@@ -123,8 +123,8 @@
echo $pacs->moveSeries();*/
}
/*
// define command line arguments
// define command line arguments
$ shortopts"" ;
$ shortopts"p:" ; // Incoming file location
$ shortopts"f:" ; // Incoming file name
@@ -139,154 +139,6 @@
$ resultPACS ::process ($ tmpfile
// initiate variables
$patient_chris_id = -1;
$data_chris_id = -1;
$data_nb_files = -1;
$image_chris_id = -1;
$series_description = 'NoSeriesDescription';
// start patient table lock
$db = DB::getInstance();
$db->lock('patient', 'WRITE');
if (array_key_exists('PatientName',$result) && array_key_exists('PatientID',$result))
{
$patientMapper = new Mapper('Patient');
$patientMapper->filter('name = (?)',$result['PatientName'][0]);
$patientMapper->filter('uid = (?)',$result['PatientID'][0]);
$patientResult = $patientMapper->get();
if(count($patientResult['Patient']) == 0)
{
// create patient model
$patientObject = new Patient();
$patientObject->name = $result['PatientName'][0];
if(array_key_exists('PatientBirthDate',$result))
{
$date = $result['PatientBirthDate'][0];
$datetime = substr($date, 0, 4).'-'.substr($date, 4, 2).'-'.substr($date, 6, 2);
$patientObject->dob = $datetime;
}
else{
$patientObject->dob = '0000-00-00';
}
$patientObject->sex = $result['PatientSex'][0];
$patientObject->uid = $result['PatientID'][0];
// add the patient model and get its id
$patient_chris_id = Mapper::add($patientObject);
}
else {
// get patient id
$patient_chris_id = $patientResult['Patient'][0]->id;
}
}
else {
echo 'PatientName or PatientMRN not there';
// finish patient table lock
$db->unlock();
return;
}
// finish patient table lock
$db->unlock();
// start data table lock
$db->lock('data', 'WRITE');
// Does data exist: SeriesInstanceUID
if (array_key_exists('SeriesInstanceUID',$result))
{
// does data (series) exist??
$dataMapper = new Mapper('Data');
$value = $result['SeriesInstanceUID'][0];
$dataMapper->filter('uid = (?)',$value );
$dataResult = $dataMapper->get();
// if doesnt exist, add data
if(count($dataResult['Data']) == 0)
{
// create object
// create data model
$dataObject = new Data();
$dataObject->uid = $result['SeriesInstanceUID'][0];
// remove potential white spaces
if(array_key_exists('SeriesDescription',$result))
{
$series_description = sanitize($result['SeriesDescription'][0]);
}
$dataObject->name = $series_description;
$date = $result['ContentDate'][0];
$datemysql = substr($date, 0, 4).'-'.substr($date, 4, 2).'-'.substr($date, 6, 2);
$time = $result['ContentTime'][0];
$timemysql = substr($time, 0, 2).':'.substr($time, 2, 2).':'.substr($time, 4, 2);
$datetimemysql = $datemysql.' '. $timemysql;
$dataObject->time = $datetimemysql;
$dataObject->meta_information = '';
// get nb of files in data
$pacs = new PACS(PACS_SERVER, PACS_PORT, CHRIS_AETITLE);
$pacs->addParameter('RetrieveAETitle', '');
$pacs->addParameter('StudyInstanceUID', $result['StudyInstanceUID'][0]);
$pacs->addParameter('SeriesInstanceUID', $result['SeriesInstanceUID'][0]);
$pacs->addParameter('NumberOfSeriesRelatedInstances', '');
$all_results = $pacs->querySeries();
$dataObject->nb_files = $all_results['NumberOfSeriesRelatedInstances'][0];
// add the data model and get its id
$data_chris_id = Mapper::add($dataObject);
$data_nb_files = $dataObject->nb_files;
}
// else update data
else{
// date not accessible from pacs so can't be created with feed
$date = $result['ContentDate'][0];
$datemysql = substr($date, 0, 4).'-'.substr($date, 4, 2).'-'.substr($date, 6, 2);
$time = $result['ContentTime'][0];
$timemysql = substr($time, 0, 2).':'.substr($time, 2, 2).':'.substr($time, 4, 2);
$datetimemysql = $datemysql.' '. $timemysql;
$dataResult['Data'][0]->time = $datetimemysql;
Mapper::update($dataResult['Data'][0], $dataResult['Data'][0]->id);
// update it
$series_description = $dataResult['Data'][0]->name;
$data_chris_id = $dataResult['Data'][0]->id;
$data_nb_files = $dataResult['Data'][0]->nb_files;
}
}
else {
echo 'SOPInstanceUID or SeriesInstanceUID not there';
// finish data table lock
$db->unlock();
return;
}
// finish data table lock
$db->unlock();
// FILESYSTEM Processing
$patientdirname = CHRIS_DATA.$result['PatientID'][0].'-'.$patient_chris_id;
// create folder if doesnt exists
if(!is_dir($patientdirname)){
mkdir($patientdirname);
}
$datadirname = $patientdirname.'/'.$series_description.'-'.$data_chris_id;
// create folder if doesnt exists
if(!is_dir($datadirname)){
mkdir($datadirname);
}
// cp file over if doesnt exist
$filenum = $result['InstanceNumber'][0];
$filename = $datadirname .'/'.$filenum.'.dcm';
if(!is_file($filename)){
copy($tmpfile, $filename);
}
// delete tmp file
unlink($tmpfile);
// delete tmp dir if dir is empty when all files have arrived
$files = scandir($p);
if(count($files) <= 2){
rmdir($p);
}
*/
?>