From 90132b580e9c08a40ab00a056ab43bb36147050a Mon Sep 17 00:00:00 2001
From: Nick Langridge <nicklangridge@hotmail.com>
Date: Wed, 16 Aug 2017 17:04:13 +0100
Subject: [PATCH] Make scripts work better with collection core databases Use
 SiteDefs PRODUCTION_NAMES as it contains db names (including collections),
 instead of SpeciesDefs ENSEMBL_DATASETS which contains individual genome
 names. This wy we can process in bulk instead of every individual genome.

---
 utils/google_sitemaps/make_google_sitemap_by_species.pl | 2 +-
 utils/make_gene_autocomplete.pl                         | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/utils/google_sitemaps/make_google_sitemap_by_species.pl b/utils/google_sitemaps/make_google_sitemap_by_species.pl
index ac96386520..8e3943d105 100755
--- a/utils/google_sitemaps/make_google_sitemap_by_species.pl
+++ b/utils/google_sitemaps/make_google_sitemap_by_species.pl
@@ -102,7 +102,7 @@ BEGIN
 my @skip = split /,/, $skip_list;
 
 # create the sitemaps for each dataset
-foreach my $dataset (@ARGV ? @ARGV : @{$sd->multi_hash->{'ENSEMBL_DATASETS'}}) {
+foreach my $dataset (@ARGV ? @ARGV : @$SiteDefs::PRODUCTION_NAMES) {
   next if grep { $_ eq $dataset } @skip;
   
   print "$dataset\n";
diff --git a/utils/make_gene_autocomplete.pl b/utils/make_gene_autocomplete.pl
index 5418a18bd5..556443c00d 100644
--- a/utils/make_gene_autocomplete.pl
+++ b/utils/make_gene_autocomplete.pl
@@ -64,7 +64,7 @@ BEGIN
   }
 }
 
-foreach my $dataset (@ARGV ? @ARGV : @{$sd->multi_hash->{'ENSEMBL_DATASETS'}}) {
+foreach my $dataset (@ARGV ? @ARGV : @$SiteDefs::PRODUCTION_NAMES) {
   warn "$dataset\n";
   
   my $dbs = $sd->get_config($dataset, 'databases');