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b/images/tutorials/materials/interfaces/twisted-bilayer-molybdenum-disulfide/mos2-result-wavejs-60.png @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b3ba5f9337702844ae8f4e06bfba50136ef4bb781cce23be387535a06d672725 +size 60137 diff --git a/images/tutorials/materials/interfaces/twisted-bilayer-molybdenum-disulfide/standata-import-mos2.png b/images/tutorials/materials/interfaces/twisted-bilayer-molybdenum-disulfide/standata-import-mos2.png new file mode 100644 index 000000000..17586ef01 --- /dev/null +++ b/images/tutorials/materials/interfaces/twisted-bilayer-molybdenum-disulfide/standata-import-mos2.png @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ef183768ccdfdee53301c2e6538adb945d42280dcd5e9a7d6cbfc5d83f76fa27 +size 79851 diff --git a/lang/en/docs/tutorials/materials/specific/defect-creation-point-substitution-graphene.md b/lang/en/docs/tutorials/materials/specific/defect-point-substitution-graphene.md similarity index 89% rename from lang/en/docs/tutorials/materials/specific/defect-creation-point-substitution-graphene.md rename to lang/en/docs/tutorials/materials/specific/defect-point-substitution-graphene.md index 6ecf041cc..006a99369 100644 --- a/lang/en/docs/tutorials/materials/specific/defect-creation-point-substitution-graphene.md +++ b/lang/en/docs/tutorials/materials/specific/defect-point-substitution-graphene.md @@ -11,7 +11,7 @@ This tutorial demonstrates the process of creating materials with substitution d [//]: # () -!!!note "Reference" +!!!note "Manuscript" Yoshitaka Fujimoto and Susumu Saito, "Formation, stabilities, and electronic properties of nitrogen defects in graphene", Physical Review B, 2011. [DOI: 10.1103/PhysRevB.84.245446](https://journals.aps.org/prb/abstract/10.1103/PhysRevB.84.245446){:target='_blank'}. We use the [Materials Designer](../../../materials-designer/overview.md) to create a supercell of graphene, identify the crystal site positions for defects, and introduce nitrogen atoms and vacancies accordingly. @@ -20,7 +20,7 @@ We will focus on creating graphene-nitrogen structures from FIG. 1. Specifically, the material from FIG. 1. b) of the paper: -![Point Defect, Substitution, 0](/images/tutorials/materials/defects/defect_creation_point_substitution_graphene/0-figure-from-manuscript.webp "Point Defect, Substitution, FIG. 1. b)") +![Point Defect, Substitution, 0](/images/tutorials/materials/defects/defect_creation_point_substitution_graphene/0-figure-from-manuscript.webp "Point Defect, Substitution, FIG. 1.") ## 1. Create Graphene Supercell @@ -101,19 +101,19 @@ Here's the visual of the updated content: ![Notebook setup](/images/tutorials/materials/defects/defect_creation_point_substitution_graphene/5-jl-setup.webp "Notebook setup") -## 5. Run the Notebook +## 4. Run the Notebook Run the notebook by clicking `Run` > `Run All` in the top menu to run cells and wait for the results to appear. ![Run All](/images/jupyterlite/run-all.webp "Run All") -## 6. Analyze the Results +## 5. Analyze the Results After running the notebook, the user will be able to visualize the structure of Graphene with substitution defects. ![Review the Results](/images/tutorials/materials/defects/defect_creation_point_substitution_graphene/6-jl-result-preview.webp "Review the Results") -## 7. Pass the Material to Materials Designer +## 6. Pass the Material to Materials Designer The user can pass the material with substitution defects in the current Materials Designer environment and save it. @@ -126,21 +126,9 @@ Or the user can [save or download](../../../materials-designer/header-menu/input The following JupyterLite notebook demonstrates the process of creating materials with substitution defects in graphene. Select "Run" > "Run All Cells". -{% with origin_url=config.extra.jupyterlite.origin_url %} -{% with notebooks_path_root=config.extra.jupyterlite.notebooks_path_root %} -{% with notebook_name='specific_examples/defect_creation_point_substitution_graphene.ipynb' %} +{% with origin_url="https://jupyterlite.mat3ra.com/retro/notebooks/?path=api-examples/other/materials_designer/specific_examples/defect_point_substitution_graphene.ipynb" %} {% include 'jupyterlite_embed.html' %} {% endwith %} -{% endwith %} -{% endwith %} - - ## Tags diff --git a/lang/en/docs/tutorials/materials/specific/defect-creation-surface-island-titanium-nitride.md b/lang/en/docs/tutorials/materials/specific/defect-surface-island-titanium-nitride.md similarity index 97% rename from lang/en/docs/tutorials/materials/specific/defect-creation-surface-island-titanium-nitride.md rename to lang/en/docs/tutorials/materials/specific/defect-surface-island-titanium-nitride.md index 936dc1693..da2c256ed 100644 --- a/lang/en/docs/tutorials/materials/specific/defect-creation-surface-island-titanium-nitride.md +++ b/lang/en/docs/tutorials/materials/specific/defect-surface-island-titanium-nitride.md @@ -11,7 +11,7 @@ This tutorial demonstrates the process of creating material with island on the s [//]: # () -!!!note "Reference" +!!!note "Manuscript" **D. G. Sangiovanni, A. B. Mei, D. Edström, L. Hultman, V. Chirita, I. Petrov, and J. E. Greene**, "Effects of surface vibrations on interlayer mass transport: Ab initio molecular dynamics investigation of Ti adatom descent pathways and rates from TiN/TiN(001) islands", Physical Review B, 2018. [DOI: 10.1103/PhysRevB.97.035406](https://journals.aps.org/prb/abstract/10.1103/PhysRevB.97.035406){:target='_blank'}. @@ -166,7 +166,7 @@ The following JupyterLite notebook demonstrates the process of creating material {% with origin_url=config.extra.jupyterlite.origin_url %} {% with notebooks_path_root=config.extra.jupyterlite.notebooks_path_root %} -{% with notebook_name='specific_examples/defect_creation_island.ipynb' %} +{% with notebook_name='specific_examples/defect_surface_island_titanium_nitride.ipynb' %} {% include 'jupyterlite_embed.html' %} {% endwith %} {% endwith %} @@ -174,7 +174,7 @@ The following JupyterLite notebook demonstrates the process of creating material