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| r805: | |
| * fixed fastq-mcf 'start' bug for ubuntu 14.04 | |
| r780: | |
| * fixed fastq-mcf output | |
| * added support for fastq-multx reading from headers | |
| * bundled entire sparsehash library, changed Makefile to include it | |
| * fastq-join corrected quality in overlapped regions | |
| * added a proper test suite. requires perl & Test::More | |
| * fastq-multx minimum distance | |
| * fastq-join allow insert < read-length | |
| * fastq-mcf corrected low-complexity filtering | |
| r181 - CASAVA purity filtering | |
| r154 - fixed major bug in RMN's that would invalidate reads | |
| r152 - allowed short adapters to work at the 'begin' of reads | |
| r171 - paired-ends get trimmed like anything else....other behavior was too conservative | |
| r258 - gzip support on input and output, append barcode to unmatched id | |
| r353 - support for dual-indexed nextera reads in fastq-multx, new defaults based on ROC curve analysis | |
| r401 - added -L, included google dir, included build for sam-stats | |
| r408 - updated fast-join docs, changed default mismatch to 8% | |
| r425 - fastq-mcf filtering options, multx verif char fixed | |
| r474 - RNAmode & coverage stats output | |
| r475 - fix paired-end forward/reverse counts | |
| r534 - -S can be before -R, also ver num increment | |
| r551 - eventer -l 0 bug fix, debug output improvement | |
| r558 - sam-stats snp rate change, fastq-lib poorqual N's issue fixed, buffering added (todo: add to lib) |