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Addressing #520

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1 parent dd0e414 commit 57b4cd144c5b1f2ed8629e24e46bb70e0028ff30 @pbuttigieg pbuttigieg committed Jul 4, 2017
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1 src/envo/modules/entity_attribute_location.csv
@@ -19,3 +19,4 @@ ENVO:09000017,,PATO:0000033,concentration,CHEBI:25555,nitrogen atom,ENVO:0000199
ENVO:09000018,,PATO:0000033,concentration,CHEBI:25555,nitrogen atom,ENVO:00002006,water
ENVO:09200006,,PATO:0000033,concentration,CHEBI:28938,ammonium,ENVO:00001998,soil
ENVO:09200007,,PATO:0000033,concentration,CHEBI:17632,nitrate,ENVO:00001998,soil
+ENVO:09000019,,PATO:0000033,concentration,CHEBI:17996,chloride,ENVO:00002006,water
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54 src/envo/modules/entity_attribute_location.obo
@@ -39,21 +39,21 @@ synonym: "water carbon atom amount" EXACT []
[Term]
id: ENVO:09000007
-name: concentration of of carbon atom in environmental material
-def: "The concentration of of a carbon atom when measured in environmental material." []
-synonym: "environmental material carbon atom concentration of" EXACT []
+name: concentration of carbon atom in environmental material
+def: "The concentration of a carbon atom when measured in environmental material." []
+synonym: "environmental material carbon atom concentration" EXACT []
[Term]
id: ENVO:09000008
-name: concentration of of carbon atom in soil
-def: "The concentration of of a carbon atom when measured in soil." []
-synonym: "soil carbon atom concentration of" EXACT []
+name: concentration of carbon atom in soil
+def: "The concentration of a carbon atom when measured in soil." []
+synonym: "soil carbon atom concentration" EXACT []
[Term]
id: ENVO:09000009
-name: concentration of of carbon atom in water
-def: "The concentration of of a carbon atom when measured in water." []
-synonym: "water carbon atom concentration of" EXACT []
+name: concentration of carbon atom in water
+def: "The concentration of a carbon atom when measured in water." []
+synonym: "water carbon atom concentration" EXACT []
[Term]
id: ENVO:09000010
@@ -93,31 +93,37 @@ synonym: "water nitrogen atom amount" EXACT []
[Term]
id: ENVO:09000016
-name: concentration of of nitrogen atom in environmental material
-def: "The concentration of of a nitrogen atom when measured in environmental material." []
-synonym: "environmental material nitrogen atom concentration of" EXACT []
+name: concentration of nitrogen atom in environmental material
+def: "The concentration of a nitrogen atom when measured in environmental material." []
+synonym: "environmental material nitrogen atom concentration" EXACT []
[Term]
id: ENVO:09000017
-name: concentration of of nitrogen atom in soil
-def: "The concentration of of a nitrogen atom when measured in soil." []
-synonym: "soil nitrogen atom concentration of" EXACT []
+name: concentration of nitrogen atom in soil
+def: "The concentration of a nitrogen atom when measured in soil." []
+synonym: "soil nitrogen atom concentration" EXACT []
[Term]
id: ENVO:09000018
-name: concentration of of nitrogen atom in water
-def: "The concentration of of a nitrogen atom when measured in water." []
-synonym: "water nitrogen atom concentration of" EXACT []
+name: concentration of nitrogen atom in water
+def: "The concentration of a nitrogen atom when measured in water." []
+synonym: "water nitrogen atom concentration" EXACT []
+
+[Term]
+id: ENVO:09000019
+name: concentration of chloride in water
+def: "The concentration of a chloride when measured in water." []
+synonym: "water chloride concentration" EXACT []
[Term]
id: ENVO:09200006
-name: concentration of of ammonium in soil
-def: "The concentration of of a ammonium when measured in soil." []
-synonym: "soil ammonium concentration of" EXACT []
+name: concentration of ammonium in soil
+def: "The concentration of a ammonium when measured in soil." []
+synonym: "soil ammonium concentration" EXACT []
[Term]
id: ENVO:09200007
-name: concentration of of nitrate in soil
-def: "The concentration of of a nitrate when measured in soil." []
-synonym: "soil nitrate concentration of" EXACT []
+name: concentration of nitrate in soil
+def: "The concentration of a nitrate when measured in soil." []
+synonym: "soil nitrate concentration" EXACT []
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49 src/envo/modules/entity_attribute_location.owl
@@ -61,12 +61,6 @@
- <!-- http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym -->
-
- <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
-
-
-
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
@@ -113,6 +107,12 @@
+ <!-- http://purl.obolibrary.org/obo/CHEBI_17996 -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/CHEBI_17996"/>
+
+
+
<!-- http://purl.obolibrary.org/obo/CHEBI_25555 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/CHEBI_25555"/>
@@ -707,6 +707,37 @@
+ <!-- http://purl.obolibrary.org/obo/ENVO_09000019 -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/ENVO_09000019">
+ <owl:equivalentClass>
+ <owl:Class>
+ <owl:intersectionOf rdf:parseType="Collection">
+ <rdf:Description rdf:about="http://purl.obolibrary.org/obo/PATO_0000033"/>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000052"/>
+ <owl:someValuesFrom>
+ <owl:Class>
+ <owl:intersectionOf rdf:parseType="Collection">
+ <rdf:Description rdf:about="http://purl.obolibrary.org/obo/CHEBI_17996"/>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
+ <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/ENVO_00002006"/>
+ </owl:Restriction>
+ </owl:intersectionOf>
+ </owl:Class>
+ </owl:someValuesFrom>
+ </owl:Restriction>
+ </owl:intersectionOf>
+ </owl:Class>
+ </owl:equivalentClass>
+ <obo:IAO_0000115>The concentration of chloride ions when measured in water.</obo:IAO_0000115>
+ <oboInOwl:hasExactSynonym>water chloride concentration</oboInOwl:hasExactSynonym>
+ <rdfs:label>concentration of chloride in water</rdfs:label>
+ </owl:Class>
+
+
+
<!-- http://purl.obolibrary.org/obo/ENVO_09200006 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ENVO_09200006">
@@ -731,7 +762,7 @@
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
- <obo:IAO_0000115>The concentration of a ammonium when measured in soil.</obo:IAO_0000115>
+ <obo:IAO_0000115>The concentration of ammonium ions when measured in soil.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>soil ammonium concentration</oboInOwl:hasExactSynonym>
<rdfs:label>concentration of ammonium in soil</rdfs:label>
</owl:Class>
@@ -762,7 +793,7 @@
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
- <obo:IAO_0000115>The concentration of a nitrate when measured in soil.</obo:IAO_0000115>
+ <obo:IAO_0000115>The concentration of nitrate ions when measured in soil.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>soil nitrate concentration</oboInOwl:hasExactSynonym>
<rdfs:label>concentration of nitrate in soil</rdfs:label>
</owl:Class>
@@ -788,5 +819,5 @@
-<!-- Generated by the OWL API (version 4.2.6) https://github.com/owlcs/owlapi -->
+<!-- Generated by the OWL API (version 4.2.6.20160910-2108) https://github.com/owlcs/owlapi -->

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