diff --git a/setup.py b/setup.py
index 35a25f0e8..9aa6872c4 100644
--- a/setup.py
+++ b/setup.py
@@ -56,7 +56,6 @@ def main():
                 "qfit_density = qfit.qfit_density:main",
                 "qfit_mtz_to_ccp4 = qfit.mtz_to_ccp4:main",
                 "edia = qfit.edia:main",
-                "relabel = qfit.relabel:main",
                 "remove_altconfs = qfit.remove_altconfs:main",
                 "side_chain_remover = qfit.side_chain_remover:main",
                 "redistribute_cull_low_occupancies = qfit.redistribute_cull_low_occupancies:main",
diff --git a/src/qfit/relabel.py b/src/qfit/relabel.py
index 750c44f92..98a3e5a11 100644
--- a/src/qfit/relabel.py
+++ b/src/qfit/relabel.py
@@ -255,48 +255,3 @@ def run(self):
         self.structure.reorder()
         # self.structure.tofile("Test_relabel.pdb")
         return self.structure
-
-
-def parse_args():
-    p = argparse.ArgumentParser(description=__doc__)
-    p.add_argument("structure", type=str, help="PDB-file containing structure.")
-
-    # MCMC options
-    p.add_argument(
-        "-S",
-        "--number-of-sims",
-        type=int,
-        dest="nSims",
-        default=10000,
-        metavar="<int>",
-        help="Number of simulations for MCMC.",
-    )
-    p.add_argument(
-        "-NC",
-        "--number-of-chains",
-        type=int,
-        dest="nChains",
-        default=10,
-        metavar="<int>",
-        help="Number of chains for MCMC.",
-    )
-
-    args = p.parse_args()
-    return args
-
-
-def main():
-    args = parse_args()
-
-    # Extract residue and prepare it
-    structure = Structure.fromfile(args.structure).reorder()
-
-    options = RelabellerOptions()
-    options.apply_command_args(args)
-
-    relabeller = Relabeller(structure, options)
-    relabeller.run()
-
-
-if __name__ == "__main__":
-    main()