max-n-pct default needs to be -1

ExpressionAnalysis · 9135b8d371fd98be85b7cfa36c4a942832043696 · earonesty committed Sep 4, 2014 · Sep 4, 2014 · 9135b8d
1 parent 7c44c8e
commit 9135b8d371fd98be85b7cfa36c4a942832043696
Unified Split

Showing with 1 addition and 1 deletion.

+1 −1 clipper/fastq-mcf.cpp
diff --git a/clipper/fastq-mcf.cpp b/clipper/fastq-mcf.cpp
@@ -82,7 +82,7 @@ const char *cmd_align_pe = "bowtie -S %i -1 %1 -2 %2";
 
 // quality filter args
 int qf_mean=0, qf_max_ns=-1, qf_xgt_num=0, qf_xgt_min=0, qf_max_n_pct=-1;
-int qf2_mean=0, qf2_max_ns=-1, qf2_xgt_num=0, qf2_xgt_min=0, qf2_max_n_pct=0;
+int qf2_mean=0, qf2_max_ns=-1, qf2_xgt_num=0, qf2_xgt_min=0, qf2_max_n_pct=-1;
 
 // qual adjust
 class adjustment {