FNNDSC / BCH

Repositories

• cube-design

  All CUBE related designs
  MIT 0 4 14 (2 issues need help) 0 Updated Sep 16, 2020

• pl-mgz2imageslices

  A ChRIS plugin to convert `mgz` to `png` or `jpeg` which will also be useful in other project workflows
  Python MIT 0 0 1 0 Updated Sep 16, 2020

• pl-generate_hdf5

  An app to convert original and segmented brain images in mgz format to .hdf5 format in axial, sagittal, and coronal plane required for FCNN training
  Python MIT 0 0 0 0 Updated Sep 16, 2020

• ChRIS_ultron_backEnd

  Backend for ChRIS

  docker kubernetes django openshift django-rest-framework pipelines python3
  Python MIT 23 20 43 (1 issue needs help) 0 Updated Sep 16, 2020

• mgz2imgslices

  A simple Python utility which converts mgz files to readable formats like PNG/JPEG, separately for each label defined within it.
  Python MIT 0 0 2 0 Updated Sep 15, 2020

• pypx

  Python wrapper to interact with a PACS (based off DCMTK and PyDicom)
  Python 18 53 9 0 Updated Sep 15, 2020

• scripts

  Various Scripts
  Shell 3 3 1 0 Updated Sep 15, 2020

• pfcon

  Data / Compute manager
  Python MIT 14 5 13 3 Updated Sep 15, 2020

• pl-mgz2LUT_report

  A plug-in to generate a volume report on a segmented 'mgz' brain image from a Look-Up Table
  Python MIT 0 0 0 0 Updated Sep 15, 2020

• cookiecutter-chrisapp

  A cookiecutter template for Chris app plugins

  docker cookiecutter python3
  Python MIT 5 4 2 0 Updated Sep 15, 2020

• pl-dsdircopy

  A simple ChRIS 'ds' app that copies the contents of the `input` directory to an `output` directory.
  Python MIT 0 0 0 0 Updated Sep 14, 2020

• pl-dircopy

  A Chris 'fs' plugin app to copy file/folders from a directory into a Chris' feed.
  Python MIT 1 0 0 0 Updated Sep 14, 2020

• pfurl

  Path-File-URL client.
  Python MIT 10 1 4 1 Updated Sep 13, 2020

• tslide-presentations

  A repo to house/keep tslide presentations.
  0 0 3 0 Updated Sep 10, 2020

• pl-fastsurfer_inference

  An app to efficiently perform cortical parcellation and segmentation on raw brain MRI images
  Python MIT 0 0 0 0 Updated Sep 10, 2020

• website

  ChRIS Project Website
  HTML MIT 0 1 8 0 Updated Sep 9, 2020

• pman

  A process management system written in python
  Python MIT 22 9 15 4 Updated Sep 9, 2020

• pfioh

  Path File IO Handler
  Python MIT 18 1 4 2 Updated Sep 9, 2020

• ami

  AMI Medical Imaging (AMI) JS ToolKit

  javascript webgl threejs fs stl dicom medical
  JavaScript MIT 183 525 100 21 Updated Sep 9, 2020

• ChRIS_store_ui

  UI for the ChRIS Store

  javascript typescript spa html5 css3 reactjs medical
  JavaScript MIT 12 11 16 (1 issue needs help) 8 Updated Sep 7, 2020

• pfdicom_tagSub

  A DICOM tag substitution utility. Essentially allows for DICOM anonymization.
  Python Apache-2.0 0 0 0 0 Updated Sep 4, 2020

• ChRIS-E2E
  Python 10 0 1 3 Updated Sep 4, 2020

• pl-mgz2imgtree
  Python MIT 0 0 0 0 Updated Sep 3, 2020

• pl-pfdorun_imgmagick

  A ChRIS plug-in which provides special utility to run "imagemagick" Linux CLI programs using the pfdo_run utility.
  Python MIT 0 0 0 0 Updated Sep 3, 2020

• pfdo_run
  Python Apache-2.0 0 0 1 0 Updated Sep 2, 2020

• pl-imageconvert
  Python MIT 0 0 0 0 Updated Sep 1, 2020

• pfdo

  An application that provides the base functionality to use/demo the `pftree` callback usage.
  Python Apache-2.0 0 0 2 0 Updated Sep 1, 2020

• pyimgconvert

  Python wrapper around Linux CLI "convert" which works as an entrypoint around the Linux image processing 'ImageMagick'
  Python MIT 0 0 0 0 Updated Sep 1, 2020

• cni-store-proxy

  A proxy to the ChRIS Store API written in express.js for running the CNI MICCAI Challenge.
  JavaScript MIT 1 0 0 0 Updated Aug 31, 2020

• mgz2imagetree

  A python utility that walks through the inputdir and fetches mgz files of multiple subjects, uses mgz2imgslices to filter the labels and create labelled directories containing png/jpeg slices for each subject in the outputdir.
  Python MIT 0 0 0 0 Updated Aug 31, 2020