diff --git a/modules/Bio/EnsEMBL/VEP/AnnotationSource/File/GFF.pm b/modules/Bio/EnsEMBL/VEP/AnnotationSource/File/GFF.pm
index 651c4d118..aa3169a4e 100644
--- a/modules/Bio/EnsEMBL/VEP/AnnotationSource/File/GFF.pm
+++ b/modules/Bio/EnsEMBL/VEP/AnnotationSource/File/GFF.pm
@@ -80,6 +80,7 @@ my %INCLUDE_FEATURE_TYPES = map {$_ => 1} qw(
   miRNA
   miRNA_gene
   mt_gene
+  nc_primary_transcript
   NMD_transcript_variant
   processed_pseudogene
   processed_transcript
diff --git a/modules/Bio/EnsEMBL/VEP/Constants.pm b/modules/Bio/EnsEMBL/VEP/Constants.pm
index 759567f52..15be5f7c8 100644
--- a/modules/Bio/EnsEMBL/VEP/Constants.pm
+++ b/modules/Bio/EnsEMBL/VEP/Constants.pm
@@ -53,7 +53,7 @@ use warnings;
 use base qw(Exporter);
 
 our $VEP_VERSION     = 89;
-our $VEP_SUB_VERSION = 1;
+our $VEP_SUB_VERSION = 2;
 
 our @EXPORT_OK = qw(
   @FLAG_FIELDS