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generalise "cavity" #447
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pbuttigieg
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The uberon class itself must of course retain its anatomical context; we
could make a very general cavity at the BFO level. Or we could just
analogize directly into ENVO
FWIW I'm not sure the distinction between "cavity" and "anatomical
space" is so useful. I would just go with a general "environmental
space" or similar and concentrate on axiomatizing the particular classes
in terms of how bounded they are etc, rather than worrying about
asserting into a quite abstract definition.
By analogize, something like:
`def:` __Anatomical space which contains portions of one or more body
substances and is bounded by the internal surface of one maximally
connected anatomical structure. Examples: cranial cavity, pharyngeal
recess space, nasal cavity, tooth socket, cavity of serous sac, lumen of
stomach, lumen of artery, fornix of vagina.__ `[FMA:67552]`
==>
_Environmental_ space which contains portions of one or more
_environmental_ substances (air, water, etc) and is bounded by the
internal surface of one maximally connected _environmental_ structure
But this is IMHO weird. How do we evaluate maximally connected for
environments? With bodies we have distinct tissue layers. For something
like a cave, is it really bounded by 1 maximally connected structure?
in some cases it may be composed of different strata etc
This is why I'd go with the more straightforward 'space', or maybe
'(partially) eclosed space'
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pbuttigieg commentedDec 5, 2016
@cmungall UBERON has a useful cavity class which could help ENVO work with caves (#5) , ballast tanks (#445), and the like. Could this be generalised beyond anatomy in ENVO or another target?