addressing #504

EnvironmentOntology · 876be99e1cd1af594d637c66e7f9f8593dfbf907 · pbuttigieg committed Apr 29, 2017 · Apr 29, 2017 · 876be99
1 parent 35b8dd8
commit 876be99e1cd1af594d637c66e7f9f8593dfbf907
Unified Split

Showing with 25 additions and 14 deletions.

+25 −14 src/envo/envo-edit.owl
diff --git a/src/envo/envo-edit.owl b/src/envo/envo-edit.owl
@@ -2266,6 +2266,7 @@ Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01000946>))
 Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01000947>))
 Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01000948>))
 Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01000949>))
+Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01000950>))
 Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01001303>))
 Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01001304>))
 Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01001305>))
@@ -26885,6 +26886,15 @@ AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#has
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_01000949> "lichen woodland"@en)
 SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01000949> <http://purl.obolibrary.org/obo/ENVO_01000240>)
 
+# Class: <http://purl.obolibrary.org/obo/ENVO_01000950> (water ice formation process)
+
+AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "http://www.waterencyclopedia.com/Re-St/Sea-Water-Freezing-of.html") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_01000950> "A material transformation process during which water ice is formed.")
+AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000117> <http://purl.obolibrary.org/obo/ENVO_01000950> "http://orcid.org/0000-0002-3410-4655")
+AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000117> <http://purl.obolibrary.org/obo/ENVO_01000950> "http://orcid.org/0000-0002-4366-3088")
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/ENVO_01000950> "envoPolar")
+AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_01000950> "water ice formation process"@en)
+SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01000950> <http://purl.obolibrary.org/obo/ENVO_03000043>)
+
 # Class: <http://purl.obolibrary.org/obo/ENVO_01001303> (environmental role)
 
 AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_01001303> "A role which is may be realised by an environmental system")
@@ -28746,7 +28756,8 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <htt
 AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/ENVO_03000043> "Experimental class for structural purposes not recommended for annotation. A material transformation process only refers to ENVO:environmental material classes (e.g. bulk and typically impure substances), rather than transformations converting a specific chemical into another.")
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_03000043> "material transformation process"@en)
 SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03000043> <http://purl.obolibrary.org/obo/ENVO_02500000>)
-SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03000043> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002229> <http://purl.obolibrary.org/obo/ENVO_03000010>))
+SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03000043> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002233> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/ENVO_00002006> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000086> ObjectUnionOf(<http://purl.obolibrary.org/obo/PATO_0001547> <http://purl.obolibrary.org/obo/PATO_0001548>)))))
+SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03000043> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002234> <http://purl.obolibrary.org/obo/ENVO_01000277>))
 
 # Class: <http://purl.obolibrary.org/obo/ENVO_03000044> (sea ice formation process)
 
@@ -28755,7 +28766,7 @@ AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000117> <http://purl.ob
 AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000117> <http://purl.obolibrary.org/obo/ENVO_03000044> "http://orcid.org/0000-0002-4366-3088")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/ENVO_03000044> "envoPolar")
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_03000044> "sea ice formation process"@en)
-SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03000044> <http://purl.obolibrary.org/obo/ENVO_03000043>)
+SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03000044> <http://purl.obolibrary.org/obo/ENVO_01000950>)
 SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03000044> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002233> <http://purl.obolibrary.org/obo/ENVO_00002149>))
 SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03000044> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002234> <http://purl.obolibrary.org/obo/ENVO_00002200>))
 
@@ -28768,6 +28779,7 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <htt
 AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/ENVO_03000045> "Expelled salt accumulates in brine droplets, which remain in a liquid state due to their increased salinity.")
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_03000045> "brine rejection from seawater"@en)
 SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03000045> <http://purl.obolibrary.org/obo/ENVO_03000043>)
+SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03000045> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/ENVO_03000044>))
 SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03000045> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002233> <http://purl.obolibrary.org/obo/ENVO_00002149>))
 SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03000045> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002234> <http://purl.obolibrary.org/obo/ENVO_00003044>))
 
@@ -28859,14 +28871,14 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <htt
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_03000054> "depositional process"@en)
 SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03000054> <http://purl.obolibrary.org/obo/ENVO_02500000>)
 
-# Class: <http://purl.obolibrary.org/obo/ENVO_03000055> (ice formation process)
+# Class: <http://purl.obolibrary.org/obo/ENVO_03000055> (desublimation of water vapour into ice)
 
 AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_03000055> "A depositional process during which water vapour is frozen into water ice.")
 AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000117> <http://purl.obolibrary.org/obo/ENVO_03000055> "http://orcid.org/0000-0002-3410-4655")
 AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000117> <http://purl.obolibrary.org/obo/ENVO_03000055> "http://orcid.org/0000-0002-4366-3088")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/ENVO_03000055> "envoPolar")
-AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_03000055> "ice formation process"@en)
-SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03000055> <http://purl.obolibrary.org/obo/ENVO_03000054>)
+AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_03000055> "desublimation of water vapour into ice"@en)
+SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03000055> <http://purl.obolibrary.org/obo/ENVO_01000726>)
 SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03000055> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002233> <http://purl.obolibrary.org/obo/ENVO_00002006>))
 
 # Class: <http://purl.obolibrary.org/obo/ENVO_03000056> (new ice formation process)
@@ -28877,7 +28889,7 @@ AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000117> <http://purl.ob
 AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000117> <http://purl.obolibrary.org/obo/ENVO_03000056> "http://orcid.org/0000-0002-4366-3088")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/ENVO_03000056> "envoPolar")
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_03000056> "new ice formation process"@en)
-SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03000056> <http://purl.obolibrary.org/obo/ENVO_03000055>)
+SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03000056> <http://purl.obolibrary.org/obo/ENVO_01000950>)
 SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03000056> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002233> <http://purl.obolibrary.org/obo/ENVO_00002006>))
 SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03000056> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002234> ObjectUnionOf(<http://purl.obolibrary.org/obo/ENVO_03000046> <http://purl.obolibrary.org/obo/ENVO_03000075> <http://purl.obolibrary.org/obo/ENVO_03000076>)))
 
@@ -28886,11 +28898,10 @@ SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03000056> ObjectSomeValuesFrom(<
 AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "https://en.wikipedia.org/wiki/Sea_ice#Formation") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_03000057> "An ice formation process during which seawater is frozen into a sea ice.")
 AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000117> <http://purl.obolibrary.org/obo/ENVO_03000057> "http://orcid.org/0000-0002-3410-4655")
 AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000117> <http://purl.obolibrary.org/obo/ENVO_03000057> "http://orcid.org/0000-0002-4366-3088")
+AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0100001> <http://purl.obolibrary.org/obo/ENVO_03000057> <http://purl.obolibrary.org/obo/ENVO_03000044>)
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/ENVO_03000057> "envoPolar")
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_03000057> "sea ice formation process"@en)
-SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03000057> <http://purl.obolibrary.org/obo/ENVO_03000055>)
-SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03000057> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002233> <http://purl.obolibrary.org/obo/ENVO_00002149>))
-SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03000057> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002234> <http://purl.obolibrary.org/obo/ENVO_00002200>))
+AnnotationAssertion(owl:deprecated <http://purl.obolibrary.org/obo/ENVO_03000057> "true"^^xsd:boolean)
 
 # Class: <http://purl.obolibrary.org/obo/ENVO_03000058> (nilas formation process)
 
@@ -28899,7 +28910,7 @@ AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000117> <http://purl.ob
 AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000117> <http://purl.obolibrary.org/obo/ENVO_03000058> "http://orcid.org/0000-0002-4366-3088")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/ENVO_03000058> "envoPolar")
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_03000058> "nilas formation process"@en)
-SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03000058> <http://purl.obolibrary.org/obo/ENVO_03000057>)
+SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03000058> <http://purl.obolibrary.org/obo/ENVO_03000044>)
 SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03000058> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002233> <http://purl.obolibrary.org/obo/ENVO_03000063>))
 SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03000058> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002234> <http://purl.obolibrary.org/obo/ENVO_03000068>))
 
@@ -28910,7 +28921,7 @@ AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000117> <http://purl.ob
 AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000117> <http://purl.obolibrary.org/obo/ENVO_03000059> "http://orcid.org/0000-0002-4366-3088")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/ENVO_03000059> "envoPolar")
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_03000059> "young ice formation process"@en)
-SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03000059> <http://purl.obolibrary.org/obo/ENVO_03000057>)
+SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03000059> <http://purl.obolibrary.org/obo/ENVO_03000044>)
 SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03000059> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002233> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/ENVO_00002149> <http://purl.obolibrary.org/obo/ENVO_03000068>)))
 SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03000059> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002234> <http://purl.obolibrary.org/obo/ENVO_03000069>))
 
@@ -28922,7 +28933,7 @@ AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000117> <http://purl.ob
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/ENVO_03000060> "envoPolar")
 AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/ENVO_03000060> "First year ice that survives melting during spring and summer can transition to second year ice.")
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_03000060> "first year ice formation process"@en)
-SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03000060> <http://purl.obolibrary.org/obo/ENVO_03000057>)
+SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03000060> <http://purl.obolibrary.org/obo/ENVO_03000044>)
 SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03000060> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002233> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/ENVO_00002149> <http://purl.obolibrary.org/obo/ENVO_03000069>)))
 SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03000060> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002234> <http://purl.obolibrary.org/obo/ENVO_03000071>))
 
@@ -28934,7 +28945,7 @@ AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000117> <http://purl.ob
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/ENVO_03000061> "envoPolar")
 AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/ENVO_03000061> "Second year ice forms from first year ice which has previously survived one melt season.")
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_03000061> "second year ice formation"@en)
-SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03000061> <http://purl.obolibrary.org/obo/ENVO_03000057>)
+SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03000061> <http://purl.obolibrary.org/obo/ENVO_03000044>)
 SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03000061> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002233> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/ENVO_00002149> <http://purl.obolibrary.org/obo/ENVO_03000071>)))
 SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03000061> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002234> <http://purl.obolibrary.org/obo/ENVO_03000072>))
 
@@ -28946,7 +28957,7 @@ AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000117> <http://purl.ob
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/ENVO_03000062> "envoPolar")
 AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/ENVO_03000062> "Multiyear ice forms from second year ice which has previously survived at least two melt seasons.")
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_03000062> "multiyear ice formation process"@en)
-SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03000062> <http://purl.obolibrary.org/obo/ENVO_03000057>)
+SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03000062> <http://purl.obolibrary.org/obo/ENVO_03000044>)
 SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03000062> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002233> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/ENVO_00002149> <http://purl.obolibrary.org/obo/ENVO_03000072>)))
 SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03000062> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002234> <http://purl.obolibrary.org/obo/ENVO_03000073>))