o libgit2/src/diff.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/diff_driver.c -o libgit2/src/diff_driver.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/diff_file.c -o libgit2/src/diff_file.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/diff_patch.c -o libgit2/src/diff_patch.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/diff_print.c -o libgit2/src/diff_print.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/diff_stats.c -o libgit2/src/diff_stats.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/diff_tform.c -o libgit2/src/diff_tform.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/diff_xdiff.c -o libgit2/src/diff_xdiff.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/errors.c -o libgit2/src/errors.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/fetch.c -o libgit2/src/fetch.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/fetchhead.c -o libgit2/src/fetchhead.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/filebuf.c -o libgit2/src/filebuf.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/fileops.c -o libgit2/src/fileops.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/filter.c -o libgit2/src/filter.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/fnmatch.c -o libgit2/src/fnmatch.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/global.c -o libgit2/src/global.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/graph.c -o libgit2/src/graph.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/hash.c -o libgit2/src/hash.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/hashsig.c -o libgit2/src/hashsig.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/ident.c -o libgit2/src/ident.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/ignore.c -o libgit2/src/ignore.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/index.c -o libgit2/src/index.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/indexer.c -o libgit2/src/indexer.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/iterator.c -o libgit2/src/iterator.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/merge.c -o libgit2/src/merge.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/merge_file.c -o libgit2/src/merge_file.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/message.c -o libgit2/src/message.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/mwindow.c -o libgit2/src/mwindow.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/netops.c -o libgit2/src/netops.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/notes.c -o libgit2/src/notes.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/object_api.c -o libgit2/src/object_api.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/object.c -o libgit2/src/object.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/odb.c -o libgit2/src/odb.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/odb_loose.c -o libgit2/src/odb_loose.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/odb_mempack.c -o libgit2/src/odb_mempack.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/odb_pack.c -o libgit2/src/odb_pack.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/oidarray.c -o libgit2/src/oidarray.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/oid.c -o libgit2/src/oid.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/openssl_stream.c -o libgit2/src/openssl_stream.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/pack.c -o libgit2/src/pack.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/pack-objects.c -o libgit2/src/pack-objects.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/path.c -o libgit2/src/path.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/pathspec.c -o libgit2/src/pathspec.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/pool.c -o libgit2/src/pool.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/posix.c -o libgit2/src/posix.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/pqueue.c -o libgit2/src/pqueue.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/push.c -o libgit2/src/push.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/rebase.c -o libgit2/src/rebase.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/refdb.c -o libgit2/src/refdb.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/refdb_fs.c -o libgit2/src/refdb_fs.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/reflog.c -o libgit2/src/reflog.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/refs.c -o libgit2/src/refs.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/refspec.c -o libgit2/src/refspec.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/remote.c -o libgit2/src/remote.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/repository.c -o libgit2/src/repository.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/reset.c -o libgit2/src/reset.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/revert.c -o libgit2/src/revert.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/revparse.c -o libgit2/src/revparse.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/revwalk.c -o libgit2/src/revwalk.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/settings.c -o libgit2/src/settings.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/sha1_lookup.c -o libgit2/src/sha1_lookup.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/signature.c -o libgit2/src/signature.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/socket_stream.c -o libgit2/src/socket_stream.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/sortedcache.c -o libgit2/src/sortedcache.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/stash.c -o libgit2/src/stash.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/status.c -o libgit2/src/status.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/strmap.c -o libgit2/src/strmap.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/submodule.c -o libgit2/src/submodule.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/sysdir.c -o libgit2/src/sysdir.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/tag.c -o libgit2/src/tag.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/thread-utils.c -o libgit2/src/thread-utils.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/tls_stream.c -o libgit2/src/tls_stream.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/trace.c -o libgit2/src/trace.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/transaction.c -o libgit2/src/transaction.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/transport.c -o libgit2/src/transport.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/tree.c -o libgit2/src/tree.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/tree-cache.c -o libgit2/src/tree-cache.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/tsort.c -o libgit2/src/tsort.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/util.c -o libgit2/src/util.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/vector.c -o libgit2/src/vector.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/zstream.c -o libgit2/src/zstream.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/transports/auth.c -o libgit2/src/transports/auth.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/transports/cred.c -o libgit2/src/transports/cred.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/transports/cred_helpers.c -o libgit2/src/transports/cred_helpers.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/transports/git.c -o libgit2/src/transports/git.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/transports/http.c -o libgit2/src/transports/http.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/transports/local.c -o libgit2/src/transports/local.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/transports/smart.c -o libgit2/src/transports/smart.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/transports/smart_pkt.c -o libgit2/src/transports/smart_pkt.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/transports/smart_protocol.c -o libgit2/src/transports/smart_protocol.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/transports/ssh.c -o libgit2/src/transports/ssh.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/unix/map.c -o libgit2/src/unix/map.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/unix/realpath.c -o libgit2/src/unix/realpath.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/xdiff/xdiffi.c -o libgit2/src/xdiff/xdiffi.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/xdiff/xemit.c -o libgit2/src/xdiff/xemit.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/xdiff/xhistogram.c -o libgit2/src/xdiff/xhistogram.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/xdiff/xmerge.c -o libgit2/src/xdiff/xmerge.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/xdiff/xpatience.c -o libgit2/src/xdiff/xpatience.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/xdiff/xprepare.c -o libgit2/src/xdiff/xprepare.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/src/xdiff/xutils.c -o libgit2/src/xdiff/xutils.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R -Wno-unused-function -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libgit2/deps/http-parser/http_parser.c -o libgit2/deps/http-parser/http_parser.o ==> default: ar rcs libmygit.a libgit2/src/annotated_commit.o libgit2/src/attr.o libgit2/src/attrcache.o libgit2/src/attr_file.o libgit2/src/blame.o libgit2/src/blame_git.o libgit2/src/blob.o libgit2/src/branch.o libgit2/src/buffer.o libgit2/src/buf_text.o libgit2/src/cache.o libgit2/src/checkout.o libgit2/src/cherrypick.o libgit2/src/clone.o libgit2/src/commit.o libgit2/src/commit_list.o libgit2/src/config.o libgit2/src/config_cache.o libgit2/src/config_file.o libgit2/src/crlf.o libgit2/src/curl_stream.o libgit2/src/date.o libgit2/src/delta-apply.o libgit2/src/delta.o libgit2/src/describe.o libgit2/src/diff.o libgit2/src/diff_driver.o libgit2/src/diff_file.o libgit2/src/diff_patch.o libgit2/src/diff_print.o libgit2/src/diff_stats.o libgit2/src/diff_tform.o libgit2/src/diff_xdiff.o libgit2/src/errors.o libgit2/src/fetch.o libgit2/src/fetchhead.o libgit2/src/filebuf.o libgit2/src/fileops.o libgit2/src/filter.o libgit2/src/fnmatch.o libgit2/src/global.o libgit2/src/graph.o libgit2/src/hash.o libgit2/src/hashsig.o libgit2/src/ident.o libgit2/src/ignore.o libgit2/src/index.o libgit2/src/indexer.o libgit2/src/iterator.o libgit2/src/merge.o libgit2/src/merge_file.o libgit2/src/message.o libgit2/src/mwindow.o libgit2/src/netops.o libgit2/src/notes.o libgit2/src/object_api.o libgit2/src/object.o libgit2/src/odb.o libgit2/src/odb_loose.o libgit2/src/odb_mempack.o libgit2/src/odb_pack.o libgit2/src/oidarray.o libgit2/src/oid.o libgit2/src/openssl_stream.o libgit2/src/pack.o libgit2/src/pack-objects.o libgit2/src/path.o libgit2/src/pathspec.o libgit2/src/pool.o libgit2/src/posix.o libgit2/src/pqueue.o libgit2/src/push.o libgit2/src/rebase.o libgit2/src/refdb.o libgit2/src/refdb_fs.o libgit2/src/reflog.o libgit2/src/refs.o libgit2/src/refspec.o libgit2/src/remote.o libgit2/src/repository.o libgit2/src/reset.o libgit2/src/revert.o libgit2/src/revparse.o libgit2/src/revwalk.o libgit2/src/settings.o libgit2/src/sha1_lookup.o libgit2/src/signature.o libgit2/src/socket_stream.o libgit2/src/sortedcache.o libgit2/src/stash.o libgit2/src/status.o libgit2/src/strmap.o libgit2/src/submodule.o libgit2/src/sysdir.o libgit2/src/tag.o libgit2/src/thread-utils.o libgit2/src/tls_stream.o libgit2/src/trace.o libgit2/src/transaction.o libgit2/src/transport.o libgit2/src/tree.o libgit2/src/tree-cache.o libgit2/src/tsort.o libgit2/src/util.o libgit2/src/vector.o libgit2/src/zstream.o libgit2/src/transports/auth.o libgit2/src/transports/cred.o libgit2/src/transports/cred_helpers.o libgit2/src/transports/git.o libgit2/src/transports/http.o libgit2/src/transports/local.o libgit2/src/transports/smart.o libgit2/src/transports/smart_pkt.o libgit2/src/transports/smart_protocol.o libgit2/src/transports/ssh.o libgit2/src/unix/map.o libgit2/src/unix/realpath.o libgit2/src/xdiff/xdiffi.o libgit2/src/xdiff/xemit.o libgit2/src/xdiff/xhistogram.o libgit2/src/xdiff/xmerge.o libgit2/src/xdiff/xpatience.o libgit2/src/xdiff/xprepare.o libgit2/src/xdiff/xutils.o libgit2/deps/http-parser/http_parser.o ==> default: gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o git2r.so git2r.o git2r_arg.o git2r_blame.o git2r_blob.o git2r_branch.o git2r_checkout.o git2r_clone.o git2r_commit.o git2r_config.o git2r_cred.o git2r_diff.o git2r_error.o git2r_graph.o git2r_index.o git2r_libgit2.o git2r_merge.o git2r_note.o git2r_object.o git2r_odb.o git2r_oid.o git2r_push.o git2r_reference.o git2r_reflog.o git2r_remote.o git2r_repository.o git2r_reset.o git2r_revparse.o git2r_revwalk.o git2r_signature.o git2r_stash.o git2r_status.o git2r_tag.o git2r_transfer.o git2r_tree.o -L. -lmygit -lcrypto -lssl -lz -L/usr/lib/x86_64-linux-gnu -lcurl -L/usr/lib/R/lib -lR ==> default: installing to /usr/local/lib/R/site-library/git2r/libs ==> default: ** R ==> default: ** inst ==> default: ** preparing package for lazy loading ==> default: Creating a generic function for ‘summary’ from package ‘base’ in package ‘git2r’ ==> default: Creating a generic function for ‘diff’ from package ‘base’ in package ‘git2r’ ==> default: Creating a generic function for ‘merge’ from package ‘base’ in package ‘git2r’ ==> default: Creating a generic function for ‘plot’ from package ‘graphics’ in package ‘git2r’ ==> default: Creating a generic function for ‘head’ from package ‘utils’ in package ‘git2r’ ==> default: ** help ==> default: *** installing help indices ==> default: ** building package indices ==> default: ** testing if installed package can be loaded ==> default: * DONE (git2r) ==> default: * installing *source* package ‘withr’ ... ==> default: ** package ‘withr’ successfully unpacked and MD5 sums checked ==> default: ** R ==> default: ** preparing package for lazy loading ==> default: ** help ==> default: *** installing help indices ==> default: ** building package indices ==> default: ** testing if installed package can be loaded ==> default: * DONE (withr) ==> default: * installing *source* package ‘curl’ ... ==> default: ** package ‘curl’ successfully unpacked and MD5 sums checked ==> default: Found pkg-config cflags and libs! ==> default: Using PKG_CFLAGS= ==> default: Using PKG_LIBS=-lcurl ==> default: ** libs ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c callbacks.c -o callbacks.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c curl.c -o curl.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c download.c -o download.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c escape.c -o escape.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c fetch.c -o fetch.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c form.c -o form.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c getdate.c -o getdate.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c handle.c -o handle.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ieproxy.c -o ieproxy.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c interrupt.c -o interrupt.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c nslookup.c -o nslookup.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c utils.c -o utils.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c version.c -o version.o ==> default: gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o curl.so callbacks.o curl.o download.o escape.o fetch.o form.o getdate.o handle.o ieproxy.o init.o interrupt.o nslookup.o utils.o version.o -lcurl -L/usr/lib/R/lib -lR ==> default: installing to /usr/local/lib/R/site-library/curl/libs ==> default: ** R ==> default: ** data ==> default: *** moving datasets to lazyload DB ==> default: ** inst ==> default: ** preparing package for lazy loading ==> default: ** help ==> default: *** installing help indices ==> default: ** building package indices ==> default: ** installing vignettes ==> default: ** testing if installed package can be loaded ==> default: * DONE (curl) ==> default: * installing *source* package ‘crayon’ ... ==> default: ** package ‘crayon’ successfully unpacked and MD5 sums checked ==> default: ** R ==> default: ** inst ==> default: ** preparing package for lazy loading ==> default: ** help ==> default: *** installing help indices ==> default: ** building package indices ==> default: ** testing if installed package can be loaded ==> default: * DONE (crayon) ==> default: * installing *source* package ‘Rcpp’ ... ==> default: ** package ‘Rcpp’ successfully unpacked and MD5 sums checked ==> default: ** libs ==> default: g++ -I/usr/share/R/include -DNDEBUG -I../inst/include/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Date.cpp -o Date.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -I../inst/include/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Module.cpp -o Module.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -I../inst/include/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Rcpp_init.cpp -o Rcpp_init.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -I../inst/include/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c api.cpp -o api.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -I../inst/include/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c attributes.cpp -o attributes.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -I../inst/include/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c barrier.cpp -o barrier.o ==> default: g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o Rcpp.so Date.o Module.o Rcpp_init.o api.o attributes.o barrier.o -L/usr/lib/R/lib -lR ==> default: installing to /usr/local/lib/R/site-library/Rcpp/libs ==> default: ** R ==> default: ** inst ==> default: ** preparing package for lazy loading ==> default: ** help ==> default: *** installing help indices ==> default: ** building package indices ==> default: ** installing vignettes ==> default: ** testing if installed package can be loaded ==> default: * DONE (Rcpp) ==> default: * installing *source* package ‘bitops’ ... ==> default: ** package ‘bitops’ successfully unpacked and MD5 sums checked ==> default: ** libs ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c bit-ops.c -o bit-ops.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cksum.c -o cksum.o ==> default: gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o bitops.so bit-ops.o cksum.o -L/usr/lib/R/lib -lR ==> default: installing to /usr/local/lib/R/site-library/bitops/libs ==> default: ** R ==> default: ** preparing package for lazy loading ==> default: ** help ==> default: *** installing help indices ==> default: ** building package indices ==> default: ** testing if installed package can be loaded ==> default: * DONE (bitops) ==> default: * installing *source* package ‘munsell’ ... ==> default: ** package ‘munsell’ successfully unpacked and MD5 sums checked ==> default: ** R ==> default: ** inst ==> default: ** preparing package for lazy loading ==> default: ** help ==> default: *** installing help indices ==> default: ** building package indices ==> default: ** testing if installed package can be loaded ==> default: * DONE (munsell) ==> default: * installing *source* package ‘plyr’ ... ==> default: ** package ‘plyr’ successfully unpacked and MD5 sums checked ==> default: ** libs ==> default: g++ -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c loop_apply.c -o loop_apply.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c split-numeric.cpp -o split-numeric.o ==> default: g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o plyr.so RcppExports.o loop_apply.o split-numeric.o -L/usr/lib/R/lib -lR ==> default: installing to /usr/local/lib/R/site-library/plyr/libs ==> default: ** R ==> default: ** data ==> default: *** moving datasets to lazyload DB ==> default: ** inst ==> default: ** preparing package for lazy loading ==> default: ** help ==> default: *** installing help indices ==> default: ** building package indices ==> default: ** testing if installed package can be loaded ==> default: * DONE (plyr) ==> default: * installing *source* package ‘foreach’ ... ==> default: ** package ‘foreach’ successfully unpacked and MD5 sums checked ==> default: ** R ==> default: ** demo ==> default: ** inst ==> default: ** preparing package for lazy loading ==> default: ** help ==> default: *** installing help indices ==> default: ** building package indices ==> default: ** installing vignettes ==> default: ** testing if installed package can be loaded ==> default: * DONE (foreach) ==> default: * installing *source* package ‘htmltools’ ... ==> default: ** package ‘htmltools’ successfully unpacked and MD5 sums checked ==> default: ** libs ==> default: g++ -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c template.cpp -o template.o ==> default: g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o htmltools.so RcppExports.o template.o -L/usr/lib/R/lib -lR ==> default: installing to /usr/local/lib/R/site-library/htmltools/libs ==> default: ** R ==> default: ** preparing package for lazy loading ==> default: ** help ==> default: *** installing help indices ==> default: ** building package indices ==> default: ** testing if installed package can be loaded ==> default: * DONE (htmltools) ==> default: * installing *source* package ‘caTools’ ... ==> default: ** package ‘caTools’ successfully unpacked and MD5 sums checked ==> default: ** libs ==> default: g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Gif2R.cpp -o Gif2R.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c GifTools.cpp -o GifTools.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c runfunc.c -o runfunc.o ==> default: g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o caTools.so Gif2R.o GifTools.o runfunc.o -L/usr/lib/R/lib -lR ==> default: installing to /usr/local/lib/R/site-library/caTools/libs ==> default: ** R ==> default: ** preparing package for lazy loading ==> default: ** help ==> default: *** installing help indices ==> default: ** building package indices ==> default: ** testing if installed package can be loaded ==> default: * DONE (caTools) ==> default: * installing *source* package ‘markdown’ ... ==> default: ** package ‘markdown’ successfully unpacked and MD5 sums checked ==> default: ** libs ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Rbase64.c -o Rbase64.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Rinit.c -o Rinit.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Rmarkdown.c -o Rmarkdown.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c autolink.c -o autolink.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c buffer.c -o buffer.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c houdini_href_e.c -o houdini_href_e.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c houdini_html_e.c -o houdini_html_e.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c html.c -o html.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c html_smartypants.c -o html_smartypants.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c markdown.c -o markdown.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stack.c -o stack.o ==> default: gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o markdown.so Rbase64.o Rinit.o Rmarkdown.o autolink.o buffer.o houdini_href_e.o houdini_html_e.o html.o html_smartypants.o markdown.o stack.o -L/usr/lib/R/lib -lR ==> default: installing to /usr/local/lib/R/site-library/markdown/libs ==> default: ** R ==> default: ** inst ==> default: ** preparing package for lazy loading ==> default: ** help ==> default: *** installing help indices ==> default: ** building package indices ==> default: ** installing vignettes ==> default: ** testing if installed package can be loaded ==> default: * DONE (markdown) ==> default: * installing *source* package ‘stringr’ ... ==> default: ** package ‘stringr’ successfully unpacked and MD5 sums checked ==> default: ** R ==> default: ** inst ==> default: ** preparing package for lazy loading ==> default: ** help ==> default: *** installing help indices ==> default: ** building package indices ==> default: ** installing vignettes ==> default: ** testing if installed package can be loaded ==> default: * DONE (stringr) ==> default: * installing *source* package ‘rex’ ... ==> default: ** package ‘rex’ successfully unpacked and MD5 sums checked ==> default: ** R ==> default: ** inst ==> default: ** preparing package for lazy loading ==> default: ** help ==> default: *** installing help indices ==> default: ** building package indices ==> default: ** installing vignettes ==> default: ** testing if installed package can be loaded ==> default: * DONE (rex) ==> default: * installing *source* package ‘xml2’ ... ==> default: ** package ‘xml2’ successfully unpacked and MD5 sums checked ==> default: Found pkg-config cflags and libs! ==> default: Using PKG_CFLAGS=-I/usr/include/libxml2 ==> default: Using PKG_LIBS=-lxml2 ==> default: ** libs ==> default: g++ -I/usr/share/R/include -DNDEBUG -I/usr/include/libxml2 -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/BH/include" -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -I/usr/include/libxml2 -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/BH/include" -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c connection.cpp -o connection.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -I/usr/include/libxml2 -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/BH/include" -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c xml2_doc.cpp -o xml2_doc.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -I/usr/include/libxml2 -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/BH/include" -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c xml2_init.cpp -o xml2_init.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -I/usr/include/libxml2 -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/BH/include" -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c xml2_namespace.cpp -o xml2_namespace.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -I/usr/include/libxml2 -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/BH/include" -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c xml2_node.cpp -o xml2_node.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -I/usr/include/libxml2 -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/BH/include" -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c xml2_url.cpp -o xml2_url.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -I/usr/include/libxml2 -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/BH/include" -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c xml2_xpath.cpp -o xml2_xpath.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -I/usr/include/libxml2 -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/BH/include" -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c xml_push.cpp -o xml_push.o ==> default: g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o xml2.so RcppExports.o connection.o xml2_doc.o xml2_init.o xml2_namespace.o xml2_node.o xml2_url.o xml2_xpath.o xml_push.o -lxml2 -L/usr/lib/R/lib -lR ==> default: installing to /usr/local/lib/R/site-library/xml2/libs ==> default: ** R ==> default: ** inst ==> default: ** preparing package for lazy loading ==> default: ** help ==> default: *** installing help indices ==> default: ** building package indices ==> default: ** installing vignettes ==> default: ** testing if installed package can be loaded ==> default: * DONE (xml2) ==> default: * installing *source* package ‘httr’ ... ==> default: ** package ‘httr’ successfully unpacked and MD5 sums checked ==> default: ** R ==> default: ** demo ==> default: ** inst ==> default: ** preparing package for lazy loading ==> default: ** help ==> default: *** installing help indices ==> default: ** building package indices ==> default: ** installing vignettes ==> default: ** testing if installed package can be loaded ==> default: * DONE (httr) ==> default: * installing *source* package ‘memoise’ ... ==> default: ** package ‘memoise’ successfully unpacked and MD5 sums checked ==> default: ** R ==> default: ** preparing package for lazy loading ==> default: ** help ==> default: *** installing help indices ==> default: ** building package indices ==> default: ** testing if installed package can be loaded ==> default: * DONE (memoise) ==> default: * installing *source* package ‘testthat’ ... ==> default: ** package ‘testthat’ successfully unpacked and MD5 sums checked ==> default: ** libs ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c label.c -o label.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c reassign.c -o reassign.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c test-catch.cpp -o test-catch.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c test-example.cpp -o test-example.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c test-runner.cpp -o test-runner.o ==> default: g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o testthat.so label.o reassign.o test-catch.o test-example.o test-runner.o -L/usr/lib/R/lib -lR ==> default: installing to /usr/local/lib/R/site-library/testthat/libs ==> default: ** R ==> default: ** inst ==> default: ** preparing package for lazy loading ==> default: ** help ==> default: *** installing help indices ==> default: ** building package indices ==> default: ** testing if installed package can be loaded ==> default: * DONE (testthat) ==> default: * installing *source* package ‘hunspell’ ... ==> default: ** package ‘hunspell’ successfully unpacked and MD5 sums checked ==> default: Package hunspell was not found in the pkg-config search path. ==> default: Perhaps you should add the directory containing `hunspell.pc' ==> default: to the PKG_CONFIG_PATH environment variable ==> default: No package 'hunspell' found ==> default: Using PKG_CFLAGS= ==> default: Using PKG_LIBS=-lhunspell-1.3 ==> default: ------------------------- ANTICONF ERROR --------------------------- ==> default: Configuration failed because hunspell was not found. Try installing: ==> default: * deb: libhunspell-dev (Debian, Ubuntu, etc) ==> default: * rpm: hunspell-devel (Fedora, CentOS, RHEL) ==> default: * brew: hunspell (Mac OSX) ==> default: If hunspell is already installed, check that 'pkg-config' is in your ==> default: PATH and PKG_CONFIG_PATH contains a hunspell.pc file. If pkg-config ==> default: is unavailable you can set INCLUDE_DIR and LIB_DIR manually via: ==> default: R CMD INSTALL --configure-vars='INCLUDE_DIR=... LIB_DIR=...' ==> default: -------------------------------------------------------------------- ==> default: ERROR: configuration failed for package ‘hunspell’ ==> default: * removing ‘/usr/local/lib/R/site-library/hunspell’ ==> default: * installing *source* package ‘scales’ ... ==> default: ** package ‘scales’ successfully unpacked and MD5 sums checked ==> default: ** libs ==> default: g++ -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c colors.cpp -o colors.o ==> default: g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o scales.so RcppExports.o colors.o -L/usr/lib/R/lib -lR ==> default: installing to /usr/local/lib/R/site-library/scales/libs ==> default: ** R ==> default: ** preparing package for lazy loading ==> default: ** help ==> default: *** installing help indices ==> default: ** building package indices ==> default: ** testing if installed package can be loaded ==> default: * DONE (scales) ==> default: * installing *source* package ‘pkgmaker’ ... ==> default: ** package ‘pkgmaker’ successfully unpacked and MD5 sums checked ==> default: ** R ==> default: ** inst ==> default: ** preparing package for lazy loading ==> default: Creating meta registry in package 'pkgmaker' ... ==> default: OK ==> default: Creating registry 'extra_handler' in package 'pkgmaker' ... ==> default: OK ==> default: Creating registry 'extra_action' in package 'pkgmaker' ... ==> default: OK ==> default: Registering extra handler 'install.packages' [function] ... ==> default: OK ==> default: ** help ==> default: *** installing help indices ==> default: ** building package indices ==> default: ** installing vignettes ==> default: ** testing if installed package can be loaded ==> default: * DONE (pkgmaker) ==> default: * installing *source* package ‘doParallel’ ... ==> default: ** package ‘doParallel’ successfully unpacked and MD5 sums checked ==> default: ** R ==> default: ** demo ==> default: ** inst ==> default: ** preparing package for lazy loading ==> default: ** help ==> default: *** installing help indices ==> default: ** building package indices ==> default: ** installing vignettes ==> default: ** testing if installed package can be loaded ==> default: * DONE (doParallel) ==> default: * installing *source* package ‘reshape2’ ... ==> default: ** package ‘reshape2’ successfully unpacked and MD5 sums checked ==> default: ** libs ==> default: g++ -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c melt.cpp -o melt.o ==> default: g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o reshape2.so RcppExports.o melt.o -L/usr/lib/R/lib -lR ==> default: installing to /usr/local/lib/R/site-library/reshape2/libs ==> default: ** R ==> default: ** data ==> default: *** moving datasets to lazyload DB ==> default: ** inst ==> default: ** preparing package for lazy loading ==> default: ** help ==> default: *** installing help indices ==> default: ** building package indices ==> default: ** testing if installed package can be loaded ==> default: * DONE (reshape2) ==> default: * installing *source* package ‘roxygen2’ ... ==> default: ** package ‘roxygen2’ successfully unpacked and MD5 sums checked ==> default: ** libs ==> default: g++ -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c isComplete.cpp -o isComplete.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c leadingSpaces.cpp -o leadingSpaces.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c parser2.cpp -o parser2.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c wrapString.cpp -o wrapString.o ==> default: g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o roxygen2.so RcppExports.o isComplete.o leadingSpaces.o parser2.o wrapString.o -L/usr/lib/R/lib -lR ==> default: installing to /usr/local/lib/R/site-library/roxygen2/libs ==> default: ** R ==> default: ** inst ==> default: ** preparing package for lazy loading ==> default: ** help ==> default: *** installing help indices ==> default: ** building package indices ==> default: ** installing vignettes ==> default: ** testing if installed package can be loaded ==> default: * DONE (roxygen2) ==> default: * installing *source* package ‘evaluate’ ... ==> default: ** package ‘evaluate’ successfully unpacked and MD5 sums checked ==> default: ** R ==> default: ** preparing package for lazy loading ==> default: ** help ==> default: *** installing help indices ==> default: ** building package indices ==> default: ** testing if installed package can be loaded ==> default: * DONE (evaluate) ==> default: * installing *source* package ‘rversions’ ... ==> default: ** package ‘rversions’ successfully unpacked and MD5 sums checked ==> default: ** R ==> default: ** inst ==> default: ** preparing package for lazy loading ==> default: ** help ==> default: *** installing help indices ==> default: ** building package indices ==> default: ** testing if installed package can be loaded ==> default: * DONE (rversions) ==> default: * installing *source* package ‘covr’ ... ==> default: ** package ‘covr’ successfully unpacked and MD5 sums checked ==> default: ** libs ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c reassign.c -o reassign.o ==> default: gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o covr.so reassign.o -L/usr/lib/R/lib -lR ==> default: installing to /usr/local/lib/R/site-library/covr/libs ==> default: ** R ==> default: ** inst ==> default: ** preparing package for lazy loading ==> default: ** help ==> default: *** installing help indices ==> default: ** building package indices ==> default: ** installing vignettes ==> default: ** testing if installed package can be loaded ==> default: * DONE (covr) ==> default: * installing *source* package ‘gmailr’ ... ==> default: ** package ‘gmailr’ successfully unpacked and MD5 sums checked ==> default: ** R ==> default: ** inst ==> default: ** preparing package for lazy loading ==> default: ** help ==> default: *** installing help indices ==> default: ** building package indices ==> default: ** installing vignettes ==> default: ** testing if installed package can be loaded ==> default: * DONE (gmailr) ==> default: * installing *source* package ‘devtools’ ... ==> default: ** package ‘devtools’ successfully unpacked and MD5 sums checked ==> default: ** libs ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c devtools.c -o devtools.o ==> default: gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o devtools.so devtools.o -L/usr/lib/R/lib -lR ==> default: installing to /usr/local/lib/R/site-library/devtools/libs ==> default: ** R ==> default: ** inst ==> default: ** preparing package for lazy loading ==> default: ** help ==> default: *** installing help indices ==> default: ** building package indices ==> default: ** installing vignettes ==> default: ** testing if installed package can be loaded ==> default: * DONE (devtools) ==> default: * installing *source* package ‘rngtools’ ... ==> default: ** package ‘rngtools’ successfully unpacked and MD5 sums checked ==> default: ** R ==> default: ** inst ==> default: ** preparing package for lazy loading ==> default: ** help ==> default: *** installing help indices ==> default: ** building package indices ==> default: ** installing vignettes ==> default: ** testing if installed package can be loaded ==> default: * DONE (rngtools) ==> default: * installing *source* package ‘ggplot2’ ... ==> default: ** package ‘ggplot2’ successfully unpacked and MD5 sums checked ==> default: ** R ==> default: ** data ==> default: *** moving datasets to lazyload DB ==> default: ** inst ==> default: ** preparing package for lazy loading ==> default: ** help ==> default: *** installing help indices ==> default: ** building package indices ==> default: ** installing vignettes ==> default: ** testing if installed package can be loaded ==> default: * DONE (ggplot2) ==> default: * installing *source* package ‘knitr’ ... ==> default: ** package ‘knitr’ successfully unpacked and MD5 sums checked ==> default: ** R ==> default: ** demo ==> default: ** inst ==> default: ** preparing package for lazy loading ==> default: ** help ==> default: *** installing help indices ==> default: ** building package indices ==> default: ** installing vignettes ==> default: ** testing if installed package can be loaded ==> default: * DONE (knitr) ==> default: * installing *source* package ‘NMF’ ... ==> default: ** package ‘NMF’ successfully unpacked and MD5 sums checked ==> default: ** libs ==> default: g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c distance.cpp -o distance.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c divergence.cpp -o divergence.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c euclidean.cpp -o euclidean.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c utils.cpp -o utils.o ==> default: g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o NMF.so distance.o divergence.o euclidean.o utils.o -L/usr/lib/R/lib -lR ==> default: installing to /usr/local/lib/R/site-library/NMF/libs ==> default: ** R ==> default: ** data ==> default: ** demo ==> default: ** inst ==> default: ** preparing package for lazy loading ==> default: Setting package specific options: package:NMF (10 default option(s)) ==> default: Registering extra action 'Biobase' for handler 'install.packages' ... ==> default: OK ==> default: Creating meta registry in package 'NMF' ... ==> default: OK ==> default: Creating registry 'pkgmaker::extra_action' in package 'NMF' ... ==> default: OK ==> default: Adding entry 'Biobase' in registry 'pkgmaker::extra_action' ... ==> default: OK ==> default: Creating registry 'algorithm' in package 'NMF' ... ==> default: OK ==> default: Registering NMF algorithm '.R#brunet' [NMFStrategyIterative] ... ==> default: OK ==> default: Registering NMF algorithm 'brunet' [NMFStrategyIterative] based on template '.R#brunet' ... ==> default: OK ==> default: Registering NMF algorithm 'KL' [NMFStrategyIterative] ... ==> default: OK ==> default: Registering NMF algorithm '.R#lee' [NMFStrategyIterative] ... ==> default: OK ==> default: Registering NMF algorithm 'lee' [NMFStrategyIterative] based on template '.R#lee' ... ==> default: OK ==> default: Registering NMF algorithm 'Frobenius' [NMFStrategyIterative] ... ==> default: OK ==> default: Registering NMF algorithm '.R#offset' [NMFStrategyIterative] ... ==> default: OK ==> default: Registering NMF algorithm 'offset' [NMFStrategyIterative] based on template '.R#offset' ... ==> default: OK ==> default: Registering NMF algorithm '.R#nsNMF' [NMFStrategyIterative] ... ==> default: OK ==> default: Registering NMF algorithm 'nsNMF' [NMFStrategyIterative] based on template '.R#nsNMF' ... ==> default: OK ==> default: Registering NMF algorithm '.M#brunet' [NMFStrategyOctave] ... ==> default: OK ==> default: Registering NMF algorithm 'ls-nmf' [NMFStrategyIterative] ... ==> default: OK ==> default: Registering NMF algorithm 'pe-nmf' [NMFStrategyIterative] ... ==> default: OK ==> default: Registering NMF algorithm '.siNMF' [NMFStrategyIterative] based on template 'lee' ... ==> default: OK ==> default: Registering NMF algorithm 'siNMF' [NMFStrategyIterative] based on template 'lee' ... ==> default: OK ==> default: Registering NMF algorithm 'snmf/r' [NMFStrategyFunction] ... ==> default: OK ==> default: Registering NMF algorithm 'snmf/l' [NMFStrategyFunction] ... ==> default: OK ==> default: Creating registry 'seed' in package 'NMF' ... ==> default: OK ==> default: Registering extra action 'bigmemory' for handler 'install.packages' ... ==> default: OK ==> default: Adding entry 'bigmemory' in registry 'pkgmaker::extra_action' ... ==> default: OK ==> default: Registering extra action 'synchronicity' for handler 'install.packages' ... ==> default: OK ==> default: Adding entry 'synchronicity' in registry 'pkgmaker::extra_action' ... ==> default: OK ==> default: Registering NMF seeding method 'none' [NMFSeed] ... ==> default: OK ==> default: Registering NMF seeding method 'random' [NMFSeed] ... ==> default: OK ==> default: Registering NMF seeding method 'ica' [NMFSeed] ... ==> default: OK ==> default: Registering NMF seeding method 'nndsvd' [NMFSeed] ... ==> default: OK ==> default: ** help ==> default: *** installing help indices ==> default: ** building package indices ==> default: ** installing vignettes ==> default: ** testing if installed package can be loaded ==> default: * DONE (NMF) ==> default: * installing *source* package ‘rmarkdown’ ... ==> default: ** package ‘rmarkdown’ successfully unpacked and MD5 sums checked ==> default: ** R ==> default: ** inst ==> default: ** preparing package for lazy loading ==> default: ** help ==> default: *** installing help indices ==> default: ** building package indices ==> default: ** testing if installed package can be loaded ==> default: * DONE (rmarkdown) ==> default: * installing *source* package ‘igraph’ ... ==> default: ** package ‘igraph’ successfully unpacked and MD5 sums checked ==> default: checking for gcc... ==> default: gcc -std=gnu99 ==> default: checking whether the C compiler works... ==> default: yes ==> default: checking for C compiler default output file name... ==> default: a.out ==> default: checking for suffix of executables... ==> default: checking whether we are cross compiling... ==> default: no ==> default: checking for suffix of object files... ==> default: o ==> default: checking whether we are using the GNU C compiler... ==> default: yes ==> default: checking whether gcc -std=gnu99 accepts -g... ==> default: yes ==> default: checking for gcc -std=gnu99 option to accept ISO C89... ==> default: none needed ==> default: checking whether we are using the GNU Fortran compiler... ==> default: yes ==> default: checking whether gfortran accepts -g... ==> default: yes ==> default: checking whether we are using the GNU C++ compiler... ==> default: yes ==> default: checking whether g++ accepts -g... ==> default: yes ==> default: checking how to run the C++ preprocessor... ==> default: g++ -E ==> default: checking for rintf... ==> default: yes ==> default: checking for finite... ==> default: yes ==> default: checking for expm1... ==> default: yes ==> default: checking for rint... ==> default: yes ==> default: checking for log2... ==> default: yes ==> default: checking for logbl... ==> default: yes ==> default: checking for snprintf... ==> default: yes ==> default: checking for log1p... ==> default: yes ==> default: checking for round... ==> default: yes ==> default: checking for fmin... ==> default: yes ==> default: checking for stpcpy... ==> default: yes ==> default: checking how to run the C preprocessor... ==> default: gcc -std=gnu99 -E ==> default: checking for grep that handles long lines and -e... ==> default: /bin/grep ==> default: checking for egrep... ==> default: /bin/grep -E ==> default: checking for ANSI C header files... ==> default: yes ==> default: checking for sys/types.h... ==> default: yes ==> default: checking for sys/stat.h... ==> default: yes ==> default: checking for stdlib.h... ==> default: yes ==> default: checking for string.h... ==> default: yes ==> default: checking for memory.h... ==> default: yes ==> default: checking for strings.h... ==> default: yes ==> default: checking for inttypes.h... ==> default: yes ==> default: checking for stdint.h... ==> default: yes ==> default: checking for unistd.h... ==> default: yes ==> default: checking whether stpcpy is declared... ==> default: yes ==> default: checking sys/times.h usability... ==> default: yes ==> default: checking sys/times.h presence... ==> default: yes ==> default: checking for sys/times.h... ==> default: yes ==> default: checking net/if.h usability... ==> default: yes ==> default: checking net/if.h presence... ==> default: yes ==> default: checking for net/if.h... ==> default: yes ==> default: checking netinet/in.h usability... ==> default: yes ==> default: checking netinet/in.h presence... ==> default: yes ==> default: checking for netinet/in.h... ==> default: yes ==> default: checking net/if_dl.h usability... ==> default: no ==> default: checking net/if_dl.h presence... ==> default: no ==> default: checking for net/if_dl.h... ==> default: no ==> default: checking sys/sockio.h usability... ==> default: no ==> default: checking sys/sockio.h presence... ==> default: no ==> default: checking for sys/sockio.h... ==> default: no ==> default: checking sys/un.h usability... ==> default: yes ==> default: checking sys/un.h presence... ==> default: yes ==> default: checking for sys/un.h... ==> default: yes ==> default: checking sys/socket.h usability... ==> default: yes ==> default: checking sys/socket.h presence... ==> default: yes ==> default: checking for sys/socket.h... ==> default: yes ==> default: checking sys/ioctl.h usability... ==> default: yes ==> default: checking sys/ioctl.h presence... ==> default: yes ==> default: checking for sys/ioctl.h... ==> default: yes ==> default: checking sys/time.h usability... ==> default: yes ==> default: checking sys/time.h presence... ==> default: yes ==> default: checking for sys/time.h... ==> default: yes ==> default: checking sys/file.h usability... ==> default: yes ==> default: checking sys/file.h presence... ==> default: yes ==> default: checking for sys/file.h... ==> default: yes ==> default: checking for struct sockaddr.sa_len... ==> default: no ==> default: checking for xml2-config... ==> default: /usr/bin/xml2-config ==> default: checking for xmlSAXUserParseFile in -lxml2... ==> default: yes ==> default: checking libxml/parser.h usability... ==> default: yes ==> default: checking libxml/parser.h presence... ==> default: yes ==> default: checking for libxml/parser.h... ==> default: yes ==> default: checking for __gmpz_add in -lgmp... ==> default: no ==> default: configure: creating ./config.status ==> default: config.status: creating src/Makevars.tmp ==> default: config.status: creating src/Makevars ==> default: config.status: creating src/config.h ==> default: ** libs ==> default: gfortran -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -c AMD/Source/amd.f -o AMD/Source/amd.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c AMD/Source/amd_1.c -o AMD/Source/amd_1.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c AMD/Source/amd_2.c -o AMD/Source/amd_2.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c AMD/Source/amd_aat.c -o AMD/Source/amd_aat.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c AMD/Source/amd_control.c -o AMD/Source/amd_control.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c AMD/Source/amd_defaults.c -o AMD/Source/amd_defaults.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c AMD/Source/amd_dump.c -o AMD/Source/amd_dump.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c AMD/Source/amd_global.c -o AMD/Source/amd_global.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c AMD/Source/amd_info.c -o AMD/Source/amd_info.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c AMD/Source/amd_order.c -o AMD/Source/amd_order.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c AMD/Source/amd_post_tree.c -o AMD/Source/amd_post_tree.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c AMD/Source/amd_postorder.c -o AMD/Source/amd_postorder.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c AMD/Source/amd_preprocess.c -o AMD/Source/amd_preprocess.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c AMD/Source/amd_valid.c -o AMD/Source/amd_valid.o ==> default: gfortran -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -c AMD/Source/amdbar.f -o AMD/Source/amdbar.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c CHOLMOD/Check/cholmod_check.c -o CHOLMOD/Check/cholmod_check.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c CHOLMOD/Check/cholmod_read.c -o CHOLMOD/Check/cholmod_read.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c CHOLMOD/Check/cholmod_write.c -o CHOLMOD/Check/cholmod_write.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c CHOLMOD/Cholesky/cholmod_amd.c -o CHOLMOD/Cholesky/cholmod_amd.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c CHOLMOD/Cholesky/cholmod_analyze.c -o CHOLMOD/Cholesky/cholmod_analyze.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c CHOLMOD/Cholesky/cholmod_colamd.c -o CHOLMOD/Cholesky/cholmod_colamd.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c CHOLMOD/Cholesky/cholmod_etree.c -o CHOLMOD/Cholesky/cholmod_etree.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c CHOLMOD/Cholesky/cholmod_factorize.c -o CHOLMOD/Cholesky/cholmod_factorize.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c CHOLMOD/Cholesky/cholmod_postorder.c -o CHOLMOD/Cholesky/cholmod_postorder.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c CHOLMOD/Cholesky/cholmod_rcond.c -o CHOLMOD/Cholesky/cholmod_rcond.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c CHOLMOD/Cholesky/cholmod_resymbol.c -o CHOLMOD/Cholesky/cholmod_resymbol.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c CHOLMOD/Cholesky/cholmod_rowcolcounts.c -o CHOLMOD/Cholesky/cholmod_rowcolcounts.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c CHOLMOD/Cholesky/cholmod_rowfac.c -o CHOLMOD/Cholesky/cholmod_rowfac.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c CHOLMOD/Cholesky/cholmod_solve.c -o CHOLMOD/Cholesky/cholmod_solve.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c CHOLMOD/Cholesky/cholmod_spsolve.c -o CHOLMOD/Cholesky/cholmod_spsolve.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c CHOLMOD/Core/cholmod_aat.c -o CHOLMOD/Core/cholmod_aat.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c CHOLMOD/Core/cholmod_add.c -o CHOLMOD/Core/cholmod_add.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c CHOLMOD/Core/cholmod_band.c -o CHOLMOD/Core/cholmod_band.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c CHOLMOD/Core/cholmod_change_factor.c -o CHOLMOD/Core/cholmod_change_factor.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c CHOLMOD/Core/cholmod_common.c -o CHOLMOD/Core/cholmod_common.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c CHOLMOD/Core/cholmod_complex.c -o CHOLMOD/Core/cholmod_complex.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c CHOLMOD/Core/cholmod_copy.c -o CHOLMOD/Core/cholmod_copy.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c CHOLMOD/Core/cholmod_dense.c -o CHOLMOD/Core/cholmod_dense.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c CHOLMOD/Core/cholmod_error.c -o CHOLMOD/Core/cholmod_error.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c CHOLMOD/Core/cholmod_factor.c -o CHOLMOD/Core/cholmod_factor.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c CHOLMOD/Core/cholmod_memory.c -o CHOLMOD/Core/cholmod_memory.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c CHOLMOD/Core/cholmod_sparse.c -o CHOLMOD/Core/cholmod_sparse.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c CHOLMOD/Core/cholmod_transpose.c -o CHOLMOD/Core/cholmod_transpose.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c CHOLMOD/Core/cholmod_triplet.c -o CHOLMOD/Core/cholmod_triplet.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c CHOLMOD/Core/cholmod_version.c -o CHOLMOD/Core/cholmod_version.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c CHOLMOD/MatrixOps/cholmod_drop.c -o CHOLMOD/MatrixOps/cholmod_drop.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c CHOLMOD/MatrixOps/cholmod_horzcat.c -o CHOLMOD/MatrixOps/cholmod_horzcat.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c CHOLMOD/MatrixOps/cholmod_norm.c -o CHOLMOD/MatrixOps/cholmod_norm.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c CHOLMOD/MatrixOps/cholmod_scale.c -o CHOLMOD/MatrixOps/cholmod_scale.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c CHOLMOD/MatrixOps/cholmod_sdmult.c -o CHOLMOD/MatrixOps/cholmod_sdmult.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c CHOLMOD/MatrixOps/cholmod_ssmult.c -o CHOLMOD/MatrixOps/cholmod_ssmult.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c CHOLMOD/MatrixOps/cholmod_submatrix.c -o CHOLMOD/MatrixOps/cholmod_submatrix.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c CHOLMOD/MatrixOps/cholmod_symmetry.c -o CHOLMOD/MatrixOps/cholmod_symmetry.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c CHOLMOD/MatrixOps/cholmod_vertcat.c -o CHOLMOD/MatrixOps/cholmod_vertcat.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c CHOLMOD/Modify/cholmod_rowadd.c -o CHOLMOD/Modify/cholmod_rowadd.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c CHOLMOD/Modify/cholmod_rowdel.c -o CHOLMOD/Modify/cholmod_rowdel.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c CHOLMOD/Modify/cholmod_updown.c -o CHOLMOD/Modify/cholmod_updown.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c CHOLMOD/Partition/cholmod_camd.c -o CHOLMOD/Partition/cholmod_camd.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c CHOLMOD/Partition/cholmod_ccolamd.c -o CHOLMOD/Partition/cholmod_ccolamd.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c CHOLMOD/Partition/cholmod_csymamd.c -o CHOLMOD/Partition/cholmod_csymamd.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c CHOLMOD/Partition/cholmod_metis.c -o CHOLMOD/Partition/cholmod_metis.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c CHOLMOD/Partition/cholmod_nesdis.c -o CHOLMOD/Partition/cholmod_nesdis.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c CHOLMOD/Supernodal/cholmod_super_numeric.c -o CHOLMOD/Supernodal/cholmod_super_numeric.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c CHOLMOD/Supernodal/cholmod_super_solve.c -o CHOLMOD/Supernodal/cholmod_super_solve.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c CHOLMOD/Supernodal/cholmod_super_symbolic.c -o CHOLMOD/Supernodal/cholmod_super_symbolic.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c COLAMD/Source/colamd.c -o COLAMD/Source/colamd.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c COLAMD/Source/colamd_global.c -o COLAMD/Source/colamd_global.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c DensityGrid.cpp -o DensityGrid.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c DensityGrid_3d.cpp -o DensityGrid_3d.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c NetDataTypes.cpp -o NetDataTypes.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c NetRoutines.cpp -o NetRoutines.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c SuiteSparse_config/SuiteSparse_config.c -o SuiteSparse_config/SuiteSparse_config.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c adjlist.c -o adjlist.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c arpack.c -o arpack.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c array.c -o array.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c atlas.c -o atlas.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c attributes.c -o attributes.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c basic_query.c -o basic_query.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c bfgs.c -o bfgs.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c bigint.c -o bigint.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c bignum.c -o bignum.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c bipartite.c -o bipartite.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c blas.c -o blas.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c bliss.cc -o bliss.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c bliss_eqrefhash.cc -o bliss_eqrefhash.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c bliss_graph.cc -o bliss_graph.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c bliss_heap.cc -o bliss_heap.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c bliss_orbit.cc -o bliss_orbit.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c bliss_partition.cc -o bliss_partition.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c bliss_timer.cc -o bliss_timer.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c bliss_utils.cc -o bliss_utils.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cattributes.c -o cattributes.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c centrality.c -o centrality.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cliques.c -o cliques.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c clustertool.cpp -o clustertool.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cocitation.c -o cocitation.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cohesive_blocks.c -o cohesive_blocks.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c community.c -o community.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c complex.c -o complex.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c components.c -o components.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c conversion.c -o conversion.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cores.c -o cores.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cs/cs_add.c -o cs/cs_add.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cs/cs_amd.c -o cs/cs_amd.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cs/cs_chol.c -o cs/cs_chol.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cs/cs_cholsol.c -o cs/cs_cholsol.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cs/cs_compress.c -o cs/cs_compress.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cs/cs_counts.c -o cs/cs_counts.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cs/cs_cumsum.c -o cs/cs_cumsum.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cs/cs_dfs.c -o cs/cs_dfs.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cs/cs_dmperm.c -o cs/cs_dmperm.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cs/cs_droptol.c -o cs/cs_droptol.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cs/cs_dropzeros.c -o cs/cs_dropzeros.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cs/cs_dupl.c -o cs/cs_dupl.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cs/cs_entry.c -o cs/cs_entry.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cs/cs_ereach.c -o cs/cs_ereach.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cs/cs_etree.c -o cs/cs_etree.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cs/cs_fkeep.c -o cs/cs_fkeep.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cs/cs_gaxpy.c -o cs/cs_gaxpy.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cs/cs_happly.c -o cs/cs_happly.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cs/cs_house.c -o cs/cs_house.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cs/cs_ipvec.c -o cs/cs_ipvec.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cs/cs_leaf.c -o cs/cs_leaf.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cs/cs_load.c -o cs/cs_load.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cs/cs_lsolve.c -o cs/cs_lsolve.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cs/cs_ltsolve.c -o cs/cs_ltsolve.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cs/cs_lu.c -o cs/cs_lu.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cs/cs_lusol.c -o cs/cs_lusol.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cs/cs_malloc.c -o cs/cs_malloc.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cs/cs_maxtrans.c -o cs/cs_maxtrans.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cs/cs_multiply.c -o cs/cs_multiply.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cs/cs_norm.c -o cs/cs_norm.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cs/cs_permute.c -o cs/cs_permute.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cs/cs_pinv.c -o cs/cs_pinv.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cs/cs_post.c -o cs/cs_post.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cs/cs_print.c -o cs/cs_print.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cs/cs_pvec.c -o cs/cs_pvec.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cs/cs_qr.c -o cs/cs_qr.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cs/cs_qrsol.c -o cs/cs_qrsol.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cs/cs_randperm.c -o cs/cs_randperm.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cs/cs_reach.c -o cs/cs_reach.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cs/cs_scatter.c -o cs/cs_scatter.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cs/cs_scc.c -o cs/cs_scc.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cs/cs_schol.c -o cs/cs_schol.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cs/cs_spsolve.c -o cs/cs_spsolve.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cs/cs_sqr.c -o cs/cs_sqr.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cs/cs_symperm.c -o cs/cs_symperm.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cs/cs_tdfs.c -o cs/cs_tdfs.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cs/cs_transpose.c -o cs/cs_transpose.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cs/cs_updown.c -o cs/cs_updown.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cs/cs_usolve.c -o cs/cs_usolve.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cs/cs_util.c -o cs/cs_util.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cs/cs_utsolve.c -o cs/cs_utsolve.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c decomposition.c -o decomposition.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c distances.c -o distances.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dotproduct.c -o dotproduct.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dqueue.c -o dqueue.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c drl_graph.cpp -o drl_graph.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c drl_graph_3d.cpp -o drl_graph_3d.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c drl_layout.cpp -o drl_layout.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c drl_layout_3d.cpp -o drl_layout_3d.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c drl_parse.cpp -o drl_parse.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c eigen.c -o eigen.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c embedding.c -o embedding.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c fast_community.c -o fast_community.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c feedback_arc_set.c -o feedback_arc_set.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c flow.c -o flow.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c foreign-dl-lexer.c -o foreign-dl-lexer.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c foreign-dl-parser.c -o foreign-dl-parser.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c foreign-gml-lexer.c -o foreign-gml-lexer.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c foreign-gml-parser.c -o foreign-gml-parser.o ==> default: In file included from src/foreign-gml-parser.y:59:0: ==> default: igraph_hacks_internal.h:42:0: warning: "strdup" redefined ==> default: # define strdup igraph_i_strdup ==> default: ^ ==> default: In file included from /usr/include/string.h:630:0, ==> default: from src/foreign-gml-parser.y:54: ==> default: /usr/include/x86_64-linux-gnu/bits/string2.h:1291:0: note: this is the location of the previous definition ==> default: # define strdup(s) __strdup (s) ==> default: ^ ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c foreign-graphml.c -o foreign-graphml.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c foreign-lgl-lexer.c -o foreign-lgl-lexer.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c foreign-lgl-parser.c -o foreign-lgl-parser.o ==> default: In file included from src/foreign-lgl-parser.y:54:0: ==> default: igraph_hacks_internal.h:42:0: warning: "strdup" redefined ==> default: # define strdup igraph_i_strdup ==> default: ^ ==> default: In file included from /usr/include/string.h:630:0, ==> default: from src/foreign-lgl-parser.y:53: ==> default: /usr/include/x86_64-linux-gnu/bits/string2.h:1291:0: note: this is the location of the previous definition ==> default: # define strdup(s) __strdup (s) ==> default: ^ ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c foreign-ncol-lexer.c -o foreign-ncol-lexer.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c foreign-ncol-parser.c -o foreign-ncol-parser.o ==> default: In file included from src/foreign-ncol-parser.y:54:0: ==> default: igraph_hacks_internal.h:42:0: warning: "strdup" redefined ==> default: # define strdup igraph_i_strdup ==> default: ^ ==> default: In file included from /usr/include/string.h:630:0, ==> default: from src/foreign-ncol-parser.y:53: ==> default: /usr/include/x86_64-linux-gnu/bits/string2.h:1291:0: note: this is the location of the previous definition ==> default: # define strdup(s) __strdup (s) ==> default: ^ ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c foreign-pajek-lexer.c -o foreign-pajek-lexer.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c foreign-pajek-parser.c -o foreign-pajek-parser.o ==> default: In file included from src/foreign-pajek-parser.y:54:0: ==> default: igraph_hacks_internal.h:42:0: warning: "strdup" redefined ==> default: # define strdup igraph_i_strdup ==> default: ^ ==> default: In file included from /usr/include/string.h:630:0, ==> default: from src/foreign-pajek-parser.y:53: ==> default: /usr/include/x86_64-linux-gnu/bits/string2.h:1291:0: note: this is the location of the previous definition ==> default: # define strdup(s) __strdup (s) ==> default: ^ ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c foreign.c -o foreign.o ==> default: foreign.c: In function ‘igraph_i_gml_tostring’: ==> default: foreign.c:1050:10: warning: function may return address of local variable [-Wreturn-local-addr] ==> default: return p; ==> default: ^ ==> default: foreign.c:1029:8: note: declared here ==> default: char tmp[256]; ==> default: ^ ==> default: foreign.c:1050:10: warning: function may return address of local variable [-Wreturn-local-addr] ==> default: return p; ==> default: ^ ==> default: foreign.c:1029:8: note: declared here ==> default: char tmp[256]; ==> default: ^ ==> default: foreign.c:1050:10: warning: function may return address of local variable [-Wreturn-local-addr] ==> default: return p; ==> default: ^ ==> default: foreign.c:1029:8: note: declared here ==> default: char tmp[256]; ==> default: ^ ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c forestfire.c -o forestfire.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c fortran_intrinsics.c -o fortran_intrinsics.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c games.c -o games.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c gengraph_box_list.cpp -o gengraph_box_list.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c gengraph_degree_sequence.cpp -o gengraph_degree_sequence.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c gengraph_graph_molloy_hash.cpp -o gengraph_graph_molloy_hash.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c gengraph_graph_molloy_optimized.cpp -o gengraph_graph_molloy_optimized.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c gengraph_mr-connected.cpp -o gengraph_mr-connected.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c gengraph_powerlaw.cpp -o gengraph_powerlaw.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c gengraph_random.cpp -o gengraph_random.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glet.c -o glet.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk_support.c -o glpk_support.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c gml_tree.c -o gml_tree.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c hacks.c -o hacks.o ==> default: In file included from hacks.c:27:0: ==> default: igraph_hacks_internal.h:42:0: warning: "strdup" redefined ==> default: # define strdup igraph_i_strdup ==> default: ^ ==> default: In file included from /usr/include/string.h:630:0, ==> default: from /usr/include/memory.h:29, ==> default: from hacks.c:24: ==> default: /usr/include/x86_64-linux-gnu/bits/string2.h:1291:0: note: this is the location of the previous definition ==> default: # define strdup(s) __strdup (s) ==> default: ^ ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c heap.c -o heap.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c igraph_buckets.c -o igraph_buckets.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c igraph_error.c -o igraph_error.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c igraph_estack.c -o igraph_estack.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c igraph_fixed_vectorlist.c -o igraph_fixed_vectorlist.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c igraph_grid.c -o igraph_grid.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c igraph_hashtable.c -o igraph_hashtable.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c igraph_heap.c -o igraph_heap.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c igraph_hrg.cc -o igraph_hrg.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c igraph_hrg_types.cc -o igraph_hrg_types.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c igraph_marked_queue.c -o igraph_marked_queue.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c igraph_psumtree.c -o igraph_psumtree.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c igraph_set.c -o igraph_set.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c igraph_stack.c -o igraph_stack.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c igraph_strvector.c -o igraph_strvector.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c igraph_trie.c -o igraph_trie.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c infomap.cc -o infomap.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c infomap_FlowGraph.cc -o infomap_FlowGraph.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c infomap_Greedy.cc -o infomap_Greedy.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c infomap_Node.cc -o infomap_Node.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c interrupt.c -o interrupt.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c iterators.c -o iterators.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c lad.c -o lad.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c lapack.c -o lapack.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c layout.c -o layout.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c layout_dh.c -o layout_dh.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c layout_fr.c -o layout_fr.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c layout_gem.c -o layout_gem.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c layout_kk.c -o layout_kk.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c lsap.c -o lsap.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c matching.c -o matching.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c math.c -o math.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c matrix.c -o matrix.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c maximal_cliques.c -o maximal_cliques.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c memory.c -o memory.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c microscopic_update.c -o microscopic_update.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c mixing.c -o mixing.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c motifs.c -o motifs.o ==> default: motifs.c: In function ‘igraph_dyad_census’: ==> default: motifs.c:900:11: warning: overflow in implicit constant conversion [-Woverflow] ==> default: *null = IGRAPH_NAN; ==> default: ^ ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c operators.c -o operators.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c optimal_modularity.c -o optimal_modularity.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c other.c -o other.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c paths.c -o paths.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c plfit/error.c -o plfit/error.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c plfit/gss.c -o plfit/gss.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c plfit/kolmogorov.c -o plfit/kolmogorov.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c plfit/lbfgs.c -o plfit/lbfgs.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c plfit/options.c -o plfit/options.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c plfit/plfit.c -o plfit/plfit.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c plfit/zeta.c -o plfit/zeta.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pottsmodel_2.cpp -o pottsmodel_2.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c progress.c -o progress.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c prpack.cpp -o prpack.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c prpack/prpack_base_graph.cpp -o prpack/prpack_base_graph.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c prpack/prpack_igraph_graph.cpp -o prpack/prpack_igraph_graph.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c prpack/prpack_preprocessed_ge_graph.cpp -o prpack/prpack_preprocessed_ge_graph.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c prpack/prpack_preprocessed_gs_graph.cpp -o prpack/prpack_preprocessed_gs_graph.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c prpack/prpack_preprocessed_scc_graph.cpp -o prpack/prpack_preprocessed_scc_graph.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c prpack/prpack_preprocessed_schur_graph.cpp -o prpack/prpack_preprocessed_schur_graph.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c prpack/prpack_result.cpp -o prpack/prpack_result.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c prpack/prpack_solver.cpp -o prpack/prpack_solver.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c prpack/prpack_utils.cpp -o prpack/prpack_utils.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qsort.c -o qsort.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qsort_r.c -o qsort_r.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c random.c -o random.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c random_walk.c -o random_walk.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c sbm.c -o sbm.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c scan.c -o scan.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c scg.c -o scg.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c scg_approximate_methods.c -o scg_approximate_methods.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c scg_exact_scg.c -o scg_exact_scg.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c scg_kmeans.c -o scg_kmeans.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c scg_optimal_method.c -o scg_optimal_method.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c scg_utils.c -o scg_utils.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c separators.c -o separators.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c sir.c -o sir.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c spanning_trees.c -o spanning_trees.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c sparsemat.c -o sparsemat.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c spectral_properties.c -o spectral_properties.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c spmatrix.c -o spmatrix.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c st-cuts.c -o st-cuts.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c statusbar.c -o statusbar.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c structural_properties.c -o structural_properties.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c structure_generators.c -o structure_generators.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c sugiyama.c -o sugiyama.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c topology.c -o topology.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c triangles.c -o triangles.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c type_indexededgelist.c -o type_indexededgelist.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c types.c -o types.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c vector.c -o vector.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c vector_ptr.c -o vector_ptr.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c version.c -o version.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c visitors.c -o visitors.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c walktrap.cpp -o walktrap.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c walktrap_communities.cpp -o walktrap_communities.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c walktrap_graph.cpp -o walktrap_graph.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c walktrap_heap.cpp -o walktrap_heap.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c zeroin.c -o zeroin.o ==> default: gfortran -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -c dgetv0.f -o dgetv0.o ==> default: gfortran -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -c dlaqrb.f -o dlaqrb.o ==> default: gfortran -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -c dmout.f -o dmout.o ==> default: gfortran -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -c dnaitr.f -o dnaitr.o ==> default: gfortran -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -c dnapps.f -o dnapps.o ==> default: gfortran -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -c dnaup2.f -o dnaup2.o ==> default: gfortran -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -c dnaupd.f -o dnaupd.o ==> default: gfortran -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -c dnconv.f -o dnconv.o ==> default: gfortran -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -c dneigh.f -o dneigh.o ==> default: gfortran -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -c dneupd.f -o dneupd.o ==> default: gfortran -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -c dngets.f -o dngets.o ==> default: gfortran -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -c dsaitr.f -o dsaitr.o ==> default: gfortran -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -c dsapps.f -o dsapps.o ==> default: gfortran -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -c dsaup2.f -o dsaup2.o ==> default: gfortran -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -c dsaupd.f -o dsaupd.o ==> default: gfortran -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -c dsconv.f -o dsconv.o ==> default: gfortran -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -c dseigt.f -o dseigt.o ==> default: gfortran -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -c dsesrt.f -o dsesrt.o ==> default: gfortran -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -c dseupd.f -o dseupd.o ==> default: gfortran -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -c dsgets.f -o dsgets.o ==> default: gfortran -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -c dsortc.f -o dsortc.o ==> default: gfortran -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -c dsortr.f -o dsortr.o ==> default: gfortran -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -c dstatn.f -o dstatn.o ==> default: gfortran -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -c dstats.f -o dstats.o ==> default: gfortran -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -c dstqrb.f -o dstqrb.o ==> default: gfortran -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -c dvout.f -o dvout.o ==> default: gfortran -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -c ivout.f -o ivout.o ==> default: gfortran -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -c second.f -o second.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/amd/amd_1.c -o glpk/amd/amd_1.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/amd/amd_2.c -o glpk/amd/amd_2.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/amd/amd_aat.c -o glpk/amd/amd_aat.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/amd/amd_control.c -o glpk/amd/amd_control.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/amd/amd_defaults.c -o glpk/amd/amd_defaults.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/amd/amd_dump.c -o glpk/amd/amd_dump.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/amd/amd_info.c -o glpk/amd/amd_info.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/amd/amd_order.c -o glpk/amd/amd_order.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/amd/amd_post_tree.c -o glpk/amd/amd_post_tree.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/amd/amd_postorder.c -o glpk/amd/amd_postorder.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/amd/amd_preprocess.c -o glpk/amd/amd_preprocess.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/amd/amd_valid.c -o glpk/amd/amd_valid.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/colamd/colamd.c -o glpk/colamd/colamd.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpapi01.c -o glpk/glpapi01.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpapi02.c -o glpk/glpapi02.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpapi03.c -o glpk/glpapi03.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpapi04.c -o glpk/glpapi04.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpapi05.c -o glpk/glpapi05.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpapi06.c -o glpk/glpapi06.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpapi07.c -o glpk/glpapi07.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpapi08.c -o glpk/glpapi08.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpapi09.c -o glpk/glpapi09.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpapi10.c -o glpk/glpapi10.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpapi11.c -o glpk/glpapi11.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpapi12.c -o glpk/glpapi12.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpapi13.c -o glpk/glpapi13.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpapi14.c -o glpk/glpapi14.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpapi15.c -o glpk/glpapi15.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpapi16.c -o glpk/glpapi16.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpapi17.c -o glpk/glpapi17.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpapi18.c -o glpk/glpapi18.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpapi19.c -o glpk/glpapi19.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpavl.c -o glpk/glpavl.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpbfd.c -o glpk/glpbfd.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpbfx.c -o glpk/glpbfx.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpcpx.c -o glpk/glpcpx.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpdmp.c -o glpk/glpdmp.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpdmx.c -o glpk/glpdmx.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpenv01.c -o glpk/glpenv01.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpenv02.c -o glpk/glpenv02.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpenv03.c -o glpk/glpenv03.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpenv04.c -o glpk/glpenv04.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpenv05.c -o glpk/glpenv05.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpenv06.c -o glpk/glpenv06.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpenv07.c -o glpk/glpenv07.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpenv08.c -o glpk/glpenv08.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpfhv.c -o glpk/glpfhv.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpgmp.c -o glpk/glpgmp.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glphbm.c -o glpk/glphbm.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpini01.c -o glpk/glpini01.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpini02.c -o glpk/glpini02.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpios01.c -o glpk/glpios01.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpios02.c -o glpk/glpios02.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpios03.c -o glpk/glpios03.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpios04.c -o glpk/glpios04.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpios05.c -o glpk/glpios05.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpios06.c -o glpk/glpios06.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpios07.c -o glpk/glpios07.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpios08.c -o glpk/glpios08.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpios09.c -o glpk/glpios09.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpios10.c -o glpk/glpios10.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpios11.c -o glpk/glpios11.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpios12.c -o glpk/glpios12.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpipm.c -o glpk/glpipm.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glplib01.c -o glpk/glplib01.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glplib02.c -o glpk/glplib02.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glplib03.c -o glpk/glplib03.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glplpf.c -o glpk/glplpf.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glplpx01.c -o glpk/glplpx01.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glplpx02.c -o glpk/glplpx02.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glplpx03.c -o glpk/glplpx03.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpluf.c -o glpk/glpluf.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glplux.c -o glpk/glplux.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpmat.c -o glpk/glpmat.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpmpl01.c -o glpk/glpmpl01.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpmpl02.c -o glpk/glpmpl02.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpmpl03.c -o glpk/glpmpl03.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpmpl04.c -o glpk/glpmpl04.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpmpl05.c -o glpk/glpmpl05.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpmpl06.c -o glpk/glpmpl06.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpmps.c -o glpk/glpmps.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpnet01.c -o glpk/glpnet01.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpnet02.c -o glpk/glpnet02.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpnet03.c -o glpk/glpnet03.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpnet04.c -o glpk/glpnet04.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpnet05.c -o glpk/glpnet05.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpnet06.c -o glpk/glpnet06.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpnet07.c -o glpk/glpnet07.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpnet08.c -o glpk/glpnet08.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpnet09.c -o glpk/glpnet09.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpnpp01.c -o glpk/glpnpp01.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpnpp02.c -o glpk/glpnpp02.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpnpp03.c -o glpk/glpnpp03.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpnpp04.c -o glpk/glpnpp04.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpnpp05.c -o glpk/glpnpp05.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpqmd.c -o glpk/glpqmd.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glprgr.c -o glpk/glprgr.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glprng01.c -o glpk/glprng01.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glprng02.c -o glpk/glprng02.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpscf.c -o glpk/glpscf.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpscl.c -o glpk/glpscl.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpsdf.c -o glpk/glpsdf.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpspm.c -o glpk/glpspm.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpspx01.c -o glpk/glpspx01.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpspx02.c -o glpk/glpspx02.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpsql.c -o glpk/glpsql.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpssx01.c -o glpk/glpssx01.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glpssx02.c -o glpk/glpssx02.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c glpk/glptsp.c -o glpk/glptsp.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c simpleraytracer/Color.cpp -o simpleraytracer/Color.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c simpleraytracer/Light.cpp -o simpleraytracer/Light.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c simpleraytracer/Point.cpp -o simpleraytracer/Point.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c simpleraytracer/RIgraphRay.cpp -o simpleraytracer/RIgraphRay.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c simpleraytracer/Ray.cpp -o simpleraytracer/Ray.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c simpleraytracer/RayTracer.cpp -o simpleraytracer/RayTracer.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c simpleraytracer/RayVector.cpp -o simpleraytracer/RayVector.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c simpleraytracer/Shape.cpp -o simpleraytracer/Shape.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c simpleraytracer/Sphere.cpp -o simpleraytracer/Sphere.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c simpleraytracer/Triangle.cpp -o simpleraytracer/Triangle.o ==> default: g++ -I/usr/share/R/include -DNDEBUG -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c simpleraytracer/unit_limiter.cpp -o simpleraytracer/unit_limiter.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c uuid/R.c -o uuid/R.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c uuid/clear.c -o uuid/clear.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c uuid/compare.c -o uuid/compare.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c uuid/copy.c -o uuid/copy.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c uuid/gen_uuid.c -o uuid/gen_uuid.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c uuid/isnull.c -o uuid/isnull.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c uuid/pack.c -o uuid/pack.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c uuid/parse.c -o uuid/parse.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c uuid/unpack.c -o uuid/unpack.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c uuid/unparse.c -o uuid/unparse.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rinterface.c -o rinterface.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rinterface_extra.c -o rinterface_extra.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"@VERSION@\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c lazyeval.c -o lazyeval.o ==> default: g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o igraph.so AMD/Source/amd.o AMD/Source/amd_1.o AMD/Source/amd_2.o AMD/Source/amd_aat.o AMD/Source/amd_control.o AMD/Source/amd_defaults.o AMD/Source/amd_dump.o AMD/Source/amd_global.o AMD/Source/amd_info.o AMD/Source/amd_order.o AMD/Source/amd_post_tree.o AMD/Source/amd_postorder.o AMD/Source/amd_preprocess.o AMD/Source/amd_valid.o AMD/Source/amdbar.o CHOLMOD/Check/cholmod_check.o CHOLMOD/Check/cholmod_read.o CHOLMOD/Check/cholmod_write.o CHOLMOD/Cholesky/cholmod_amd.o CHOLMOD/Cholesky/cholmod_analyze.o CHOLMOD/Cholesky/cholmod_colamd.o CHOLMOD/Cholesky/cholmod_etree.o CHOLMOD/Cholesky/cholmod_factorize.o CHOLMOD/Cholesky/cholmod_postorder.o CHOLMOD/Cholesky/cholmod_rcond.o CHOLMOD/Cholesky/cholmod_resymbol.o CHOLMOD/Cholesky/cholmod_rowcolcounts.o CHOLMOD/Cholesky/cholmod_rowfac.o CHOLMOD/Cholesky/cholmod_solve.o CHOLMOD/Cholesky/cholmod_spsolve.o CHOLMOD/Core/cholmod_aat.o CHOLMOD/Core/cholmod_add.o CHOLMOD/Core/cholmod_ban ==> default: d.o CHOLMOD/Core/cholmod_change_factor.o CHOLMOD/Core/cholmod_common.o CHOLMOD/Core/cholmod_complex.o CHOLMOD/Core/cholmod_copy.o CHOLMOD/Core/cholmod_dense.o CHOLMOD/Core/cholmod_error.o CHOLMOD/Core/cholmod_factor.o CHOLMOD/Core/cholmod_memory.o CHOLMOD/Core/cholmod_sparse.o CHOLMOD/Core/cholmod_transpose.o CHOLMOD/Core/cholmod_triplet.o CHOLMOD/Core/cholmod_version.o CHOLMOD/MatrixOps/cholmod_drop.o CHOLMOD/MatrixOps/cholmod_horzcat.o CHOLMOD/MatrixOps/cholmod_norm.o CHOLMOD/MatrixOps/cholmod_scale.o CHOLMOD/MatrixOps/cholmod_sdmult.o CHOLMOD/MatrixOps/cholmod_ssmult.o CHOLMOD/MatrixOps/cholmod_submatrix.o CHOLMOD/MatrixOps/cholmod_symmetry.o CHOLMOD/MatrixOps/cholmod_vertcat.o CHOLMOD/Modify/cholmod_rowadd.o CHOLMOD/Modify/cholmod_rowdel.o CHOLMOD/Modify/cholmod_updown.o CHOLMOD/Partition/cholmod_camd.o CHOLMOD/Partition/cholmod_ccolamd.o CHOLMOD/Partition/cholmod_csymamd.o CHOLMOD/Partition/cholmod_metis.o CHOLMOD/Partition/cholmod_nesdis.o CHOLMOD/Supernodal/cholmod_super_numeric.o CHOLM ==> default: OD/Supernodal/cholmod_super_solve.o CHOLMOD/Supernodal/cholmod_super_symbolic.o COLAMD/Source/colamd.o COLAMD/Source/colamd_global.o DensityGrid.o DensityGrid_3d.o NetDataTypes.o NetRoutines.o SuiteSparse_config/SuiteSparse_config.o adjlist.o arpack.o array.o atlas.o attributes.o basic_query.o bfgs.o bigint.o bignum.o bipartite.o blas.o bliss.o bliss_eqrefhash.o bliss_graph.o bliss_heap.o bliss_orbit.o bliss_partition.o bliss_timer.o bliss_utils.o cattributes.o centrality.o cliques.o clustertool.o cocitation.o cohesive_blocks.o community.o complex.o components.o conversion.o cores.o cs/cs_add.o cs/cs_amd.o cs/cs_chol.o cs/cs_cholsol.o cs/cs_compress.o cs/cs_counts.o cs/cs_cumsum.o cs/cs_dfs.o cs/cs_dmperm.o cs/cs_droptol.o cs/cs_dropzeros.o cs/cs_dupl.o cs/cs_entry.o cs/cs_ereach.o cs/cs_etree.o cs/cs_fkeep.o cs/cs_gaxpy.o cs/cs_happly.o cs/cs_house.o cs/cs_ipvec.o cs/cs_leaf.o cs/cs_load.o cs/cs_lsolve.o cs/cs_ltsolve.o cs/cs_lu.o cs/cs_lusol.o cs/cs_malloc.o cs/cs_maxtrans.o cs/cs_multiply.o ==> default: cs/cs_norm.o cs/cs_permute.o cs/cs_pinv.o cs/cs_post.o cs/cs_print.o cs/cs_pvec.o cs/cs_qr.o cs/cs_qrsol.o cs/cs_randperm.o cs/cs_reach.o cs/cs_scatter.o cs/cs_scc.o cs/cs_schol.o cs/cs_spsolve.o cs/cs_sqr.o cs/cs_symperm.o cs/cs_tdfs.o cs/cs_transpose.o cs/cs_updown.o cs/cs_usolve.o cs/cs_util.o cs/cs_utsolve.o decomposition.o distances.o dotproduct.o dqueue.o drl_graph.o drl_graph_3d.o drl_layout.o drl_layout_3d.o drl_parse.o eigen.o embedding.o fast_community.o feedback_arc_set.o flow.o foreign-dl-lexer.o foreign-dl-parser.o foreign-gml-lexer.o foreign-gml-parser.o foreign-graphml.o foreign-lgl-lexer.o foreign-lgl-parser.o foreign-ncol-lexer.o foreign-ncol-parser.o foreign-pajek-lexer.o foreign-pajek-parser.o foreign.o forestfire.o fortran_intrinsics.o games.o gengraph_box_list.o gengraph_degree_sequence.o gengraph_graph_molloy_hash.o gengraph_graph_molloy_optimized.o gengraph_mr-connected.o gengraph_powerlaw.o gengraph_random.o glet.o glpk_support.o gml_tree.o hacks.o heap.o igraph_bucket ==> default: s.o igraph_error.o igraph_estack.o igraph_fixed_vectorlist.o igraph_grid.o igraph_hashtable.o igraph_heap.o igraph_hrg.o igraph_hrg_types.o igraph_marked_queue.o igraph_psumtree.o igraph_set.o igraph_stack.o igraph_strvector.o igraph_trie.o infomap.o infomap_FlowGraph.o infomap_Greedy.o infomap_Node.o interrupt.o iterators.o lad.o lapack.o layout.o layout_dh.o layout_fr.o layout_gem.o layout_kk.o lsap.o matching.o math.o matrix.o maximal_cliques.o memory.o microscopic_update.o mixing.o motifs.o operators.o optimal_modularity.o other.o paths.o plfit/error.o plfit/gss.o plfit/kolmogorov.o plfit/lbfgs.o plfit/options.o plfit/plfit.o plfit/zeta.o pottsmodel_2.o progress.o prpack.o prpack/prpack_base_graph.o prpack/prpack_igraph_graph.o prpack/prpack_preprocessed_ge_graph.o prpack/prpack_preprocessed_gs_graph.o prpack/prpack_preprocessed_scc_graph.o prpack/prpack_preprocessed_schur_graph.o prpack/prpack_result.o prpack/prpack_solver.o prpack/prpack_utils.o qsort.o qsort_r.o random.o random_walk.o s ==> default: bm.o scan.o scg.o scg_approximate_methods.o scg_exact_scg.o scg_kmeans.o scg_optimal_method.o scg_utils.o separators.o sir.o spanning_trees.o sparsemat.o spectral_properties.o spmatrix.o st-cuts.o statusbar.o structural_properties.o structure_generators.o sugiyama.o topology.o triangles.o type_indexededgelist.o types.o vector.o vector_ptr.o version.o visitors.o walktrap.o walktrap_communities.o walktrap_graph.o walktrap_heap.o zeroin.o dgetv0.o dlaqrb.o dmout.o dnaitr.o dnapps.o dnaup2.o dnaupd.o dnconv.o dneigh.o dneupd.o dngets.o dsaitr.o dsapps.o dsaup2.o dsaupd.o dsconv.o dseigt.o dsesrt.o dseupd.o dsgets.o dsortc.o dsortr.o dstatn.o dstats.o dstqrb.o dvout.o ivout.o second.o glpk/amd/amd_1.o glpk/amd/amd_2.o glpk/amd/amd_aat.o glpk/amd/amd_control.o glpk/amd/amd_defaults.o glpk/amd/amd_dump.o glpk/amd/amd_info.o glpk/amd/amd_order.o glpk/amd/amd_post_tree.o glpk/amd/amd_postorder.o glpk/amd/amd_preprocess.o glpk/amd/amd_valid.o glpk/colamd/colamd.o glpk/glpapi01.o glpk/glpapi02.o glpk/glp ==> default: api03.o glpk/glpapi04.o glpk/glpapi05.o glpk/glpapi06.o glpk/glpapi07.o glpk/glpapi08.o glpk/glpapi09.o glpk/glpapi10.o glpk/glpapi11.o glpk/glpapi12.o glpk/glpapi13.o glpk/glpapi14.o glpk/glpapi15.o glpk/glpapi16.o glpk/glpapi17.o glpk/glpapi18.o glpk/glpapi19.o glpk/glpavl.o glpk/glpbfd.o glpk/glpbfx.o glpk/glpcpx.o glpk/glpdmp.o glpk/glpdmx.o glpk/glpenv01.o glpk/glpenv02.o glpk/glpenv03.o glpk/glpenv04.o glpk/glpenv05.o glpk/glpenv06.o glpk/glpenv07.o glpk/glpenv08.o glpk/glpfhv.o glpk/glpgmp.o glpk/glphbm.o glpk/glpini01.o glpk/glpini02.o glpk/glpios01.o glpk/glpios02.o glpk/glpios03.o glpk/glpios04.o glpk/glpios05.o glpk/glpios06.o glpk/glpios07.o glpk/glpios08.o glpk/glpios09.o glpk/glpios10.o glpk/glpios11.o glpk/glpios12.o glpk/glpipm.o glpk/glplib01.o glpk/glplib02.o glpk/glplib03.o glpk/glplpf.o glpk/glplpx01.o glpk/glplpx02.o glpk/glplpx03.o glpk/glpluf.o glpk/glplux.o glpk/glpmat.o glpk/glpmpl01.o glpk/glpmpl02.o glpk/glpmpl03.o glpk/glpmpl04.o glpk/glpmpl05.o glpk/glpmpl06.o glpk ==> default: /glpmps.o glpk/glpnet01.o glpk/glpnet02.o glpk/glpnet03.o glpk/glpnet04.o glpk/glpnet05.o glpk/glpnet06.o glpk/glpnet07.o glpk/glpnet08.o glpk/glpnet09.o glpk/glpnpp01.o glpk/glpnpp02.o glpk/glpnpp03.o glpk/glpnpp04.o glpk/glpnpp05.o glpk/glpqmd.o glpk/glprgr.o glpk/glprng01.o glpk/glprng02.o glpk/glpscf.o glpk/glpscl.o glpk/glpsdf.o glpk/glpspm.o glpk/glpspx01.o glpk/glpspx02.o glpk/glpsql.o glpk/glpssx01.o glpk/glpssx02.o glpk/glptsp.o simpleraytracer/Color.o simpleraytracer/Light.o simpleraytracer/Point.o simpleraytracer/RIgraphRay.o simpleraytracer/Ray.o simpleraytracer/RayTracer.o simpleraytracer/RayVector.o simpleraytracer/Shape.o simpleraytracer/Sphere.o simpleraytracer/Triangle.o simpleraytracer/unit_limiter.o uuid/R.o uuid/clear.o uuid/compare.o uuid/copy.o uuid/gen_uuid.o uuid/isnull.o uuid/pack.o uuid/parse.o uuid/unpack.o uuid/unparse.o rinterface.o rinterface_extra.o lazyeval.o -lxml2 -lgfortran -lm -lquadmath -llapack -lblas -lgfortran -lm -lquadmath -L/usr/lib/R/lib -lR ==> default: installing to /usr/local/lib/R/site-library/igraph/libs ==> default: ** R ==> default: ** demo ==> default: ** inst ==> default: ** preparing package for lazy loading ==> default: ** help ==> default: *** installing help indices ==> default: ** building package indices ==> default: ** testing if installed package can be loaded ==> default: * DONE (igraph) ==> default: * installing *source* package ‘lintr’ ... ==> default: ** package ‘lintr’ successfully unpacked and MD5 sums checked ==> default: ** R ==> default: ** inst ==> default: ** preparing package for lazy loading ==> default: ** help ==> default: *** installing help indices ==> default: ** building package indices ==> default: ** installing vignettes ==> default: ** testing if installed package can be loaded ==> default: * DONE (lintr) ==> default: The downloaded source packages are in ==> default: ‘/tmp/RtmpeaC97S/downloaded_packages’ ==> default: Warning message: ==> default: In install.packages("devtools", repos = "http://cran.rstudio.com/", : ==> default: ==> default: ==> default: installation of package ‘hunspell’ had non-zero exit status ==> default: > ==> default: > ==> default: mesg: ==> default: ttyname failed ==> default: : ==> default: Inappropriate ioctl for device ==> default: R version 3.3.1 (2016-06-21) -- "Bug in Your Hair" ==> default: Copyright (C) 2016 The R Foundation for Statistical Computing ==> default: Platform: x86_64-pc-linux-gnu (64-bit) ==> default: R is free software and comes with ABSOLUTELY NO WARRANTY. ==> default: You are welcome to redistribute it under certain conditions. ==> default: Type 'license()' or 'licence()' for distribution details. ==> default: Natural language support but running in an English locale ==> default: ==> default: R is a collaborative project with many contributors. ==> default: Type 'contributors()' for more information and ==> default: 'citation()' on how to cite R or R packages in publications. ==> default: Type 'demo()' for some demos, 'help()' for on-line help, or ==> default: 'help.start()' for an HTML browser interface to help. ==> default: Type 'q()' to quit R. ==> default: > ==> default: install.packages('gtools', repos='http://cran.rstudio.com/', dependencies = TRUE) ==> default: Installing package into ‘/usr/local/lib/R/site-library’ ==> default: (as ‘lib’ is unspecified) ==> default: trying URL 'http://cran.rstudio.com/src/contrib/gtools_3.5.0.tar.gz' ==> default: Content type 'application/x-gzip' ==> default: length 64855 bytes (63 KB) ==> default: = ==> default: = ==> default: = ==> default: = ==> 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-D_FORTIFY_SOURCE=2 -g -c setTCPNoDelay.c -o setTCPNoDelay.o ==> default: gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o gtools.so roman2int.o setTCPNoDelay.o -L/usr/lib/R/lib -lR ==> default: installing to /usr/local/lib/R/site-library/gtools/libs ==> default: ** R ==> default: ** data ==> default: ** inst ==> default: ** preparing package for lazy loading ==> default: ** help ==> default: *** installing help indices ==> default: ** building package indices ==> default: ** testing if installed package can be loaded ==> default: * DONE (gtools) ==> default: The downloaded source packages are in ==> default: ‘/tmp/RtmpQMsrDa/downloaded_packages’ ==> default: > ==> default: > ==> default: mesg: ==> default: ttyname failed ==> default: : ==> default: Inappropriate ioctl for device ==> default: R version 3.3.1 (2016-06-21) -- "Bug in Your Hair" ==> default: Copyright (C) 2016 The R Foundation for Statistical Computing ==> default: Platform: x86_64-pc-linux-gnu (64-bit) ==> default: R is free software and comes with ABSOLUTELY NO WARRANTY. ==> default: You are welcome to redistribute it under certain conditions. ==> default: Type 'license()' or 'licence()' for distribution details. ==> default: Natural language support but running in an English locale ==> default: ==> default: R is a collaborative project with many contributors. ==> default: Type 'contributors()' for more information and ==> default: 'citation()' on how to cite R or R packages in publications. ==> default: Type 'demo()' for some demos, 'help()' for on-line help, or ==> default: 'help.start()' for an HTML browser interface to help. ==> default: Type 'q()' to quit R. ==> default: > ==> default: devtools::install_github('blernermhc/RDataTracker') ==> default: Downloading GitHub repo blernermhc/RDataTracker@master ==> default: from URL https://api.github.com/repos/blernermhc/RDataTracker/zipball/master ==> default: Installing RDataTracker ==> default: trying URL 'https://cran.rstudio.com/src/contrib/XML_3.98-1.4.tar.gz' ==> default: Content type 'application/x-gzip' ==> default: length 1599214 bytes (1.5 MB) ==> default: = ==> default: = ==> default: = ==> default: = ==> default: = ==> default: = ==> default: = ==> default: = ==> default: = ==> default: = ==> default: = ==> default: = ==> default: = ==> default: = ==> default: = ==> default: = ==> default: = ==> default: = ==> default: = ==> default: = ==> default: = ==> default: = ==> default: = ==> default: = ==> default: = ==> default: = ==> default: = ==> default: = ==> default: = ==> default: = ==> default: = ==> default: = ==> default: = ==> default: = ==> default: = ==> default: = ==> default: = ==> default: = ==> default: = ==> default: = ==> default: = ==> default: = ==> default: = ==> default: = ==> default: = ==> default: = ==> default: = ==> default: = ==> default: = ==> default: = ==> default: downloaded 1.5 MB ==> default: Installing XML ==> default: '/usr/lib/R/bin/R' --no-site-file --no-environ --no-save --no-restore --quiet \ ==> default: CMD INSTALL '/tmp/RtmprN7tyl/devtools272a2a861275/XML' \ ==> default: --library='/usr/local/lib/R/site-library' --install-tests ==> default: * installing *source* package ‘XML’ ... ==> default: ** package ‘XML’ successfully unpacked and MD5 sums checked ==> default: checking for gcc... ==> default: gcc ==> default: checking for C compiler default output file name... ==> default: a.out ==> default: checking whether the C compiler works... ==> default: yes ==> default: checking whether we are cross compiling... ==> default: no ==> default: checking for suffix of executables... ==> default: checking for suffix of object files... ==> default: o ==> default: checking whether we are using the GNU C compiler... ==> default: yes ==> default: checking whether gcc accepts -g... ==> default: yes ==> default: checking for gcc option to accept ISO C89... ==> default: none needed ==> default: checking how to run the C preprocessor... ==> default: gcc -E ==> default: checking for sed... ==> default: /bin/sed ==> default: checking for pkg-config... ==> default: /usr/bin/pkg-config ==> default: checking for xml2-config... ==> default: /usr/bin/xml2-config ==> default: USE_XML2 = yes ==> default: SED_EXTENDED_ARG: -E ==> default: Minor 9, Patch 3 for 2.9.3 ==> default: Located parser file -I/usr/include/libxml2/parser.h ==> default: Checking for 1.8: -I/usr/include/libxml2 ==> default: Using libxml2.* ==> default: checking for gzopen in -lz... ==> default: yes ==> default: checking for xmlParseFile in -lxml2... ==> default: yes ==> default: checking for xmlHashSize in -lxml2... ==> default: yes ==> default: Using built-in xmlHashSize ==> default: Checking DTD parsing (presence of externalSubset)... ==> default: checking for xmlHashSize in -lxml2... ==> default: yes ==> default: Found xmlHashSize ==> default: checking for xmlOutputBufferCreateBuffer in -lxml2... ==> default: yes ==> default: have xmlOutputBufferCreateBuffer() ==> default: checking for xmlDocDumpFormatMemoryEnc in -lxml2... ==> default: yes ==> default: checking libxml/xmlversion.h usability... ==> default: yes ==> default: checking libxml/xmlversion.h presence... ==> default: yes ==> default: checking for libxml/xmlversion.h... ==> default: yes ==> default: Expat: FALSE ==> default: Checking for return type of xmlHashScan element routine. ==> default: No return value for xmlHashScan ==> default: xmlNs has a context field ==> default: Checking for cetype_t enumeration ==> default: No cetype_t enumeration defined in R headers. ==> default: checking for xmlsec1-config... ==> default: no ==> default: nodegc default ==> default: xml-debug default ==> default: Version has XML_WITH_ZLIB ==> default: Version has xmlHasFeature() ==> default: **************************************** ==> default: Configuration information: ==> default: Libxml settings ==> default: libxml include directory: -I/usr/include/libxml2 ==> default: libxml library directory: -lxml2 -lz -lxml2 ==> default: libxml 2: -DLIBXML2=1 ==> default: Compilation flags: -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 ==> default: Link flags: -lxml2 -lz -lxml2 ==> default: **************************************** ==> default: configure: creating ./config.status ==> default: config.status: creating src/Makevars ==> default: config.status: creating R/supports.R ==> default: config.status: creating inst/scripts/RSXML.csh ==> default: config.status: creating inst/scripts/RSXML.bsh ==> default: ** libs ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c DocParse.c -o DocParse.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c EventParse.c -o EventParse.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ExpatParse.c -o ExpatParse.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c HTMLParse.c -o HTMLParse.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c NodeGC.c -o NodeGC.o ==> default: NodeGC.c: In function ‘clearNodeMemoryManagement’: ==> default: NodeGC.c:385:96: warning: comparison between pointer and integer ==> default: int isOurs = (a = node->_private != &R_XML_NoMemoryMgmt) && (b = ((int *)(node->_private))[1] == (int *) &R_XML_MemoryMgrMarker); ==> default: ^ ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c RSDTD.c -o RSDTD.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c RUtils.c -o RUtils.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Rcatalog.c -o Rcatalog.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Utils.c -o Utils.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c XMLEventParse.c -o XMLEventParse.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c XMLHashTree.c -o XMLHashTree.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c XMLTree.c -o XMLTree.o ==> default: XMLTree.c: In function ‘R_xmlSearchNs’: ==> default: XMLTree.c:1695:39: warning: comparison of distinct pointer types lacks a cast ==> default: xmlDocPtr doc = (xmlDocPtr) r_doc == NULL_USER_OBJECT ? NULL : R_ExternalPtrAddr(r_doc); ==> default: ^ ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c fixNS.c -o fixNS.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c libxmlFeatures.c -o libxmlFeatures.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c schema.c -o schema.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c xmlsecurity.c -o xmlsecurity.o ==> default: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c xpath.c -o xpath.o ==> default: gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o XML.so DocParse.o EventParse.o ExpatParse.o HTMLParse.o NodeGC.o RSDTD.o RUtils.o Rcatalog.o Utils.o XMLEventParse.o XMLHashTree.o XMLTree.o fixNS.o libxmlFeatures.o schema.o xmlsecurity.o xpath.o -lxml2 -lz -lxml2 -L/usr/lib/R/lib -lR ==> default: installing to /usr/local/lib/R/site-library/XML/libs ==> default: ** R ==> default: ** inst ==> default: ** preparing package for lazy loading ==> default: Creating a generic function for ‘source’ from package ‘base’ in package ‘XML’ ==> default: in method for ‘xmlAttrsToDataFrame’ with signature ‘"AsIs"’: no definition for class “AsIs” ==> default: in method for ‘readKeyValueDB’ with signature ‘"AsIs"’: no definition for class “AsIs” ==> default: in method for ‘readSolrDoc’ with signature ‘"AsIs"’: no definition for class “AsIs” ==> default: ** help ==> default: *** installing help indices ==> default: ** building package indices ==> default: ** testing if installed package can be loaded ==> default: * DONE (XML) ==> default: '/usr/lib/R/bin/R' --no-site-file --no-environ --no-save --no-restore --quiet \ ==> default: CMD INSTALL \ ==> default: '/tmp/RtmprN7tyl/devtools272a6129d8b8/End-to-end-provenance-RDataTracker-790080e' \ ==> default: --library='/usr/local/lib/R/site-library' --install-tests ==> default: * installing *source* package ‘RDataTracker’ ... ==> default: ** R ==> default: ** inst ==> default: ** preparing package for lazy loading ==> default: ** help ==> default: *** installing help indices ==> default: ** building package indices ==> default: ** installing vignettes ==> default: ==> default: ==> default: ‘UsingDDGExplorer.Rnw’ ==> default: ==> default: ==> default: ==> default: ‘UsingRDataTracker.Rnw’ ==> default: ==> default: ** testing if installed package can be loaded ==> default: * DONE (RDataTracker) ==> default: > ==> default: > ==> default: Installing DDG... ==> default: Cloning into 'DDG-Explorer'... ==> default: Buildfile: /home/vagrant/DDG-Explorer/build.xml ==> default: ==> default: init: ==> default: [mkdir] Created dir: /home/vagrant/DDG-Explorer/bin ==> default: [copy] Copying 1 file to /home/vagrant/DDG-Explorer/bin ==> default: ==> default: build-project: ==> default: [echo] ddg-explorer: /home/vagrant/DDG-Explorer/build.xml ==> default: [javac] Compiling 110 source files to /home/vagrant/DDG-Explorer/bin ==> default: [javac] Note: Some input files use unchecked or unsafe operations. ==> default: [javac] Note: Recompile with -Xlint:unchecked for details. ==> default: ==> default: BUILD SUCCESSFUL ==> default: Total time: 4 seconds ==> default: Buildfile: /home/vagrant/DDG-Explorer/build.xml ==> default: ==> default: buildinfo: ==> default: [propertyfile] Creating new property file: /home/vagrant/DDG-Explorer/bin/.properties ==> default: ==> default: ddg-explorer: ==> default: [jar] Building jar: /home/vagrant/DDG-Explorer/tmp_ddg-explorer.jar ==> default: [move] Moving 1 file to /home/vagrant/DDG-Explorer ==> default: ==> default: BUILD SUCCESSFUL ==> default: Total time: 2 seconds ==> default: Running provisioner: unix_reboot... ==> default: Issuing command: shutdown -r now ==> default: mesg: ==> default: ttyname failed ==> default: : ==> default: Inappropriate ioctl for device ==> default: Launching remount_synced_folders action... ==> default: Mounting shared folders... default: /shared => ./shared default: /vagrant => . ~/Documents/Process/DataProvenance/RDataTracker-vagrant ->