addressing #523

actual fix for #233
Merge pull request #524 from EnvironmentOntology/bfo-import
Fix bug whereby ro was used for bfo mirror
EnvironmentOntology · pbuttigieg · cmungall · cmungall · pbuttigieg · pbuttigieg
diff --git a/envo.json b/envo.json
diff --git a/envo.obo b/envo.obo
diff --git a/envo.owl b/envo.owl
diff --git a/imports/bfo_import.owl b/imports/bfo_import.owl
diff --git a/imports/clo_import.owl b/imports/clo_import.owl
@@ -0,0 +1,126 @@
+<?xml version="1.0"?>
+<rdf:RDF xmlns="http://purl.obolibrary.org/obo/envo/imports/clo_import.owl#"
+     xml:base="http://purl.obolibrary.org/obo/envo/imports/clo_import.owl"
+     xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
+     xmlns:owl="http://www.w3.org/2002/07/owl#"
+     xmlns:xml="http://www.w3.org/XML/1998/namespace"
+     xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
+     xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
+     xmlns:obo="http://purl.obolibrary.org/obo/">
+    <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/envo/imports/clo_import.owl"/>
+    
+
+
+    <!-- 
+    ///////////////////////////////////////////////////////////////////////////////////////
+    //
+    // Annotation properties
+    //
+    ///////////////////////////////////////////////////////////////////////////////////////
+     -->
+
+    
+
+
+    <!-- http://purl.obolibrary.org/obo/IAO_0000115 -->
+
+    <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000115"/>
+    
+
+
+    <!-- 
+    ///////////////////////////////////////////////////////////////////////////////////////
+    //
+    // Classes
+    //
+    ///////////////////////////////////////////////////////////////////////////////////////
+     -->
+
+    
+
+
+    <!-- http://purl.obolibrary.org/obo/BFO_0000001 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000001">
+        <rdfs:label xml:lang="en">entity</rdfs:label>
+    </owl:Class>
+    
+
+
+    <!-- http://purl.obolibrary.org/obo/BFO_0000002 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000002">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000001"/>
+        <obo:IAO_0000115 xml:lang="en">An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts.</obo:IAO_0000115>
+        <rdfs:label xml:lang="en">continuant</rdfs:label>
+    </owl:Class>
+    
+
+
+    <!-- http://purl.obolibrary.org/obo/BFO_0000004 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000004">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000002"/>
+        <obo:IAO_0000115 xml:lang="en">A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything.</obo:IAO_0000115>
+        <obo:IAO_0000115 xml:lang="en">b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])</obo:IAO_0000115>
+        <rdfs:label xml:lang="en">independent continuant</rdfs:label>
+    </owl:Class>
+    
+
+
+    <!-- http://purl.obolibrary.org/obo/BFO_0000040 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000040">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000004"/>
+        <obo:IAO_0000115 xml:lang="en">An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time.</obo:IAO_0000115>
+        <rdfs:label xml:lang="en">material entity</rdfs:label>
+    </owl:Class>
+    
+
+
+    <!-- http://purl.obolibrary.org/obo/CLO_0000031 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/CLO_0000031">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001905"/>
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0100060"/>
+        <obo:IAO_0000115 xml:lang="en">A cultured cell population that represents a genetically stable and homogenous population of cultured cells that shares a common propagation history (i.e. has been successively passaged together in culture). </obo:IAO_0000115>
+        <obo:IAO_0000115>A cultured cell population that represents a genetically stable and homogenous population of cultured cells that shares a common propagation history (i.e. has been successively passaged together in culture).  
+</obo:IAO_0000115>
+        <rdfs:label xml:lang="en">cell line</rdfs:label>
+    </owl:Class>
+    
+
+
+    <!-- http://purl.obolibrary.org/obo/OBI_0000047 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000047">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
+        <obo:IAO_0000115 xml:lang="en">Is a material entity that is created or changed during material processing.</obo:IAO_0000115>
+        <rdfs:label xml:lang="en">processed material</rdfs:label>
+    </owl:Class>
+    
+
+
+    <!-- http://purl.obolibrary.org/obo/OBI_0001905 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0001905">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0100060"/>
+        <obo:IAO_0000115>A cultured cell population that is derived through one or more passages in culture.</obo:IAO_0000115>
+        <rdfs:label>secondary cultured cell population</rdfs:label>
+    </owl:Class>
+    
+
+
+    <!-- http://purl.obolibrary.org/obo/OBI_0100060 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0100060">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000047"/>
+        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A processed material comprised of a collection of cultured cells that has been continuously maintained together in culture and shares a common propagation history.</obo:IAO_0000115>
+        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">cultured cell population</rdfs:label>
+    </owl:Class>
+</rdf:RDF>
+
+
+
+<!-- Generated by the OWL API (version 0.0.1+91bea50) https://github.com/owlcs/owlapi -->
+
diff --git a/imports/fao_import.owl b/imports/fao_import.owl
@@ -0,0 +1,53 @@
+<?xml version="1.0"?>
+<rdf:RDF xmlns="http://purl.obolibrary.org/obo/envo/imports/fao_import.owl#"
+     xml:base="http://purl.obolibrary.org/obo/envo/imports/fao_import.owl"
+     xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
+     xmlns:owl="http://www.w3.org/2002/07/owl#"
+     xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
+     xmlns:xml="http://www.w3.org/XML/1998/namespace"
+     xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
+     xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#">
+    <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/envo/imports/fao_import.owl"/>
+    
+
+
+    <!-- 
+    ///////////////////////////////////////////////////////////////////////////////////////
+    //
+    // Annotation properties
+    //
+    ///////////////////////////////////////////////////////////////////////////////////////
+     -->
+
+    
+
+
+    <!-- http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym -->
+
+    <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
+    
+
+
+    <!-- 
+    ///////////////////////////////////////////////////////////////////////////////////////
+    //
+    // Classes
+    //
+    ///////////////////////////////////////////////////////////////////////////////////////
+     -->
+
+    
+
+
+    <!-- http://purl.obolibrary.org/obo/FAO_0000001 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/FAO_0000001">
+        <oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">fungal structure ontology</oboInOwl:hasRelatedSynonym>
+        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">fungal structure</rdfs:label>
+    </owl:Class>
+</rdf:RDF>
+
+
+
+<!-- Generated by the OWL API (version 0.0.1+91bea50) https://github.com/owlcs/owlapi -->
+