addressing #490

src/envo/envo-edit.owl

@@ -25789,6 +25789,7 @@ SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01000827> <http://purl.obolibrar
 AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_01000828> "Air which has increased levels of water vapour.")
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_01000828> "humid air"@en)
 SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01000828> <http://purl.obolibrary.org/obo/ENVO_00002005>)
+SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01000828> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000086> <http://purl.obolibrary.org/obo/PATO_0015010>))
 SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01000828> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/envo#has_increased_levels_of> <http://purl.obolibrary.org/obo/ENVO_01000266>))
 
 # Class: <http://purl.obolibrary.org/obo/ENVO_01000829> (water vapour saturated air)

src/envo/imports/bfo_seed.owl

@@ -16,4 +16,5 @@ Ontology: <http://purl.obolibrary.org/obo/envo/imports/bfo_seed.owl>
 Class: <http://purl.obolibrary.org/obo/BFO_0000024> # fiat object part
 Class: <http://purl.obolibrary.org/obo/BFO_0000140> # continuant fiat boundary
 Class: <http://purl.obolibrary.org/obo/BFO_0000146> # two-dimensional continuant fiat boundary
-Class: <http://purl.obolibrary.org/obo/BFO_0000142> # one-dimensional continuant fiat boundary
+Class: <http://purl.obolibrary.org/obo/BFO_0000142> # one-dimensional continuant fiat boundary
+Class: <http://purl.obolibrary.org/obo/BFO_0000006> # spatial region

src/envo/imports/pato_import.owl

@@ -2227,6 +2227,35 @@
     
 
 
+    <!-- http://purl.obolibrary.org/obo/PATO_0015009 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0015009">
+        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">humidity</rdfs:label>
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0001547"/>
+    </owl:Class>
+    
+
+
+    <!-- http://purl.obolibrary.org/obo/PATO_0015010 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0015010">
+        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">increased humidity</rdfs:label>
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0002305"/>
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0015009"/>
+    </owl:Class>
+    
+
+
+    <!-- http://purl.obolibrary.org/obo/PATO_0015011 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0015011">
+        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">decreased humidity</rdfs:label>
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0002303"/>
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0015009"/>
+    </owl:Class>
+    
+
+
     <!-- http://purl.obolibrary.org/obo/PATO_0015021 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0015021">

src/envo/imports/pato_seed.owl

@@ -15,7 +15,9 @@ AnnotationProperty: rdfs:label
 
     
 Datatype: xsd:string
-# Class: <>   #
+Class: <http://purl.obolibrary.org/obo/PATO_0015009>   # humidity
+Class: <http://purl.obolibrary.org/obo/PATO_0015010>   # increased humidity
+Class: <http://purl.obolibrary.org/obo/PATO_0015011>   # decreased humidity
 Class: <http://purl.obolibrary.org/obo/PATO_0000690>   # intermittent
 Class: <http://purl.obolibrary.org/obo/PATO_0000318>   # blue
 Class: <http://purl.obolibrary.org/obo/PATO_0001855>   # horizontal

src/envo/modules/catalog-v001.xml

@@ -0,0 +1,8 @@
+<?xml version="1.0" encoding="UTF-8" standalone="no"?>
+<catalog prefer="public" xmlns="urn:oasis:names:tc:entity:xmlns:xml:catalog">
+    <group id="Folder Repository, directory=, recursive=true, Auto-Update=true, version=2" prefer="public" xml:base="">
+        <uri id="Automatically generated entry, Timestamp=1462819804081" name="http://purl.obolibrary.org/obo/envo/modules/entity_attribute.owl" uri="entity_attribute.owl"/>
+        <uri id="Automatically generated entry, Timestamp=1462819804081" name="http://purl.obolibrary.org/obo/envo/modules/entity_attribute_location.owl" uri="entity_attribute_location.owl"/>
+        <uri id="Automatically generated entry, Timestamp=1462819804081" name="http://purl.obolibrary.org/obo/envo/modules/entity_quality_location.owl" uri="entity_quality_location.owl"/>
+    </group>
+</catalog>

src/envo/modules/entity_attribute.csv

@@ -10,3 +10,4 @@ ENVO:09200011,,PATO:0001025,pressure,ENVO:00002005,air
 ENVO:09200012,,PATO:0000146,temperature,ENVO:00001998,soil
 ENVO:09200013,,PATO:0001822,wetness,ENVO:00001998,soil
 ENVO:09200014,,PATO:0000146,temperature,ENVO:00002006,water
+ENVO:09200015,,PATO:0015009,humidity,ENVO:00001998,soil

src/envo/modules/entity_attribute.obo

@@ -0,0 +1,99 @@
+format-version: 1.2
+ontology: envo/modules/entity_attribute
+
+[Term]
+id: ENVO:09200000
+name: temperature of environmental material
+def: "The temperature of some environmental material." []
+synonym: "environmental material temperature" EXACT []
+intersection_of: PATO:0000146
+intersection_of: RO:0000052 ENVO:00010483
+
+[Term]
+id: ENVO:09200001
+name: temperature of air
+def: "The temperature of some air." []
+synonym: "air temperature" EXACT []
+intersection_of: PATO:0000146
+intersection_of: RO:0000052 ENVO:00002005
+
+[Term]
+id: ENVO:09200004
+name: porosity of soil
+def: "The porosity of some soil." []
+synonym: "soil porosity" EXACT []
+intersection_of: PATO:0000973
+intersection_of: RO:0000052 ENVO:00001998
+
+[Term]
+id: ENVO:09200005
+name: mass density of soil
+def: "The mass density of some soil." []
+synonym: "soil mass density" EXACT []
+intersection_of: PATO:0001019
+intersection_of: RO:0000052 ENVO:00001998
+
+[Term]
+id: ENVO:09200008
+name: composition of soil
+def: "The composition of some soil." []
+synonym: "soil composition" EXACT []
+intersection_of: PATO:0000025
+intersection_of: RO:0000052 ENVO:00001998
+
+[Term]
+id: ENVO:09200009
+name: structure of soil
+def: "The structure of some soil." []
+synonym: "soil structure" EXACT []
+intersection_of: PATO:0000141
+intersection_of: RO:0000052 ENVO:00001998
+
+[Term]
+id: ENVO:09200010
+name: acidity of soil
+def: "The acidity of some soil." []
+synonym: "soil acidity" EXACT []
+intersection_of: PATO:0001842
+intersection_of: RO:0000052 ENVO:00001998
+
+[Term]
+id: ENVO:09200011
+name: pressure of air
+def: "The pressure of some air." []
+synonym: "air pressure" EXACT []
+intersection_of: PATO:0001025
+intersection_of: RO:0000052 ENVO:00002005
+
+[Term]
+id: ENVO:09200012
+name: temperature of soil
+def: "The temperature of some soil." []
+synonym: "soil temperature" EXACT []
+intersection_of: PATO:0000146
+intersection_of: RO:0000052 ENVO:00001998
+
+[Term]
+id: ENVO:09200013
+name: wetness of soil
+def: "The wetness of some soil." []
+synonym: "soil wetness" EXACT []
+intersection_of: PATO:0001822
+intersection_of: RO:0000052 ENVO:00001998
+
+[Term]
+id: ENVO:09200014
+name: temperature of water
+def: "The temperature of some water." []
+synonym: "water temperature" EXACT []
+intersection_of: PATO:0000146
+intersection_of: RO:0000052 ENVO:00002006
+
+[Term]
+id: ENVO:09200015
+name: humidity of soil
+def: "The humidity of some soil." []
+synonym: "soil humidity" EXACT []
+intersection_of: PATO:0015009
+intersection_of: RO:0000052 ENVO:00001998
+

src/envo/modules/entity_attribute.omn

@@ -0,0 +1,127 @@
+Prefix: : <http://purl.obolibrary.org/obo/>
+Prefix: IAO: <http://purl.obolibrary.org/obo/IAO_>
+Prefix: DOSDP: <http://geneontology.org/foo/>
+Prefix: oio: <http://www.geneontology.org/formats/oboInOwl#>
+Prefix: CHEBI: <http://purl.obolibrary.org/obo/CHEBI_>
+Prefix: PATO: <http://purl.obolibrary.org/obo/PATO_>
+Prefix: ENVO: <http://purl.obolibrary.org/obo/ENVO_>
+Prefix: RO: <http://purl.obolibrary.org/obo/RO_>
+
+ ## Auto-generated
+
+Ontology: <http://purl.obolibrary.org/obo/auto>
+AnnotationProperty: IAO:0000115
+AnnotationProperty: envo-p/patterns/entity_attribute/attribute
+AnnotationProperty: envo-p/patterns/entity_attribute/entity
+AnnotationProperty: DOSDP:applies-pattern
+AnnotationProperty: oio:hasExactSynonym
+ObjectProperty: RO:0000052 ## inheres in
+## Auto-generated classes
+
+Class: PATO:0000146 ## temperature
+Class: ENVO:00010483 ## environmental material
+## {"attribute": "PATO:0000146", "entity": "ENVO:00010483"}
+Class: ENVO:09200000
+ Annotations: rdfs:label "temperature of environmental material"
+ Annotations: IAO:0000115 "The temperature of some environmental material."
+ Annotations: oio:hasExactSynonym "environmental material temperature"
+ EquivalentTo: PATO:0000146 and RO:0000052 some ENVO:00010483 ## temperature and 'inheres in' some environmental material
+
+Class: PATO:0000146 ## temperature
+Class: ENVO:00002005 ## air
+## {"attribute": "PATO:0000146", "entity": "ENVO:00002005"}
+Class: ENVO:09200001
+ Annotations: rdfs:label "temperature of air"
+ Annotations: IAO:0000115 "The temperature of some air."
+ Annotations: oio:hasExactSynonym "air temperature"
+ EquivalentTo: PATO:0000146 and RO:0000052 some ENVO:00002005 ## temperature and 'inheres in' some air
+
+Class: PATO:0000973 ## porosity
+Class: ENVO:00001998 ## soil
+## {"attribute": "PATO:0000973", "entity": "ENVO:00001998"}
+Class: ENVO:09200004
+ Annotations: rdfs:label "porosity of soil"
+ Annotations: IAO:0000115 "The porosity of some soil."
+ Annotations: oio:hasExactSynonym "soil porosity"
+ EquivalentTo: PATO:0000973 and RO:0000052 some ENVO:00001998 ## porosity and 'inheres in' some soil
+
+Class: PATO:0001019 ## mass density
+Class: ENVO:00001998 ## soil
+## {"attribute": "PATO:0001019", "entity": "ENVO:00001998"}
+Class: ENVO:09200005
+ Annotations: rdfs:label "mass density of soil"
+ Annotations: IAO:0000115 "The mass density of some soil."
+ Annotations: oio:hasExactSynonym "soil mass density"
+ EquivalentTo: PATO:0001019 and RO:0000052 some ENVO:00001998 ## mass density and 'inheres in' some soil
+
+Class: PATO:0000025 ## composition
+Class: ENVO:00001998 ## soil
+## {"attribute": "PATO:0000025", "entity": "ENVO:00001998"}
+Class: ENVO:09200008
+ Annotations: rdfs:label "composition of soil"
+ Annotations: IAO:0000115 "The composition of some soil."
+ Annotations: oio:hasExactSynonym "soil composition"
+ EquivalentTo: PATO:0000025 and RO:0000052 some ENVO:00001998 ## composition and 'inheres in' some soil
+
+Class: PATO:0000141 ## structure
+Class: ENVO:00001998 ## soil
+## {"attribute": "PATO:0000141", "entity": "ENVO:00001998"}
+Class: ENVO:09200009
+ Annotations: rdfs:label "structure of soil"
+ Annotations: IAO:0000115 "The structure of some soil."
+ Annotations: oio:hasExactSynonym "soil structure"
+ EquivalentTo: PATO:0000141 and RO:0000052 some ENVO:00001998 ## structure and 'inheres in' some soil
+
+Class: PATO:0001842 ## acidity
+Class: ENVO:00001998 ## soil
+## {"attribute": "PATO:0001842", "entity": "ENVO:00001998"}
+Class: ENVO:09200010
+ Annotations: rdfs:label "acidity of soil"
+ Annotations: IAO:0000115 "The acidity of some soil."
+ Annotations: oio:hasExactSynonym "soil acidity"
+ EquivalentTo: PATO:0001842 and RO:0000052 some ENVO:00001998 ## acidity and 'inheres in' some soil
+
+Class: PATO:0001025 ## pressure
+Class: ENVO:00002005 ## air
+## {"attribute": "PATO:0001025", "entity": "ENVO:00002005"}
+Class: ENVO:09200011
+ Annotations: rdfs:label "pressure of air"
+ Annotations: IAO:0000115 "The pressure of some air."
+ Annotations: oio:hasExactSynonym "air pressure"
+ EquivalentTo: PATO:0001025 and RO:0000052 some ENVO:00002005 ## pressure and 'inheres in' some air
+
+Class: PATO:0000146 ## temperature
+Class: ENVO:00001998 ## soil
+## {"attribute": "PATO:0000146", "entity": "ENVO:00001998"}
+Class: ENVO:09200012
+ Annotations: rdfs:label "temperature of soil"
+ Annotations: IAO:0000115 "The temperature of some soil."
+ Annotations: oio:hasExactSynonym "soil temperature"
+ EquivalentTo: PATO:0000146 and RO:0000052 some ENVO:00001998 ## temperature and 'inheres in' some soil
+
+Class: PATO:0001822 ## wetness
+Class: ENVO:00001998 ## soil
+## {"attribute": "PATO:0001822", "entity": "ENVO:00001998"}
+Class: ENVO:09200013
+ Annotations: rdfs:label "wetness of soil"
+ Annotations: IAO:0000115 "The wetness of some soil."
+ Annotations: oio:hasExactSynonym "soil wetness"
+ EquivalentTo: PATO:0001822 and RO:0000052 some ENVO:00001998 ## wetness and 'inheres in' some soil
+
+Class: PATO:0000146 ## temperature
+Class: ENVO:00002006 ## water
+## {"attribute": "PATO:0000146", "entity": "ENVO:00002006"}
+Class: ENVO:09200014
+ Annotations: rdfs:label "temperature of water"
+ Annotations: IAO:0000115 "The temperature of some water."
+ Annotations: oio:hasExactSynonym "water temperature"
+ EquivalentTo: PATO:0000146 and RO:0000052 some ENVO:00002006 ## temperature and 'inheres in' some water
+
+Class: PATO:0015009 ## humidity
+Class: ENVO:00001998 ## soil
+## {"attribute": "PATO:0015009", "entity": "ENVO:00001998"}
+Class: ENVO:09200015
+ Annotations: rdfs:label "humidity of soil"
+ Annotations: IAO:0000115 "The humidity of some soil."
+ Annotations: oio:hasExactSynonym "soil humidity"
+ EquivalentTo: PATO:0015009 and RO:0000052 some ENVO:00001998 ## humidity and 'inheres in' some soil

src/envo/modules/entity_attribute.owl

@@ -337,6 +337,27 @@
     
 
 
+    <!-- http://purl.obolibrary.org/obo/ENVO_09200015 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/ENVO_09200015">
+        <rdfs:label>humidity of soil</rdfs:label>
+        <owl:equivalentClass>
+            <owl:Class>
+                <owl:intersectionOf rdf:parseType="Collection">
+                    <rdf:Description rdf:about="http://purl.obolibrary.org/obo/PATO_0015009"/>
+                    <owl:Restriction>
+                        <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000052"/>
+                        <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/ENVO_00001998"/>
+                    </owl:Restriction>
+                </owl:intersectionOf>
+            </owl:Class>
+        </owl:equivalentClass>
+        <oboInOwl:hasExactSynonym>soil humidity</oboInOwl:hasExactSynonym>
+        <obo:IAO_0000115>The humidity of some soil.</obo:IAO_0000115>
+    </owl:Class>
+    
+
+
     <!-- http://purl.obolibrary.org/obo/PATO_0000025 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0000025"/>
@@ -382,6 +403,12 @@
     <!-- http://purl.obolibrary.org/obo/PATO_0001842 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0001842"/>
+    
+
+
+    <!-- http://purl.obolibrary.org/obo/PATO_0015009 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0015009"/>
 </rdf:RDF>