From 66828922777cd4c06b1b32e0f25d184f02623531 Mon Sep 17 00:00:00 2001
From: Stuart Owen <stuart.owen@manchester.ac.uk>
Date: Mon, 10 Mar 2014 15:13:47 +0000
Subject: [PATCH] Got building with maven and Java 7

---
 pom.xml                                       |   4 +-
 .../bioportal/OntologyListHandlerTest.java    | 103 ------------------
 2 files changed, 2 insertions(+), 105 deletions(-)
 delete mode 100644 src/test/java/uk/ac/manchester/cs/owl/semspreadsheets/repository/bioportal/OntologyListHandlerTest.java

diff --git a/pom.xml b/pom.xml
index a6b873e..ccafd22 100644
--- a/pom.xml
+++ b/pom.xml
@@ -25,8 +25,8 @@
 			<plugin>
 				<artifactId>maven-compiler-plugin</artifactId>
 				<configuration>
-					<source>1.6</source>
-					<target>1.6</target>
+					<source>1.7</source>
+					<target>1.7</target>
 				</configuration>
 			</plugin>
 			<plugin>
diff --git a/src/test/java/uk/ac/manchester/cs/owl/semspreadsheets/repository/bioportal/OntologyListHandlerTest.java b/src/test/java/uk/ac/manchester/cs/owl/semspreadsheets/repository/bioportal/OntologyListHandlerTest.java
deleted file mode 100644
index 0cefa8d..0000000
--- a/src/test/java/uk/ac/manchester/cs/owl/semspreadsheets/repository/bioportal/OntologyListHandlerTest.java
+++ /dev/null
@@ -1,103 +0,0 @@
-/*******************************************************************************
- * Copyright (c) 2009-2012, University of Manchester
- * 
- * Licensed under the New BSD License. 
- * Please see LICENSE file that is distributed with the source code
- ******************************************************************************/
-package uk.ac.manchester.cs.owl.semspreadsheets.repository.bioportal;
-
-import static org.junit.Assert.assertEquals;
-
-import java.io.BufferedInputStream;
-import java.io.InputStream;
-import java.util.ArrayList;
-import java.util.Collection;
-
-import javax.xml.parsers.SAXParser;
-import javax.xml.parsers.SAXParserFactory;
-
-import org.junit.Test;
-
-import uk.ac.manchester.cs.owl.semspreadsheets.repository.RepositoryItem;
-
-public class OntologyListHandlerTest {
-	
-//	@Test
-//	public void testListHandling() throws Exception {
-//        final Collection<RepositoryItem> collection = new ArrayList<RepositoryItem>();
-//		BioPortalOntologyListHandler handler = new BioPortalOntologyListHandler(new BioPortalRepositoryItemHandler() {
-//            public void handleItem(RepositoryItem handler) {        
-//            	collection.add(handler);
-//            }
-//        });
-//		
-//		SAXParserFactory saxParserFactory = SAXParserFactory.newInstance();		
-//        SAXParser saxParser = saxParserFactory.newSAXParser();        
-//        BufferedInputStream bufferedInputStream = new BufferedInputStream(getDummyXMLStream("bioportal_responses/dummy_ontology_list.xml"));
-//        saxParser.parse(bufferedInputStream, handler);
-//        bufferedInputStream.close();
-//        
-//        int [] ontologyIds = {10,20,30};
-//        String [] labels = {"A-label","B-label","C-label"};
-//        String [] formats = {"OWL-DL","OBO","OWL"};
-//        BioPortalRepositoryItem [] items = collection.toArray(new BioPortalRepositoryItem[0]);
-//        assertEquals(3,items.length);
-//        for (int i=0;i<items.length;i++) {
-//        	BioPortalRepositoryItem item = items[i];
-//        	String asString = labels[i]+" : "+ontologyIds[i]+" ("+formats[i]+")";
-//        	assertEquals(asString,item.toString());
-//        }
-//	}
-//	
-//	@Test
-//	public void testFormatFiltering() throws Exception {
-//		final Collection<RepositoryItem> collection = new ArrayList<RepositoryItem>();
-//		BioPortalOntologyListHandler handler = new BioPortalOntologyListHandler(new BioPortalRepositoryItemHandler() {
-//            public void handleItem(RepositoryItem handler) {        
-//            	collection.add(handler);
-//            }
-//        });
-//		
-//		SAXParserFactory saxParserFactory = SAXParserFactory.newInstance();
-//        SAXParser saxParser = saxParserFactory.newSAXParser();
-//        BufferedInputStream bufferedInputStream = new BufferedInputStream(getDummyXMLStream("bioportal_responses/dummy_ontology_list_bad_formats.xml"));
-//        saxParser.parse(bufferedInputStream, handler);
-//        bufferedInputStream.close();
-//        
-//        assertEquals(1,collection.size());
-//        RepositoryItem item = collection.iterator().next();
-//        assertEquals("OWL-DL",item.getFormat());
-//	}
-//	
-//	@Test
-//	public void testSkipsNonNumericIDsFiltering() throws Exception {
-//		final Collection<RepositoryItem> collection = new ArrayList<RepositoryItem>();
-//		BioPortalOntologyListHandler handler = new BioPortalOntologyListHandler(new BioPortalRepositoryItemHandler() {
-//            public void handleItem(RepositoryItem handler) {        
-//            	collection.add(handler);
-//            }
-//        });
-//		
-//		SAXParserFactory saxParserFactory = SAXParserFactory.newInstance();
-//        SAXParser saxParser = saxParserFactory.newSAXParser();
-//        BufferedInputStream bufferedInputStream = new BufferedInputStream(getDummyXMLStream("bioportal_responses/ontology_list_with_non_numeric_ids.xml"));
-//        saxParser.parse(bufferedInputStream, handler);
-//        bufferedInputStream.close();
-//        
-//        int [] ontologyIds = {10,20};
-//        String [] labels = {"A-label","B-label"};
-//        String [] formats = {"OWL-DL","OBO"};
-//        BioPortalRepositoryItem [] items = collection.toArray(new BioPortalRepositoryItem[0]);
-//        assertEquals(2,items.length);
-//        for (int i=0;i<items.length;i++) {
-//        	BioPortalRepositoryItem item = items[i];
-//        	String asString = labels[i]+" : "+ontologyIds[i]+" ("+formats[i]+")";
-//        	assertEquals(asString,item.toString());
-//        }
-//	}		
-//	
-//	private InputStream getDummyXMLStream(String filename) throws Exception {
-//		return OntologyListHandlerTest.class.getResourceAsStream("/"+filename);
-//	}
-
-}