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Commits on Feb 26, 2016

  1. Merge pull request #44 from mattnashbrowns/desubvert 

    Removed LastChangedRevision SVN magic
    committed Feb 26, 2016
    27a4809
  2. @mattnashbrowns

    Removed LastChangedRevision SVN magic as it will not only not work, b… 

    …ut will prevent compilation. Updated the version numbers to the last-changed SVN revision number from the old Google Code repo.
    mattnashbrowns committed Feb 26, 2016
    e460ca8
Commits on Oct 8, 2015

  1. Update README.md

    EA Genomic Services committed Oct 8, 2015
    92827c4

  2. Create README.md

    EA Genomic Services committed Oct 8, 2015
    b4417ff
Commits on Sep 25, 2014

  1. make varcall more tweakable

    earonesty committed Sep 25, 2014
    5d0cad0

  2. No commit message

    earonesty committed Sep 25, 2014
    fb9245c
Commits on Sep 24, 2014

  1. fix depth filter

    earonesty committed Sep 24, 2014
    722be94
Commits on Sep 18, 2014

  1. add fcid option

    earonesty committed Sep 18, 2014
    9fb7f46
Commits on Sep 17, 2014

  1. fix 1 more time for RNA seq varall diversity

    earonesty committed Sep 17, 2014
    e4131ee
Commits on Sep 16, 2014

  1. important: cap lookbehind since we're using a vector... 

    maybe use a list instead? typically it's rather sparse
    earonesty committed Sep 16, 2014
    417a8f1

  2. debug-varcall

    earonesty committed Sep 16, 2014
    76701b3

  3. accounting?

    earonesty committed Sep 16, 2014
    ee42f44
Commits on Sep 8, 2014

  1. 0.96 ... pretty big change to dup filter!

    earonesty committed Sep 8, 2014
    302fcb9
Commits on Sep 5, 2014

  1. MapQ 0 on unanchored reads

    earonesty committed Sep 5, 2014
    fdbe3b4

  2. fix dup filter... speed it up too

    earonesty committed Sep 5, 2014
    d4567a1

  3. fix duplicate filtering...

    earonesty committed Sep 5, 2014
    957b9ae
Commits on Sep 4, 2014

  1. max-n-pct default needs to be -1

    earonesty committed Sep 4, 2014
    9135b8d

  2. document changes

    earonesty committed Sep 4, 2014
    7c44c8e

  3. work with all svn responses

    earonesty committed Sep 4, 2014
    fe2845b

  4. new output is correct

    earonesty committed Sep 4, 2014
    12e86c6

  5. fix mcf

    earonesty committed Sep 4, 2014
    c66bf6e

  6. fix for proper use of strncmp

    earonesty committed Sep 4, 2014
    90f6492

  7. add test for START

    earonesty committed Sep 4, 2014
    81ed06c
Commits on Sep 3, 2014

  1. test for start

    earonesty committed Sep 3, 2014
    d4f913f

  2. more junk rm

    earonesty committed Sep 3, 2014
    5c338fe

  3. remove junk

    earonesty committed Sep 3, 2014
    cffdaa2
Commits on Sep 2, 2014

  1. fix dox

    earonesty committed Sep 2, 2014
    96e0356

  2. comment

    earonesty committed Sep 2, 2014
    f24b263

  3. update ver for vse rules

    earonesty committed Sep 2, 2014
    6550272

  4. vse rates work

    earonesty committed Sep 2, 2014
    8c07b02

  5. variation specific error rates are now used, if available

    earonesty committed Sep 2, 2014
    3b62d5b

  6. variation specific error rates output 

    TODO: use them
    earonesty committed Sep 2, 2014
    004cd7f
Commits on Aug 29, 2014

  1. ignore all indels feature

    earonesty committed Aug 29, 2014
    b5a3d31

  2. increase default balance

    earonesty committed Aug 29, 2014
    3dfbbca

  3. fix noise

    earonesty committed Aug 29, 2014
    9c9db32