/ea-utils

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Commits on Sep 4, 2014

  1. document changes

    earonesty committed Sep 4, 2014
    7c44c8e

  2. work with all svn responses

    earonesty committed Sep 4, 2014
    fe2845b

  3. new output is correct

    earonesty committed Sep 4, 2014
    12e86c6

  4. fix mcf

    earonesty committed Sep 4, 2014
    c66bf6e

  5. fix for proper use of strncmp

    earonesty committed Sep 4, 2014
    90f6492

  6. add test for START

    earonesty committed Sep 4, 2014
    81ed06c
Commits on Sep 3, 2014

  1. test for start

    earonesty committed Sep 3, 2014
    d4f913f

  2. more junk rm

    earonesty committed Sep 3, 2014
    5c338fe

  3. remove junk

    earonesty committed Sep 3, 2014
    cffdaa2
Commits on Sep 2, 2014

  1. fix dox

    earonesty committed Sep 2, 2014
    96e0356

  2. comment

    earonesty committed Sep 2, 2014
    f24b263

  3. update ver for vse rules

    earonesty committed Sep 2, 2014
    6550272

  4. vse rates work

    earonesty committed Sep 2, 2014
    8c07b02

  5. variation specific error rates are now used, if available

    earonesty committed Sep 2, 2014
    3b62d5b

  6. variation specific error rates output 

    TODO: use them
    earonesty committed Sep 2, 2014
    004cd7f
Commits on Aug 29, 2014

  1. ignore all indels feature

    earonesty committed Aug 29, 2014
    b5a3d31

  2. increase default balance

    earonesty committed Aug 29, 2014
    3dfbbca

  3. fix noise

    earonesty committed Aug 29, 2014
    9c9db32

  4. version increment

    earonesty committed Aug 29, 2014
    f4c1b42

  5. restructuring for eventual VarProwl integration, and extended format … 

    …control
    earonesty committed Aug 29, 2014
    99a6bdc

  6. multx tests!

    earonesty committed Aug 29, 2014
    24231d7
Commits on Aug 26, 2014

  1. add

    earonesty committed Aug 26, 2014
    4deef16
Commits on Aug 25, 2014

  1. No commit message

    earonesty committed Aug 25, 2014
    35c1120

  2. add makefile

    earonesty committed Aug 25, 2014
    2b8c540

  3. all nice

    earonesty committed Aug 25, 2014
    11c835c

  4. add join tests

    earonesty committed Aug 25, 2014
    de70a55

  5. multx tests done!

    earonesty committed Aug 25, 2014
    49bdb1b

  6. add prove

    earonesty committed Aug 25, 2014
    237c4f1

  7. add test dir

    earonesty committed Aug 25, 2014
    43cf019

  8. fix trim stats

    earonesty committed Aug 25, 2014
    0ca6693
Commits on Aug 22, 2014

  1. alloc seq correct time

    earonesty committed Aug 22, 2014
    e8a7897
Commits on Aug 20, 2014

  1. handle the rare case of when the mean=sum

    earonesty committed Aug 20, 2014
    a433d6c

  2. verison with amplicon count

    earonesty committed Aug 20, 2014
    d206730
Commits on Aug 19, 2014

  1. varcall agreement fixed again

    earonesty committed Aug 19, 2014
    bab1b04

  2. fix divers

    earonesty committed Aug 19, 2014
    ff9b5b0