From bf289aae79a6732e7d48f0848cfe951e82ecaa72 Mon Sep 17 00:00:00 2001 From: Laurent Gil Date: Tue, 6 Nov 2018 11:06:53 +0000 Subject: [PATCH] Update VEP requirements in the README file --- README.md | 8 +++++++- 1 file changed, 7 insertions(+), 1 deletion(-) diff --git a/README.md b/README.md index f75b0516c..23bd771bc 100644 --- a/README.md +++ b/README.md @@ -21,7 +21,12 @@ ### Installation and requirements -The VEP package requires Perl (>=5.10 recommended, tested on 5.10, 5.14, 5.18, 5.22) and the [DBI](http://search.cpan.org/~timb/DBI/DBI.pm) package installed. +The VEP package requires: + + * **gcc**, **g++** and **make** + * **Perl** (>=5.10 recommended, tested on 5.10, 5.14, 5.18, 5.22, 5.26) + * Perl libraries [Archive::Zip](https://metacpan.org/pod/Archive::Zip) and [DBI](https://metacpan.org/pod/DBI) + The remaining dependencies can be installed using the included [INSTALL.pl](http://www.ensembl.org/info/docs/tools/vep/script/vep_download.html#installer) script. Basic instructions: ```bash git clone https://github.com/Ensembl/ensembl-vep.git @@ -34,6 +39,7 @@ See [documentation](http://www.ensembl.org/info/docs/tools/vep/script/vep_downlo #### Additional CPAN modules The following modules are optional but most users will benefit from installing them. We recommend using [cpanminus](http://search.cpan.org/~miyagawa/Menlo-1.9003/script/cpanm-menlo) to install. + * [DBD::mysql](http://search.cpan.org/~michielb/DBD-mysql/lib/DBD/mysql.pm) - required for database access (`--database` or `--cache` without `--offline`) * [Set::IntervalTree](http://search.cpan.org/~benbooth/Set-IntervalTree/lib/Set/IntervalTree.pm) - required for Haplosaurus, also confers speed updates to VEP * [JSON](http://search.cpan.org/dist/JSON/) - required for writing JSON output