From b959f2e808cbd1ede8c83e08796e21cc98308683 Mon Sep 17 00:00:00 2001
From: Sarah Hunt <seh@ebi.ac.uk>
Date: Tue, 28 Aug 2018 15:12:08 +0100
Subject: [PATCH] update RefSeq GRCh38 alignments

---
 modules/Bio/EnsEMBL/VEP/Pipeline/DumpVEP/DumpVEP_conf.pm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/modules/Bio/EnsEMBL/VEP/Pipeline/DumpVEP/DumpVEP_conf.pm b/modules/Bio/EnsEMBL/VEP/Pipeline/DumpVEP/DumpVEP_conf.pm
index 5a7b4af12..5c9e9789c 100644
--- a/modules/Bio/EnsEMBL/VEP/Pipeline/DumpVEP/DumpVEP_conf.pm
+++ b/modules/Bio/EnsEMBL/VEP/Pipeline/DumpVEP/DumpVEP_conf.pm
@@ -129,7 +129,7 @@ sub default_options {
             ],
           },
           GRCh38 => {
-            bam => $self->o('data_dir').'/interim_GRCh38.p10_knownrefseq_alignments_2017-01-13.bam',
+            bam => $self->o('data_dir').'/GRCh38.p12_knownrefseq_alignments.bam',
             freq_vcf => [
               {
                 file => $self->o('data_dir').'/1KG.phase3.GRCh38_2018_02_26.vcf.gz',