diff --git a/modules/t/test-genome-DBs/homo_sapiens/core/meta.txt b/modules/t/test-genome-DBs/homo_sapiens/core/meta.txt index 9971357..6919986 100644 --- a/modules/t/test-genome-DBs/homo_sapiens/core/meta.txt +++ b/modules/t/test-genome-DBs/homo_sapiens/core/meta.txt @@ -1,4 +1,4 @@ -1 \N schema_version 111 +1 \N schema_version 112 2 1 assembly.default NCBI34 3 1 species.taxonomy_id 9606 26 1 species.classification Homo sapiens @@ -130,3 +130,5 @@ 204 \N patch patch_109_110_b.sql|Add IS_PAR relationship to link X- and Y-PAR genes 205 \N patch patch_109_110_c.sql|Allow gene id to belong to multiple alt allele groups 206 \N patch patch_110_111_a.sql|schema_version +207 \N patch patch_111_112_a.sql|schema_version +208 \N patch patch_111_112_b.sql|Allow meta_value to be null diff --git a/modules/t/test-genome-DBs/homo_sapiens/core/table.sql b/modules/t/test-genome-DBs/homo_sapiens/core/table.sql index 5d77c3f..8bfd71c 100644 --- a/modules/t/test-genome-DBs/homo_sapiens/core/table.sql +++ b/modules/t/test-genome-DBs/homo_sapiens/core/table.sql @@ -486,11 +486,11 @@ CREATE TABLE `meta` ( `meta_id` int(11) NOT NULL AUTO_INCREMENT, `species_id` int(10) unsigned DEFAULT '1', `meta_key` varchar(40) NOT NULL, - `meta_value` varchar(255) NOT NULL, + `meta_value` varchar(255) DEFAULT NULL, PRIMARY KEY (`meta_id`), UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`), KEY `species_value_idx` (`species_id`,`meta_value`) -) ENGINE=MyISAM AUTO_INCREMENT=207 DEFAULT CHARSET=latin1 ROW_FORMAT=DYNAMIC; +) ENGINE=MyISAM AUTO_INCREMENT=209 DEFAULT CHARSET=latin1 ROW_FORMAT=DYNAMIC; CREATE TABLE `meta_coord` ( `table_name` varchar(40) COLLATE latin1_bin NOT NULL DEFAULT '', diff --git a/modules/t/test-genome-DBs/multi/compara/meta.txt b/modules/t/test-genome-DBs/multi/compara/meta.txt index fdd57ec..3649156 100644 --- a/modules/t/test-genome-DBs/multi/compara/meta.txt +++ b/modules/t/test-genome-DBs/multi/compara/meta.txt @@ -1,4 +1,4 @@ -111 \N schema_version 111 +113 \N schema_version 112 2 \N schema_type compara 3 \N patch patch_84_85_a.sql|schema_version 4 \N patch patch_84_85_b.sql|gene_tree_root_attr @@ -86,3 +86,4 @@ 109 \N patch patch_109_110_b.sql|case_insensitive_stable_id_again 110 \N patch patch_109_110_c.sql|ncbi_taxa_name_varchar500 112 \N patch patch_110_111_a.sql|schema_version +114 \N patch patch_111_112_a.sql|schema_version diff --git a/modules/t/test-genome-DBs/multi/compara/table.sql b/modules/t/test-genome-DBs/multi/compara/table.sql index c2e9c82..e85e06e 100644 --- a/modules/t/test-genome-DBs/multi/compara/table.sql +++ b/modules/t/test-genome-DBs/multi/compara/table.sql @@ -437,7 +437,7 @@ CREATE TABLE `meta` ( PRIMARY KEY (`meta_id`), UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`(255)), KEY `species_value_idx` (`species_id`,`meta_value`(255)) -) ENGINE=MyISAM AUTO_INCREMENT=113 DEFAULT CHARSET=latin1 ROW_FORMAT=DYNAMIC; +) ENGINE=MyISAM AUTO_INCREMENT=115 DEFAULT CHARSET=latin1 ROW_FORMAT=DYNAMIC; CREATE TABLE `method_link` ( `method_link_id` int(10) unsigned NOT NULL AUTO_INCREMENT, diff --git a/modules/t/test-genome-DBs/mus_musculus/core/meta.txt b/modules/t/test-genome-DBs/mus_musculus/core/meta.txt index 0fb903f..36d036f 100644 --- a/modules/t/test-genome-DBs/mus_musculus/core/meta.txt +++ b/modules/t/test-genome-DBs/mus_musculus/core/meta.txt @@ -1,5 +1,5 @@ 1 \N schema_type core -2 \N schema_version 111 +2 \N schema_version 112 3 \N patch patch_65_66_a.sql|schema_version 4 \N patch patch_65_66_b.sql|fix_external_db_id 5 \N patch patch_65_66_c.sql|reorder_unmapped_obj_index @@ -208,3 +208,5 @@ 1720 \N patch patch_109_110_b.sql|Add IS_PAR relationship to link X- and Y-PAR genes 1721 \N patch patch_109_110_c.sql|Allow gene id to belong to multiple alt allele groups 1722 \N patch patch_110_111_a.sql|schema_version +1723 \N patch patch_111_112_a.sql|schema_version +1724 \N patch patch_111_112_b.sql|Allow meta_value to be null diff --git a/modules/t/test-genome-DBs/mus_musculus/core/table.sql b/modules/t/test-genome-DBs/mus_musculus/core/table.sql index 82d61cf..26539c3 100644 --- a/modules/t/test-genome-DBs/mus_musculus/core/table.sql +++ b/modules/t/test-genome-DBs/mus_musculus/core/table.sql @@ -486,11 +486,11 @@ CREATE TABLE `meta` ( `meta_id` int(11) NOT NULL AUTO_INCREMENT, `species_id` int(10) unsigned DEFAULT '1', `meta_key` varchar(40) NOT NULL, - `meta_value` varchar(255) NOT NULL, + `meta_value` varchar(255) DEFAULT NULL, PRIMARY KEY (`meta_id`), UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`), KEY `species_value_idx` (`species_id`,`meta_value`) -) ENGINE=MyISAM AUTO_INCREMENT=1723 DEFAULT CHARSET=latin1 ROW_FORMAT=DYNAMIC; +) ENGINE=MyISAM AUTO_INCREMENT=1725 DEFAULT CHARSET=latin1 ROW_FORMAT=DYNAMIC; CREATE TABLE `meta_coord` ( `table_name` varchar(40) COLLATE latin1_bin NOT NULL DEFAULT '',