/ea-utils

History for ea-utils/clipper
Commits on Jun 20, 2017
  1. @wandai330

    Rollback makefile 

    no c++0x flag
    wandai330 committed on GitHub Jun 20, 2017
    12ce104
  2. @wandai330

    Some int type variable overflow 

    The maximal number of int type is 2,147,483,648. But now some number could be 5 billion or bigger.
Changed those variables to type uint64_t
    wandai330 committed on GitHub Jun 20, 2017
    dabfc9c
Commits on Jun 15, 2017
  1. @wandai330

    Fix int type overflow 

    Minimal changes made to fix a couple of total numbers as uint64_t to hold numbers larger than 2 billion
    wandai330 committed on GitHub Jun 15, 2017
    28e3c8f
Commits on May 9, 2017

  1. Merge pull request #56 from wltrimbl/master 

    Two patches for OSX portability
    committed on GitHub May 9, 2017
    e556e16

  2. Merge pull request #55 from wltrimbl/updatesparsehash 

    Updates sparsehash to 2.0.3 dating from 2015-10-12
    committed on GitHub May 9, 2017
    ae1bb52
Commits on Apr 6, 2017
  1. @wltrimbl

    deleted object files

    wltrimbl committed Apr 6, 2017
    848a290
Commits on Apr 5, 2017
  1. @wltrimbl

    Update makefile to sparsehash-2.0.3

    wltrimbl committed Apr 5, 2017
    9f48a33
  2. @wltrimbl

    Added sparsehash 2.0.3 (6af4bcf4ded7cf270ebb190470b8854c6531fa14)

    wltrimbl committed Apr 5, 2017
    ed62059
  3. @wltrimbl

    Removed --rsyncable from gzip invokation for portablity

    wltrimbl committed Apr 5, 2017
    b6455be
  4. @wltrimbl

    Fixed bug in input parser--failed to allocate space for the null term… 

    …inator
    wltrimbl committed Apr 5, 2017
    261c794
  5. @wltrimbl

    Removed sparsehash-2.0.2

    wltrimbl committed Apr 5, 2017
    7690f22
Commits on Feb 2, 2017

  1. add -s option for barcode label in file name

    committed Feb 2, 2017
    672c7e6
Commits on Jan 30, 2017

  1. 0 length read problem, fastq-mcf would stop reading the fastq file on… 

    …ce encountering a 0 length read
    committed Jan 30, 2017
    fca0333
Commits on Jan 26, 2017

  1. new options for min max and handle 0 length reads

    committed Jan 26, 2017
    9e7f628
Commits on Feb 26, 2016
  1. @mattnashbrowns

    Removed LastChangedRevision SVN magic as it will not only not work, b… 

    …ut will prevent compilation. Updated the version numbers to the last-changed SVN revision number from the old Google Code repo.
    mattnashbrowns committed Feb 26, 2016
    e460ca8
Commits on Sep 25, 2014

  1. make varcall more tweakable

    earonesty committed Sep 25, 2014
    5d0cad0

  2. No commit message

    earonesty committed Sep 25, 2014
    fb9245c
Commits on Sep 24, 2014

  1. fix depth filter

    earonesty committed Sep 24, 2014
    722be94
Commits on Sep 18, 2014

  1. add fcid option

    earonesty committed Sep 18, 2014
    9fb7f46
Commits on Sep 17, 2014

  1. fix 1 more time for RNA seq varall diversity

    earonesty committed Sep 17, 2014
    e4131ee
Commits on Sep 16, 2014

  1. important: cap lookbehind since we're using a vector... 

    maybe use a list instead? typically it's rather sparse
    earonesty committed Sep 16, 2014
    417a8f1

  2. debug-varcall

    earonesty committed Sep 16, 2014
    76701b3

  3. accounting?

    earonesty committed Sep 16, 2014
    ee42f44
Commits on Sep 8, 2014

  1. 0.96 ... pretty big change to dup filter!

    earonesty committed Sep 8, 2014
    302fcb9
Commits on Sep 5, 2014

  1. MapQ 0 on unanchored reads

    earonesty committed Sep 5, 2014
    fdbe3b4

  2. fix dup filter... speed it up too

    earonesty committed Sep 5, 2014
    d4567a1

  3. fix duplicate filtering...

    earonesty committed Sep 5, 2014
    957b9ae
Commits on Sep 4, 2014

  1. max-n-pct default needs to be -1

    earonesty committed Sep 4, 2014
    9135b8d

  2. document changes

    earonesty committed Sep 4, 2014
    7c44c8e

  3. work with all svn responses

    earonesty committed Sep 4, 2014
    fe2845b

  4. new output is correct

    earonesty committed Sep 4, 2014
    12e86c6

  5. fix mcf

    earonesty committed Sep 4, 2014
    c66bf6e

  6. fix for proper use of strncmp

    earonesty committed Sep 4, 2014
    90f6492

  7. add test for START

    earonesty committed Sep 4, 2014
    81ed06c
Commits on Sep 3, 2014

  1. test for start

    earonesty committed Sep 3, 2014
    d4f913f