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a pre-release for some urgent requests

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1 parent 6f82b09 commit 05a3e3a8a4629dd15bc444c5332967e76e97f618 @pbuttigieg pbuttigieg committed May 10, 2017
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Showing with 44,710 additions and 45,080 deletions.
  1. +5,300 −4,959 envo.json
  2. +345 −213 envo.obo
  3. +5,464 −5,123 envo.owl
  4. +19 −2 imports/chebi_import.obo
  5. +31 −2 imports/chebi_import.owl
  6. +2 −1 imports/pco_seed.owl
  7. +51 −26 imports/uberon_import.obo
  8. +63 −26 imports/uberon_import.owl
  9. +4,911 −4,733 src/envo/envo-simple.owl
  10. +5,300 −4,959 src/envo/envo.json
  11. +345 −213 src/envo/envo.obo
  12. +5,407 −5,132 src/envo/envo.owl
  13. +19 −2 src/envo/imports/chebi_import.obo
  14. +31 −2 src/envo/imports/chebi_import.owl
  15. +51 −26 src/envo/imports/uberon_import.obo
  16. +63 −26 src/envo/imports/uberon_import.owl
  17. +9 −9 src/envo/subsets/EnvO-Lite-GSC.obo
  18. +1,885 −967 src/envo/subsets/EnvO-Lite-GSC.owl
  19. +40 −40 src/envo/subsets/environmental_hazards.owl
  20. +2,241 −1,997 src/envo/subsets/envo-basic.json
  21. +272 −185 src/envo/subsets/envo-basic.obo
  22. +2,186 −1,942 src/envo/subsets/envo-basic.owl
  23. +987 −845 src/envo/subsets/envoPolar.owl
  24. +52 −52 src/envo/subsets/nlcd2011.owl
  25. +7 −7 src/envo/subsets/ro-eco.owl
  26. +47 −47 src/envo/subsets/wwfBiome-metadata.txt
  27. +16 −16 src/envo/subsets/wwfBiome.owl
  28. +9 −9 subsets/EnvO-Lite-GSC.obo
  29. +9 −9 subsets/EnvO-Lite-GSC.owl
  30. +47 −47 subsets/environmental_hazards-metadata.txt
  31. +35 −35 subsets/environmental_hazards.owl
  32. +2,241 −1,997 subsets/envo-basic.json
  33. +272 −185 subsets/envo-basic.obo
  34. +2,186 −1,942 subsets/envo-basic.owl
  35. +4,700 −9,237 subsets/envoPolar.owl
  36. +50 −50 subsets/nlcd2011.owl
  37. +12 −12 subsets/ro-eco.owl
  38. +5 −5 subsets/wwfBiome.owl
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10,259 envo.json

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558 envo.obo

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10,587 envo.owl

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21 imports/chebi_import.obo
@@ -1,6 +1,6 @@
format-version: 1.2
ontology: envo/imports/chebi_import
-property_value: http://purl.org/dc/elements/1.1/source http://purl.obolibrary.org/obo/chebi/150/chebi.owl
+property_value: http://purl.org/dc/elements/1.1/source http://purl.obolibrary.org/obo/chebi/151/chebi.owl
[Term]
id: CHEBI:131621
@@ -28,6 +28,12 @@ name: volatile organic compound
is_a: CHEBI:72695 ! organic molecule
[Term]
+id: CHEBI:136861
+name: pyrrolopurine
+is_a: CHEBI:26979 ! organic heterotricyclic compound
+is_a: CHEBI:38101 ! organonitrogen heterocyclic compound
+
+[Term]
id: CHEBI:15022
name: electron donor
is_a: CHEBI:17891 ! donor
@@ -2118,10 +2124,11 @@ is_a: CHEBI:35217 ! alkaline earth coordination entity
[Term]
id: CHEBI:34970
name: saxitoxin
+is_a: CHEBI:136861 ! pyrrolopurine
is_a: CHEBI:22315 ! alkaloid
is_a: CHEBI:23003 ! carbamate ester
is_a: CHEBI:24436 ! guanidines
-is_a: CHEBI:26979 ! organic heterotricyclic compound
+is_a: CHEBI:63734 ! ketone hydrate
[Term]
id: CHEBI:35106
@@ -3479,6 +3486,16 @@ name: branched-chain amino-acid anion
is_a: CHEBI:37022 ! amino-acid anion
[Term]
+id: CHEBI:63732
+name: 1,1-diol
+is_a: CHEBI:30879 ! alcohol
+
+[Term]
+id: CHEBI:63734
+name: ketone hydrate
+is_a: CHEBI:63732 ! 1,1-diol
+
+[Term]
id: CHEBI:64047
name: food additive
is_a: CHEBI:33232 ! application
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33 imports/chebi_import.owl
@@ -7,7 +7,7 @@
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:dc="http://purl.org/dc/elements/1.1/">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/envo/imports/chebi_import.owl">
- <dc:source rdf:resource="http://purl.obolibrary.org/obo/chebi/150/chebi.owl"/>
+ <dc:source rdf:resource="http://purl.obolibrary.org/obo/chebi/151/chebi.owl"/>
</owl:Ontology>
@@ -68,6 +68,16 @@
+ <!-- http://purl.obolibrary.org/obo/CHEBI_136861 -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/CHEBI_136861">
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">pyrrolopurine</rdfs:label>
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CHEBI_26979"/>
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CHEBI_38101"/>
+ </owl:Class>
+
+
+
<!-- http://purl.obolibrary.org/obo/CHEBI_15022 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/CHEBI_15022">
@@ -3668,10 +3678,11 @@
<owl:Class rdf:about="http://purl.obolibrary.org/obo/CHEBI_34970">
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">saxitoxin</rdfs:label>
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CHEBI_136861"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CHEBI_22315"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CHEBI_23003"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CHEBI_24436"/>
- <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CHEBI_26979"/>
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CHEBI_63734"/>
</owl:Class>
@@ -6023,6 +6034,24 @@
+ <!-- http://purl.obolibrary.org/obo/CHEBI_63732 -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/CHEBI_63732">
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">1,1-diol</rdfs:label>
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CHEBI_30879"/>
+ </owl:Class>
+
+
+
+ <!-- http://purl.obolibrary.org/obo/CHEBI_63734 -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/CHEBI_63734">
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ketone hydrate</rdfs:label>
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CHEBI_63732"/>
+ </owl:Class>
+
+
+
<!-- http://purl.obolibrary.org/obo/CHEBI_64047 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/CHEBI_64047">
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3 imports/pco_seed.owl
@@ -18,4 +18,5 @@ Datatype: xsd:string
Class: <http://purl.obolibrary.org/obo/PCO_0000002> # ecological community
-Class: <http://purl.obolibrary.org/obo/PCO_0000001> # population
+Class: <http://purl.obolibrary.org/obo/PCO_0000001> # population
+Class: <http://purl.obolibrary.org/obo/PCO_1000004> # microbial community
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