From 1fe8e3d040ae47447355d25c8286e8f69fbeeff0 Mon Sep 17 00:00:00 2001 From: Paulo Lins Date: Thu, 5 May 2022 11:51:57 +0100 Subject: [PATCH 1/2] add new array GPL19072 --- .../Funcgen/RunnableDB/ProbeMapping/Config/ImportArrays.pm | 1 + 1 file changed, 1 insertion(+) diff --git a/modules/Bio/EnsEMBL/Funcgen/RunnableDB/ProbeMapping/Config/ImportArrays.pm b/modules/Bio/EnsEMBL/Funcgen/RunnableDB/ProbeMapping/Config/ImportArrays.pm index c2b149407..8383d3b00 100644 --- a/modules/Bio/EnsEMBL/Funcgen/RunnableDB/ProbeMapping/Config/ImportArrays.pm +++ b/modules/Bio/EnsEMBL/Funcgen/RunnableDB/ProbeMapping/Config/ImportArrays.pm @@ -549,6 +549,7 @@ use vars qw( %Config ); 'GPL7801', 'GPL9060', 'GPL9074', + 'GPL19072', ], }, From 467c8e5db5f50f67d02a20bfbfed298de1f259fe Mon Sep 17 00:00:00 2001 From: Jyothish Date: Mon, 6 Jun 2022 11:20:44 +0000 Subject: [PATCH 2/2] use epigenome shortname for filtering --- modules/Bio/EnsEMBL/Funcgen/DBSQL/PeakCallingAdaptor.pm | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/modules/Bio/EnsEMBL/Funcgen/DBSQL/PeakCallingAdaptor.pm b/modules/Bio/EnsEMBL/Funcgen/DBSQL/PeakCallingAdaptor.pm index 5ed06098e..cd19a157b 100644 --- a/modules/Bio/EnsEMBL/Funcgen/DBSQL/PeakCallingAdaptor.pm +++ b/modules/Bio/EnsEMBL/Funcgen/DBSQL/PeakCallingAdaptor.pm @@ -193,7 +193,7 @@ sub _fetch_feature_set_filter_counts { eg.description, eg.is_project, ft.class, - epi.name, + epi.short_name, epi.description FROM experimental_group eg,