diff --git a/clipper/Makefile b/clipper/Makefile index 2c083f2..dad4a7f 100644 --- a/clipper/Makefile +++ b/clipper/Makefile @@ -42,7 +42,7 @@ getrel: $(PKG).spec: perl -pe 's/%RELEASE%/${REL}/' $(PKG).spex > $(PKG).spec -$(PKG).tar.gz: Makefile $(TOOLS) $(SRC) $(PKG).spec fastq-lib.cpp fastq-lib.h sam-stats.cpp fastq-stats.cpp gcModel.cpp gcModel.h varcall.cpp utils.h README CHANGES sparsehash-2.0.2 samtools/*.c t +$(PKG).tar.gz: Makefile $(TOOLS) $(SRC) $(PKG).spec fastq-lib.cpp fastq-lib.h sam-stats.cpp fastq-stats.cpp gcModel.cpp gcModel.h varcall.cpp utils.h README CHANGES sparsehash-2.0.3 samtools/*.c t rm -rf $(PKG).${VER}-${REL} mkdir $(PKG).${VER}-${REL} mkdir $(PKG).${VER}-${REL}/tidx @@ -68,10 +68,10 @@ $(PKG).${VER}-${REL}.tar.gz: $(PKG).tar.gz %: %.cpp fastq-lib.cpp fastq-lib.h sparsehash $(CC) $(CFLAGS) $< fastq-lib.cpp -o $@ -sparsehash: sparsehash-2.0.2 - cd sparsehash-2.0.2; ./configure; make +sparsehash: sparsehash-2.0.3 + cd sparsehash-2.0.3; ./configure; make mkdir sparsehash - cp -r sparsehash-2.0.2/src/sparsehash/* sparsehash/ + cp -r sparsehash-2.0.3/src/sparsehash/* sparsehash/ # why the libbam.a doesn't work? not sure... *.o works sam-stats: sam-stats.cpp samtools/libbam.a samtools/bam.h fastq-lib.h sparsehash