diff --git a/plugin_config.txt b/plugin_config.txt
index 95fc79a..bf8d32a 100644
--- a/plugin_config.txt
+++ b/plugin_config.txt
@@ -8,7 +8,7 @@ my $VEP_PLUGIN_CONFIG = {
# https://github.com/ensembl-variation/VEP_plugins/blob/master/dbNSFP.pm
# Requires tabix-indexed data file as first param
# Field names are listed below and rendered as a multi-selectable autocomplete text field
- # Human, GRCh38 only
+ # Human, GRCh38 only (3.x), for GRCh37 use 2.9.x
{
"key" => "dbNSFP",
"label" => "dbNSFP",
@@ -20,7 +20,7 @@ my $VEP_PLUGIN_CONFIG = {
"requires_data" => 1,
"requires_install" => 1,
"params" => [
- #"/path/to/dbNSFP3.2a.txt.gz",
+ #"/path/to/dbNSFP3.4a.txt.gz",
"@*"
],
"species" => [
@@ -36,7 +36,7 @@ my $VEP_PLUGIN_CONFIG = {
'multiple' => 1,
'style' => 'height:150px',
'required' => 1,
- 'notes' => 'Field descriptions in dbNSFP README',
+ 'notes' => 'Field descriptions in dbNSFP README',
# "class" => "jquery-multiselect",
"values" => [
# "chr",
@@ -45,7 +45,7 @@ my $VEP_PLUGIN_CONFIG = {
# "alt",
# "aaref",
# "aaalt",
- # "rs_dbSNP146",
+ # "rs_dbSNP147",
# "hg19_chr",
# "hg19_pos(1-based)",
# "hg18_chr",
@@ -62,18 +62,18 @@ my $VEP_PLUGIN_CONFIG = {
# "Ensembl_transcriptid",
# "Ensembl_proteinid",
# "aapos",
- #"SIFT_score",
- #"SIFT_converted_rankscore",
- #"SIFT_pred",
+ # "SIFT_score",
+ # "SIFT_converted_rankscore",
+ # "SIFT_pred",
# "Uniprot_acc_Polyphen2",
# "Uniprot_id_Polyphen2",
# "Uniprot_aapos_Polyphen2",
- #"Polyphen2_HDIV_score",
- #"Polyphen2_HDIV_rankscore",
- #"Polyphen2_HDIV_pred",
- #"Polyphen2_HVAR_score",
- #"Polyphen2_HVAR_rankscore",
- #"Polyphen2_HVAR_pred",
+ # "Polyphen2_HDIV_score",
+ # "Polyphen2_HDIV_rankscore",
+ # "Polyphen2_HDIV_pred",
+ # "Polyphen2_HVAR_score",
+ # "Polyphen2_HVAR_rankscore",
+ # "Polyphen2_HVAR_pred",
"LRT_score",
"LRT_converted_rankscore",
"LRT_pred",
@@ -105,6 +105,16 @@ my $VEP_PLUGIN_CONFIG = {
"MetaLR_rankscore",
"MetaLR_pred",
"Reliability_index",
+ "M-CAP_score",
+ "M-CAP_rankscore",
+ "M-CAP_pred",
+ "REVEL_score",
+ "REVEL_rankscore",
+ "MutPred_score",
+ "MutPred_rankscore",
+ "MutPred_protID",
+ "MutPred_AAchange",
+ "MutPred_Top5features",
"CADD_raw",
"CADD_raw_rankscore",
"CADD_phred",
@@ -114,10 +124,11 @@ my $VEP_PLUGIN_CONFIG = {
"fathmm-MKL_coding_rankscore",
"fathmm-MKL_coding_pred",
"fathmm-MKL_coding_group",
+ "Eigen_coding_or_noncoding",
"Eigen-raw",
"Eigen-phred",
- "Eigen-raw_rankscore",
"Eigen-PC-raw",
+ "Eigen-PC-phred",
"Eigen-PC-raw_rankscore",
"GenoCanyon_score",
"GenoCanyon_score_rankscore",
@@ -221,7 +232,7 @@ my $VEP_PLUGIN_CONFIG = {
"clinvar_golden_stars",
# "Interpro_domain",
"GTEx_V6_gene",
- "GTEx_V6_tissue"
+ "GTEx_V6_tissue",
],
},
]