Skip unmapped BAM reads with coordinates

Sometimes a read has coordinates, but is not mapped (cf BWA), these are exceptions and now skipped

2021 update

Removed a number of bad memory leaks.

2020 update

Creating a tag to capture recent updates and permit Docker registration.

Incremental fixes here and there

v1.2.3

Add path to probable location of HTSlib and libBigWig directories

Updated to latest HTSLib

v1.2.2

Updated test files for VCF/BCF compliance

WiggleTools on Brew

WiggleTools can now be installed via the Homebrew and LinuxBrew package managers in a single command.

Clean build process

In view of allowing for automated deployment, we updated the dependencies to new libraries (htslib and libbigwig) and cleaned up the build process.

Updated release with static libraries

Hello all,

following some user reports, I've updated the binaries to statically link everything, at least for the linux version.

For MacOS, you will have to do first:
brew install gsl
brew link --force gsl

Enjoy,

The Ensembl Regulation Team

First binary release

We're trialling binary releases. Hope this is useful!

Note: For MacOS, you need to install the GSL libraries separately:

brew install gsl

Daniel