Soil Organic Carbon mapping Cookbook
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SOC-Mapping-Cookbook
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01-Presentation.Rmd
02-Soil-property-maps.Rmd
03-setting-up-software-environment.Rmd
04-preparation-soil-data.Rmd
05-spatial-covariates.Rmd
061-mapping.Rmd
062-mapping-RK.Rmd
063-mapping-rf.Rmd
064-mapping-svm.Rmd
07-Validation.Rmd
08-model-evaluation.Rmd
09-uncertainty.Rmd
10-data-sharing.Rmd
11-checklist.Rmd
13-code-examples.Rmd
DESCRIPTION
MK_soilmap_simple.dbf
MK_soilmap_simple.prj
MK_soilmap_simple.shp
MK_soilmap_simple.shx
README.md
RK.PNG
References.bib
SOC-Mapping-Cookbook.Rproj
SOCMapping.ilg
SOCMapping.lof
SOCMapping.lot
SOCMapping.nlo
SOCMapping.nls
_bookdown.yml
_build.sh
_deploy.sh
_output.yml
abbrev.tex
backcover.pdf
backcover.tex
book.bib
bookdown-demo.log
covariates.RData
cover.pdf
cover2.pdf
frontcover.tex
index.Rmd
packages.bib
preamble.tex
style.css
toc.css

README.md

SOC-Mapping-Cookbook

The Soil Organic Carbon mapping Cookbook

This is the website for the second edition of the cookbook. The cookbook provides generic methodologies and technical steps to produce SOC maps. This edition has been updated with knowledge and practical experiences gained during the implementaion process of GSOCmap V1.0 throughout 2017. The cookbook includes step-by-step guidance for developing 1 km grids for SOC stocks, as well as for the preparation of local soil data, the compilation and preprocessing of ancillary spatial data sets, upscaling methodologies, and uncertainty assessment methods. Guidance is mainly specific to SOC data, but as this cookbook contains generic sections on soil grid development it can be applicsable to map various soil properties.

The guidance is focusing on the upscaling of national SOC stocks in order to produce the GSOCMap. Therefore, the cookbook supplements the *GSP Guidelines for Sharing National Data/Information to Compile a Global Soil Organic Carbon (GSOC) Map, providing technical guidelines to prepare and evaluate spatial soil data sets to:

  • Determine SOC stocks from local samples to a target depth of 30 cm;
  • Prepare spatial covariates for upscaling; and
  • Select and apply the best suitable upscaling methodology.

This books introduce 5 different approaches for obtaining the SOC maps. The first two methods presented are classified as convetional upscaling. The first one is class-matching. In this approach we derive average SOC stocks per class: soil type for which a national map exists, or combination with other spatial covariates (e.g. land use category, climate type, biome, etc.). This approach is used in the absence of spatial coordinates of the source data. The s econd one is geo-matching, were upscaling is based on averaged SOC values per mapping unit. Then, we present 3 methods from digital soil mapping. Regression-Kriging is a hybrid model with both, a deterministic and a stochastic component [@hengl2007regression]. Next method is called random forest. This one is an ensemble of regression trees based on bagging. This machine learning algorithm uses a different combination of prediction factors to train multiple regression trees [@Breiman1996]. The last method is called support Vector Machines (SVM). This method applies a simple linear method to the data but in a high-dimensional feature space non-linearly related to the input space [@Karatzoglou2006]. We present this diversity of methods because there is no best mapping method for digital soil mapping, and testing and selection has to be done for every data scenario [@soil-2017-40].