missing relationships

[cmungall]

The following links were inferred by the OBO-Edit reasoner using envo_xp. They can also be visualized in OE2. Where indicated, we should either add the is_a link or fix the xp definition.

See http://www.obofoundry.org/cgi-bin/detail.cgi?id=envo\_xp

Eventually we should move to incorporating envo_xp in envo, and inferring the polyhierarchy automatically

[Term]
id: ENVO:00000041
name: tidal creek
namespace: ENVO
def: “A tidal water channel. Creeks may often dry to a muddy channel with little or no flow at low tide, but often with significant depth of water at high tide.” [Wikipedia:Tidal_creek]
synonym: “stream” BROAD [ADL:FTT]
synonym: “tidal creek” EXACT [Geonames:feature]
xref: FTT:105
xref: FTT:1223
xref: Geonames:CRKT
xref: Wikipedia:Tidal_creek
is_a: ENVO:00000230 ! coastal wetland
is_a: ENVO:00000412 ! tidal watercourse
is_a: ENVO:02000049 ! * IMPLIED LINK AUTOMATICALLY REALIZED * ! coastal water body

[Term]
id: ENVO:00000045
name: estuary
namespace: ENVO
def: “A semi-enclosed coastal body of water with one or more rivers or streams flowing into it, and with a free connection to the open sea.” [Wikipedia:Estuary]
synonym: “Estuary” EXACT [NASA:earthrealm]
synonym: “estuary” EXACT [Geonames:feature]
synonym: “inlet” RELATED [USGS:SDTS]
synonym: “mouth” BROAD [USGS:SDTS]
xref: FTT:234
xref: Geonames:ESTY
xref: TGN:21152
xref: Wikipedia:Estuary
is_a: ENVO:00000230 ! coastal wetland
is_a: ENVO:00000386 ! river mouth
is_a: ENVO:02000049 ! * IMPLIED LINK AUTOMATICALLY REALIZED * ! coastal water body

[Term]
id: ENVO:00000531
name: ice cap depression
namespace: ENVO
synonym: “icecap depression” RELATED [Geonames:feature]
synonym: “icecap depression” EXACT [ADL:FTT]
xref: FTT:839
xref: Geonames:DPRG
xref: TGN:21145
is_a: ENVO:00000309 ! * IMPLIED LINK AUTOMATICALLY REALIZED * ! depression
intersection_of: ENVO:00000309 ! depression
intersection_of: located_in ENVO:00000145 ! ice cap
relationship: part_of ENVO:00000145 ! ice cap

[Term]
id: ENVO:00002134
name: anaerobic stream sediment
namespace: ENVO
is_a: ENVO:00002045 ! * IMPLIED LINK AUTOMATICALLY REALIZED * ! anaerobic sediment
is_a: ENVO:00002127 ! stream sediment
intersection_of: ENVO:00002127 ! stream sediment
intersection_of: OBO_REL:has_quality PATO:0001456 ! anaerobic

[Term]
id: ENVO:02000045
name: red clay
namespace: ENVO
is_a: ENVO:00002113 ! marine sediment
is_a: ENVO:00002982 ! * IMPLIED LINK AUTOMATICALLY REALIZED * ! clay
intersection_of: ENVO:00002982 ! clay
intersection_of: OBO_REL:has_quality PATO:0000322 ! red

Original comment by: cmungall