From d069b5e8ea5e70032d46c8027ad0093ec02bcf8f Mon Sep 17 00:00:00 2001 From: Tamara El Naboulsi Date: Tue, 8 Jun 2021 10:42:11 +0100 Subject: [PATCH] EnsemblGeneric_conf checks for ENSEMBL_ROOT_DIR and ENSEMBL_CSV_ROOT_DIR --- modules/Bio/EnsEMBL/Hive/PipeConfig/EnsemblGeneric_conf.pm | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/modules/Bio/EnsEMBL/Hive/PipeConfig/EnsemblGeneric_conf.pm b/modules/Bio/EnsEMBL/Hive/PipeConfig/EnsemblGeneric_conf.pm index 595200211..8899d65e5 100644 --- a/modules/Bio/EnsEMBL/Hive/PipeConfig/EnsemblGeneric_conf.pm +++ b/modules/Bio/EnsEMBL/Hive/PipeConfig/EnsemblGeneric_conf.pm @@ -61,7 +61,7 @@ sub default_options { # [bash] export -n ENSEMBL_CVS_ROOT_DIR # will stop exporting, but the value in current shell stays as it was # [tcsh] unsetenv ENSEMBL_CVS_ROOT_DIR # will destroy the variable even in current shell, and stop exporting - 'ensembl_cvs_root_dir' => $ENV{'ENSEMBL_CVS_ROOT_DIR'} || $self->o('ensembl_cvs_root_dir'), # it will make sense to set this variable if you are going to use ehive with ensembl + 'ensembl_cvs_root_dir' => $ENV{'ENSEMBL_ROOT_DIR'} || $self->o('ensembl_root_dir') || $ENV{'ENSEMBL_CVS_ROOT_DIR'} || $self->o('ensembl_cvs_root_dir'), # it will make sense to set this variable if you are going to use ehive with ensembl 'ensembl_release' => Bio::EnsEMBL::ApiVersion::software_version(), # snapshot of EnsEMBL Core API version. Please do not change if not sure. 'rel_suffix' => '', # an empty string by default, a letter otherwise